mRNA_Ecto-sp8_S_contig9402.30906.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9402.30906.1
Unique NamemRNA_Ecto-sp8_S_contig9402.30906.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9402.30906.1 vs. uniprot
Match: D8LS79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS79_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 2.670e-20
Identity = 82/106 (77.36%), Postives = 83/106 (78.30%), Query Frame = 1 
Query:    1 DESADNDEPADDDAWADGXXXXXXXXXXXXXXXXX-------SSPXXXXXXXXXAXEENDDLGPDSGDTSGAVGTFAAPSRSSSAASLWGALYCIVLVVTDALAGI 297
            DESADN   AD DAWAD XXXXXXXXXXXXXXXXX       SSP XXXX    A EENDDLGPDSGD SGA  TFAAPSRSSSA SLWGALYCIVLVV+DALA I
Sbjct:  176 DESADNXXXADGDAWADDXXXXXXXXXXXXXXXXXXXXXXXDSSPSXXXXGSQSADEENDDLGPDSGDNSGAAWTFAAPSRSSSAVSLWGALYCIVLVVSDALARI 281
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BLAST of mRNA_Ecto-sp8_S_contig9402.30906.1 vs. uniprot
Match: A0A6H5L2W4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W4_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.090e-17
Identity = 48/64 (75.00%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:  106 SSPXXXXXXXXXAXEENDDLGPDSGDTSGAVGTFAAPSRSSSAASLWGALYCIVLVVTDALAGI 297
            SSP         A EENDDLGPDSGDTSGA+GTFAA SR+SSAA LWGAL CIVLVVTDALA I
Sbjct:  240 SSPSEDDDGSQSADEENDDLGPDSGDTSGAIGTFAALSRASSAAFLWGALCCIVLVVTDALARI 303
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9402.30906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LS79_ECTSI2.670e-2077.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2W4_9PHAE2.090e-1775.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9402contigEcto-sp8_S_contig9402:2775..3102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size330
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionExpressed protein
Ec32 orthologEc-18_000110.1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145297.4269094-CDS-Ecto-sp8_S_contig9402:2774..30741681145297.4269094-CDS-Ecto-sp8_S_contig9402:2774..3074Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9402 2775..3074 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145297.441089-UTR-Ecto-sp8_S_contig9402:3074..31021681145297.441089-UTR-Ecto-sp8_S_contig9402:3074..3102Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9402 3075..3102 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9402.30906.1prot_Ecto-sp8_S_contig9402.30906.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9402 2775..3074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9402.30906.1

>prot_Ecto-sp8_S_contig9402.30906.1 ID=prot_Ecto-sp8_S_contig9402.30906.1|Name=mRNA_Ecto-sp8_S_contig9402.30906.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=100bp
DESADNDEPADDDAWADGDDTWADDDDTWADDDDDSSPSEDDDGSQSADE
ENDDLGPDSGDTSGAVGTFAAPSRSSSAASLWGALYCIVLVVTDALAGI*
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mRNA from alignment at Ecto-sp8_S_contig9402:2775..3102+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9402.30906.1 ID=mRNA_Ecto-sp8_S_contig9402.30906.1|Name=mRNA_Ecto-sp8_S_contig9402.30906.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=328bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9402:2775..3102+ (Ectocarpus species8 EcLAC_412)
GATGAATCTGCTGATAACGACGAACCTGCTGATGACGACGCGTGGGCTGA
TGGTGACGACACGTGGGCTGATGATGACGACACGTGGGCTGATGATGACG
ACGACTCATCACCGTCTGAAGATGATGACGGATCACAGTCTGCTGATGAG
GAAAATGATGACCTTGGTCCCGACTCAGGCGACACCAGCGGGGCTGTAGG
AACTTTTGCAGCTCCTTCGCGCTCTTCGAGTGCCGCTTCCCTGTGGGGTG
CGCTCTACTGTATCGTCCTGGTAGTCACGGATGCACTAGCAGGAATATAG
CTTCTGTTGCGTAAAGAAGGAAACCGAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9402:2775..3102+

>mRNA_Ecto-sp8_S_contig9402.30906.1 ID=mRNA_Ecto-sp8_S_contig9402.30906.1|Name=mRNA_Ecto-sp8_S_contig9402.30906.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9402:2775..3102+ (Ectocarpus species8 EcLAC_412)
GATGAATCTGCTGATAACGACGAACCTGCTGATGACGACGCGTGGGCTGA
TGGTGACGACACGTGGGCTGATGATGACGACACGTGGGCTGATGATGACG
ACGACTCATCACCGTCTGAAGATGATGACGGATCACAGTCTGCTGATGAG
GAAAATGATGACCTTGGTCCCGACTCAGGCGACACCAGCGGGGCTGTAGG
AACTTTTGCAGCTCCTTCGCGCTCTTCGAGTGCCGCTTCCCTGTGGGGTG
CGCTCTACTGTATCGTCCTGGTAGTCACGGATGCACTAGCAGGAATATAG
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