mRNA_Ecto-sp8_S_contig93984.30899.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig93984.30899.1
Unique NamemRNA_Ecto-sp8_S_contig93984.30899.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig93984.30899.1 vs. uniprot
Match: D8LR70_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR70_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 6.140e-37
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:    1 QGAHALRALSVLCVCIGPEEEEAFRSLRRPLRSLITRSRHEGVRVGAVRTLALACFICSSDDDNTSETL 207
            QGAHALRALSVLCVCIGPEEEEAFRSLRRPLRSLITRSRHEGVRVGAVRTLALACFICSSDDDNTSETL
Sbjct:  128 QGAHALRALSVLCVCIGPEEEEAFRSLRRPLRSLITRSRHEGVRVGAVRTLALACFICSSDDDNTSETL 196
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BLAST of mRNA_Ecto-sp8_S_contig93984.30899.1 vs. uniprot
Match: A0A7S2XZE4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZE4_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 6.160e-14
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:   13 ALRALSVLCVCIGPEEEEAFRSLRRPLRSLITRSRHEGVRVGAVRTLALACFICSSDDDNTSETL 207
            A RAL+VLC+ IGPEEEE ++ +  PLR+++TR  H   R  A+R LA+ACFICSS D +T + L
Sbjct:  136 ACRALAVLCILIGPEEEELYQRIENPLRTIVTRHSHAEGRKAALRCLAIACFICSSQDADTHDLL 200
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BLAST of mRNA_Ecto-sp8_S_contig93984.30899.1 vs. uniprot
Match: A0A835YVX4_9STRA (Interferon-related developmental regulator-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVX4_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.550e-10
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:   46 IGPEEEEAFRSLRRPLRSLITRSRHEGVRVGAVRTLALACFICSSDDDNTSETL 207
            +G EE+E +R L R L + ITR +HEG RV A R LA+ACF+CSSDDD   E L
Sbjct:  170 LGAEEDELYRQLARLLTTSITRGKHEGSRVEACRALAMACFVCSSDDDANDEAL 223
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BLAST of mRNA_Ecto-sp8_S_contig93984.30899.1 vs. uniprot
Match: A0A662XRW8_9STRA (IFRD domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XRW8_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 7.220e-7
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:    4 GAHALRALSVLCVCIGPEEEEAFRSLRRPLRSLITRSRHEGVRVGAVRTLALACFICSSDDD 189
            G  ALR LSVL V +G +E+E F  +  P++ + T      +RV AV TL++ACF+C  DD+
Sbjct:  175 GTLALRVLSVLAVTLGSDEQEFFDDIVAPVQRIFTDRGDTALRVEAVYTLSIACFVCCPDDE 236
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BLAST of mRNA_Ecto-sp8_S_contig93984.30899.1 vs. uniprot
Match: M4BXU3_HYAAE (IFRD domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BXU3_HYAAE)

HSP 1 Score: 52.4 bits (124), Expect = 3.400e-6
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:   19 RALSVLCVCIGPEEEEAFRSLRRPLRSLITRSRHEGVRVGAVRTLALACFICSSDDDNTSETL 207
            R L+VL V  G + E  F+  +  L+ L   +R+  V+V  +R LAL CF+CS+++DNT   L
Sbjct:  157 RILAVLAVIYGDDNERLFQRSKTVLKPLTKSARNAKVKVATIRALALICFVCSAEEDNTERLL 219
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BLAST of mRNA_Ecto-sp8_S_contig93984.30899.1 vs. uniprot
Match: K3WKD3_GLOUD (IFRD domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKD3_GLOUD)

HSP 1 Score: 52.4 bits (124), Expect = 3.420e-6
Identity = 24/62 (38.71%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:   10 HALRALSVLCVCIGPEEEEAFRSLRRPLRSLITRSRHEGVRVGAVRTLALACFICSSDDDNT 195
            H  R L+++ V +G +EE  F+     L  L   SR   V+  ++R LAL CF+CS +D+NT
Sbjct:  118 HGARVLALMSVILGGDEERFFQRASNVLEPLAKTSRSAAVKAASIRALALICFVCSVEDENT 179
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BLAST of mRNA_Ecto-sp8_S_contig93984.30899.1 vs. uniprot
Match: A0A5D6Y1M3_9STRA (IFRD domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1M3_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 1.190e-5
Identity = 24/66 (36.36%), Postives = 37/66 (56.06%), Query Frame = 1 
Query:   10 HALRALSVLCVCIGPEEEEAFRSLRRPLRSLITRSRHEGVRVGAVRTLALACFICSSDDDNTSETL 207
            H  R L+++ +  G +EE  F+     L  L   SR   V+  ++R LA+ CF+CS +D+NT E L
Sbjct:   88 HGARVLAIMALIQGGDEERFFQRASNVLSPLAKASRSAAVKAASMRALAVICFVCSVEDENTQELL 153
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BLAST of mRNA_Ecto-sp8_S_contig93984.30899.1 vs. uniprot
Match: A0A8K1CI02_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CI02_PYTOL)

HSP 1 Score: 48.5 bits (114), Expect = 7.840e-5
Identity = 21/67 (31.34%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:    1 QGAHALRALSVLCVCIGPEEEEAFRSLRRPLRSLITRSRHEGVRVGAVRTLALACFICSSDDDNTSE 201
            +  +  + L+V+ + IG ++E  F+  +  L  L   SR + V+  A+R LA+ CFIC  +++N+ E
Sbjct:  107 EAVYGAKILAVMSIIIGEDDERFFQRGKNVLEPLAKTSRSQKVKAAAIRALAMTCFICGVEEENSDE 173
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig93984.30899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LR70_ECTSI6.140e-37100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2XZE4_9STRA6.160e-1453.85Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YVX4_9STRA1.550e-1057.41Interferon-related developmental regulator-domain-... [more]
A0A662XRW8_9STRA7.220e-743.55IFRD domain-containing protein n=2 Tax=Nothophytop... [more]
M4BXU3_HYAAE3.400e-639.68IFRD domain-containing protein n=1 Tax=Hyaloperono... [more]
K3WKD3_GLOUD3.420e-638.71IFRD domain-containing protein n=1 Tax=Globisporan... [more]
A0A5D6Y1M3_9STRA1.190e-536.36IFRD domain-containing protein n=1 Tax=Pythium bra... [more]
A0A8K1CI02_PYTOL7.840e-531.34Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig93984contigEcto-sp8_S_contig93984:2..208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score139.0
Seed ortholog evalue8.1e-31
Seed eggNOG ortholog2880.D8LR70
Preferred nameIFRD1
Model size207
Hectar predicted targeting categoryother localisation
GOsGO:0001085,GO:0001558,GO:0001709,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006355,GO:0006357,GO:0006950,GO:0007275,GO:0007399,GO:0007405,GO:0007518,GO:0008134,GO:0008150,GO:0008283,GO:0008361,GO:0009611,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010721,GO:0010769,GO:0010771,GO:0010975,GO:0010977,GO:0014009,GO:0014706,GO:0016043,GO:0019219,GO:0019222,GO:0022008,GO:0022603,GO:0022604,GO:0030154,GO:0030308,GO:0030516,GO:0030517,GO:0031099,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031344,GO:0031345,GO:0032501,GO:0032502,GO:0032535,GO:0040007,GO:0040008,GO:0042060,GO:0042063,GO:0042246,GO:0042692,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043403,GO:0044093,GO:0044424,GO:0044464,GO:0045165,GO:0045445,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0045893,GO:0045926,GO:0045935,GO:0045944,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048589,GO:0048625,GO:0048638,GO:0048640,GO:0048670,GO:0048671,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050770,GO:0050771,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051090,GO:0051091,GO:0051093,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051960,GO:0051961,GO:0060255,GO:0060284,GO:0060537,GO:0061061,GO:0061351,GO:0061387,GO:0061629,GO:0065007,GO:0065008,GO:0065009,GO:0071840,GO:0072089,GO:0080090,GO:0090066,GO:0120035,GO:1902680,GO:1903506,GO:1903508,GO:2000026,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.RNA polymerase II sequence-specific DNA-binding transcription factor binding
EggNOG OGsKOG2842@1,KOG2842@2759
Cds size207
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145296.4456296-CDS-Ecto-sp8_S_contig93984:1..2081681145296.4456296-CDS-Ecto-sp8_S_contig93984:1..208Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig93984 2..208 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig93984.30899.1prot_Ecto-sp8_S_contig93984.30899.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig93984 2..208 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig93984.30899.1

>prot_Ecto-sp8_S_contig93984.30899.1 ID=prot_Ecto-sp8_S_contig93984.30899.1|Name=mRNA_Ecto-sp8_S_contig93984.30899.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=69bp
QGAHALRALSVLCVCIGPEEEEAFRSLRRPLRSLITRSRHEGVRVGAVRT
LALACFICSSDDDNTSETL
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mRNA from alignment at Ecto-sp8_S_contig93984:2..208-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig93984.30899.1 ID=mRNA_Ecto-sp8_S_contig93984.30899.1|Name=mRNA_Ecto-sp8_S_contig93984.30899.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=207bp|location=Sequence derived from alignment at Ecto-sp8_S_contig93984:2..208- (Ectocarpus species8 EcLAC_412)
CAGGGGGCTCACGCGCTGCGAGCGCTGTCGGTGCTGTGCGTGTGCATCGG
GCCGGAGGAGGAGGAGGCGTTTCGGTCCCTTCGGCGGCCGCTGCGGAGCC
TCATCACCCGCAGCCGCCATGAAGGGGTGAGGGTCGGGGCGGTGCGCACC
CTTGCGCTGGCATGCTTCATCTGCTCGAGCGACGACGACAACACCAGCGA
GACCCTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig93984:2..208-

>mRNA_Ecto-sp8_S_contig93984.30899.1 ID=mRNA_Ecto-sp8_S_contig93984.30899.1|Name=mRNA_Ecto-sp8_S_contig93984.30899.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp8_S_contig93984:2..208- (Ectocarpus species8 EcLAC_412)
CAGGGGGCTCACGCGCTGCGAGCGCTGTCGGTGCTGTGCGTGTGCATCGG
GCCGGAGGAGGAGGAGGCGTTTCGGTCCCTTCGGCGGCCGCTGCGGAGCC
TCATCACCCGCAGCCGCCATGAAGGGGTGAGGGTCGGGGCGGTGCGCACC
CTTGCGCTGGCATGCTTCATCTGCTCGAGCGACGACGACAACACCAGCGA
GACCCTG
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