mRNA_Ecto-sp8_S_contig93982.30898.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig93982.30898.1
Unique NamemRNA_Ecto-sp8_S_contig93982.30898.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig93982.30898.1 vs. uniprot
Match: UPI0018A2B798 (hypothetical protein n=1 Tax=Roseobacter sp. MH60115 TaxID=2785324 RepID=UPI0018A2B798)

HSP 1 Score: 58.2 bits (139), Expect = 1.330e-7
Identity = 37/111 (33.33%), Postives = 62/111 (55.86%), Query Frame = 1 
Query:   55 GRNHGVLER-----VDTDLIRAGSDKNKKSDLVDY--ILTQNPEYAAIFENTMQHVREAETAVDRVLEIAAARFKTSQAKFDDLMNKAAELPDGDKIARSEKDGLVYTFDG 366
            GR+ G +ER     +  D I       K++ L +   ++  NP YAA+FE T+Q + +A+  +D +L    A  K + A  DD +++AA LPDG K+ + +++G + T DG
Sbjct:   32 GRDVGRIERFLNADIREDKINGKRGTRKEAGLTNLQILMMNNPAYAALFEETVQVLSDAQRRLDDLLRRVQAEVKHANAALDDKLDRAARLPDGTKVFK-DQNGDIRTEDG 141
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BLAST of mRNA_Ecto-sp8_S_contig93982.30898.1 vs. uniprot
Match: A0A1E2RWT6_9HYPH (Uncharacterized protein n=1 Tax=Methyloligella halotolerans TaxID=1177755 RepID=A0A1E2RWT6_9HYPH)

HSP 1 Score: 53.5 bits (127), Expect = 6.330e-6
Identity = 35/122 (28.69%), Postives = 62/122 (50.82%), Query Frame = 1 
Query:   13 DAADMAAALVGVSNGRNHGVLERVDTDLIRAGSDKNKKS----DLVDYILTQNPEYAAIFENTMQHVREAETAVDRVLEIAAARFKTSQAKFDDLMNKAAELPDGDKIARSEKDGLVYTFDG 366
            D  D+   + G   GR    L   + + I+ G  K+++       + ++L  +PEYAA++E+T   +REAE A +R LE A      ++      ++ AA L DG ++ + +++G V T  G
Sbjct:   23 DFEDLQNEMAGRETGRLARFLSPDERERIKDGKSKSERQAEAMTRLQWMLANDPEYAALYEDTFAKLREAEQAAERALERARLALAKAEQDLQTTLDSAARLQDGTRVFK-DQNGQVRTEHG 143
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BLAST of mRNA_Ecto-sp8_S_contig93982.30898.1 vs. uniprot
Match: A0A2E6QI06_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6QI06_9PROT)

HSP 1 Score: 52.8 bits (125), Expect = 1.080e-5
Identity = 26/74 (35.14%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:  145 ILTQNPEYAAIFENTMQHVREAETAVDRVLEIAAARFKTSQAKFDDLMNKAAELPDGDKIARSEKDGLVYTFDG 366
            +L  +PEYAA++E+T   +R AE A +  L  A      +    D+ +++A++LPDG +  R + DG V++ DG
Sbjct:   55 LLQNDPEYAALYEDTFDKLRAAEAATETALARARDGLAAANGMLDETLDRASQLPDGTRAFR-DADGNVFSEDG 127
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BLAST of mRNA_Ecto-sp8_S_contig93982.30898.1 vs. uniprot
Match: F9ZK83_9PROT (Uncharacterized protein n=1 Tax=Nitrosomonas sp. AL212 TaxID=153948 RepID=F9ZK83_9PROT)

HSP 1 Score: 52.8 bits (125), Expect = 1.370e-5
Identity = 34/110 (30.91%), Postives = 57/110 (51.82%), Query Frame = 1 
Query:   49 SNGRNHGVLER----VDTDLIRAGSDKNKKSDLVDYILTQNPEYAAIFENTMQHVREAETAVDRVLEIAAARFKTSQAKFDDLMNKAAELPDGDKIARSEKDGLVYTFDG 366
            S GR  G ++R    V    + A  +K+++       L Q+P YA I+ + +  V  AE A D+         + ++ +  +L++KAA+LPDG KI +S  DG +Y+  G
Sbjct:   33 SAGRETGRIKRFNLPVSDKALNAEKEKDERRFSALMRLLQDPHYARIYHHAVAAVTAAEEATDKARRKLEQESEFAEKRRRELLDKAAQLPDGTKIFQSLSDGRIYSEHG 142
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BLAST of mRNA_Ecto-sp8_S_contig93982.30898.1 vs. uniprot
Match: A0A8G2BKV7_9PROT (Uncharacterized protein n=1 Tax=Thalassobaculum litoreum DSM 18839 TaxID=1123362 RepID=A0A8G2BKV7_9PROT)

HSP 1 Score: 52.0 bits (123), Expect = 2.250e-5
Identity = 26/74 (35.14%), Postives = 41/74 (55.41%), Query Frame = 1 
Query:  145 ILTQNPEYAAIFENTMQHVREAETAVDRVLEIAAARFKTSQAKFDDLMNKAAELPDGDKIARSEKDGLVYTFDG 366
            +L  +P Y A++ +T   +R AETA +  LE A A    ++      ++ AA LPDG ++ R + DG + T DG
Sbjct:   72 VLLNDPTYRALYNDTFDQLRTAETATEAALEEAHAALSQTETDLQSTLDNAARLPDGTRVFR-DADGNIRTEDG 144
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig93982.30898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI0018A2B7981.330e-733.33hypothetical protein n=1 Tax=Roseobacter sp. MH601... [more]
A0A1E2RWT6_9HYPH6.330e-628.69Uncharacterized protein n=1 Tax=Methyloligella hal... [more]
A0A2E6QI06_9PROT1.080e-535.14Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
F9ZK83_9PROT1.370e-530.91Uncharacterized protein n=1 Tax=Nitrosomonas sp. A... [more]
A0A8G2BKV7_9PROT2.250e-535.14Uncharacterized protein n=1 Tax=Thalassobaculum li... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig93982contigEcto-sp8_S_contig93982:8..373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size366
Hectar predicted targeting categoryother localisation
Exons1
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145296.4006174-CDS-Ecto-sp8_S_contig93982:7..3491681145296.4006174-CDS-Ecto-sp8_S_contig93982:7..349Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig93982 8..349 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145296.4115572-UTR-Ecto-sp8_S_contig93982:349..3731681145296.4115572-UTR-Ecto-sp8_S_contig93982:349..373Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig93982 350..373 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig93982.30898.1prot_Ecto-sp8_S_contig93982.30898.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig93982 8..349 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig93982.30898.1

>prot_Ecto-sp8_S_contig93982.30898.1 ID=prot_Ecto-sp8_S_contig93982.30898.1|Name=mRNA_Ecto-sp8_S_contig93982.30898.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=114bp
MAAALVGVSNGRNHGVLERVDTDLIRAGSDKNKKSDLVDYILTQNPEYAA
IFENTMQHVREAETAVDRVLEIAAARFKTSQAKFDDLMNKAAELPDGDKI
ARSEKDGLVYTFDG
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mRNA from alignment at Ecto-sp8_S_contig93982:8..373-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig93982.30898.1 ID=mRNA_Ecto-sp8_S_contig93982.30898.1|Name=mRNA_Ecto-sp8_S_contig93982.30898.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=366bp|location=Sequence derived from alignment at Ecto-sp8_S_contig93982:8..373- (Ectocarpus species8 EcLAC_412)
CAATCCCAAGCGGATGCGGCTGATATGGCGGCGGCGTTGGTTGGGGTTAG
TAATGGGCGCAATCATGGTGTGCTTGAGCGTGTTGACACTGATCTCATCC
GCGCGGGCAGCGACAAGAATAAGAAGTCTGATCTGGTCGATTATATCCTT
ACCCAAAATCCCGAATATGCGGCGATATTTGAAAATACGATGCAGCATGT
GCGGGAAGCTGAAACTGCGGTTGATCGCGTTCTTGAAATCGCAGCGGCGC
GATTTAAAACCAGCCAAGCAAAGTTTGACGACTTAATGAATAAAGCCGCC
GAGTTGCCAGATGGAGACAAGATTGCGCGCTCTGAGAAAGATGGGCTGGT
TTATACGTTTGATGGT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig93982:8..373-

>mRNA_Ecto-sp8_S_contig93982.30898.1 ID=mRNA_Ecto-sp8_S_contig93982.30898.1|Name=mRNA_Ecto-sp8_S_contig93982.30898.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp8_S_contig93982:8..373- (Ectocarpus species8 EcLAC_412)
ATGGCGGCGGCGTTGGTTGGGGTTAGTAATGGGCGCAATCATGGTGTGCT
TGAGCGTGTTGACACTGATCTCATCCGCGCGGGCAGCGACAAGAATAAGA
AGTCTGATCTGGTCGATTATATCCTTACCCAAAATCCCGAATATGCGGCG
ATATTTGAAAATACGATGCAGCATGTGCGGGAAGCTGAAACTGCGGTTGA
TCGCGTTCTTGAAATCGCAGCGGCGCGATTTAAAACCAGCCAAGCAAAGT
TTGACGACTTAATGAATAAAGCCGCCGAGTTGCCAGATGGAGACAAGATT
GCGCGCTCTGAGAAAGATGGGCTGGTTTATACGTTTGATGGT
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