mRNA_Ecto-sp8_S_contig93890.30881.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig93890.30881.1
Unique NamemRNA_Ecto-sp8_S_contig93890.30881.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig93890.30881.1 vs. uniprot
Match: D7FJK0_ECTSI (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJK0_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 5.900e-36
Identity = 71/76 (93.42%), Postives = 72/76 (94.74%), Query Frame = 1
Query:    1 MTKEPEQHRLRTSTTKGRALQSALEALNPSNAPDVLKQRTMEFTQVLQFVTNSVANASGGSLYLCGVPGTGKTQTM 228
            MTKEPEQHRL TSTTKGRALQSALEALNPSNAPDVLK+RT EF QVLQFVTNSVA ASGGSLYLCGVPGTGKTQTM
Sbjct:  525 MTKEPEQHRLLTSTTKGRALQSALEALNPSNAPDVLKRRTTEFNQVLQFVTNSVAKASGGSLYLCGVPGTGKTQTM 600          
BLAST of mRNA_Ecto-sp8_S_contig93890.30881.1 vs. uniprot
Match: A0A8K0KMM2_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0KMM2_LADFU)

HSP 1 Score: 56.6 bits (135), Expect = 1.480e-7
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 1
Query:   43 TKGRALQSALEALNPSNAPDVLKQRTMEFTQVLQFVTNSVANASGGSLYLCGVPGTGKTQTM 228
            +K  AL+     L+ S+ P+ L  R  EFT +  FV + + + +GG +Y+CGVPGTGKT T+
Sbjct:  447 SKSSALEEVRARLHVSSIPNCLPCREQEFTSIYSFVEDKILDGAGGCMYVCGVPGTGKTATV 508          
BLAST of mRNA_Ecto-sp8_S_contig93890.30881.1 vs. uniprot
Match: A0A0K9NRA3_ZOSMR (Cell division control protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NRA3_ZOSMR)

HSP 1 Score: 55.1 bits (131), Expect = 5.080e-7
Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   58 LQSALEALNPSNAPDVLKQRTMEFTQVLQFVTNSVANASGGSLYLCGVPGTGKTQTM 228
            ++S  EAL+ SN P  +  R  E  +VLQF  +SV + + GSLY+CG+PGTGKT ++
Sbjct:   88 IKSVKEALHVSNTPTTVACREQEQNKVLQFCKSSVQSQNSGSLYVCGLPGTGKTLSI 144          
BLAST of mRNA_Ecto-sp8_S_contig93890.30881.1 vs. uniprot
Match: UPI00187DBBF0 (origin recognition complex subunit 1-like n=1 Tax=Bradysia coprophila TaxID=38358 RepID=UPI00187DBBF0)

HSP 1 Score: 55.1 bits (131), Expect = 5.090e-7
Identity = 25/56 (44.64%), Postives = 37/56 (66.07%), Query Frame = 1
Query:   61 QSALEALNPSNAPDVLKQRTMEFTQVLQFVTNSVANASGGSLYLCGVPGTGKTQTM 228
            Q A+ AL+ S  P +L  R  EF ++L  +T  + + SGG +Y+CGVPGTGK+ T+
Sbjct:  116 QRAINALHVSMVPKILPCREKEFKEILGAITTQILDNSGGCMYVCGVPGTGKSSTV 171          
BLAST of mRNA_Ecto-sp8_S_contig93890.30881.1 vs. uniprot
Match: A0A814AXM1_9BILA (Origin recognition complex subunit 1 n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A814AXM1_9BILA)

HSP 1 Score: 52.4 bits (124), Expect = 4.540e-6
Identity = 22/49 (44.90%), Postives = 33/49 (67.35%), Query Frame = 1
Query:   79 LNPSNAPDVLKQRTMEFTQVLQFVTNSVANASGGSLYLCGVPGTGKTQT 225
            L+ +N PD L  R  +F+ +  F+  ++ N +GG +Y+CGVPGTGKT T
Sbjct:  109 LHVANTPDCLPCRDKQFSDIYNFIETNLRNQTGGCMYVCGVPGTGKTLT 157          
BLAST of mRNA_Ecto-sp8_S_contig93890.30881.1 vs. uniprot
Match: A0A3M7T0F7_BRAPC (Origin recognition complex subunit 1 n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7T0F7_BRAPC)

HSP 1 Score: 52.4 bits (124), Expect = 4.570e-6
Identity = 22/49 (44.90%), Postives = 33/49 (67.35%), Query Frame = 1
Query:   79 LNPSNAPDVLKQRTMEFTQVLQFVTNSVANASGGSLYLCGVPGTGKTQT 225
            L+ +N PD L  R  +F+ +  F+  ++ N +GG +Y+CGVPGTGKT T
Sbjct:  170 LHVANTPDCLPCRDKQFSDIYNFIETNLRNQTGGCMYVCGVPGTGKTLT 218          
BLAST of mRNA_Ecto-sp8_S_contig93890.30881.1 vs. uniprot
Match: A0A1R2AP42_9CILI (Origin recognition complex subunit 1 n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2AP42_9CILI)

HSP 1 Score: 51.2 bits (121), Expect = 1.180e-5
Identity = 27/59 (45.76%), Postives = 37/59 (62.71%), Query Frame = 1
Query:   55 ALQSALEALNPSNAPDVLKQRTMEFTQVLQFVTNSVA-NASGGSLYLCGVPGTGKTQTM 228
            +L  A+  L  S+AP  L  RT E  ++L+F+ NS+    S  SLY+CG+PGTGKT T 
Sbjct:  229 SLHKAISLLTLSSAPSNLVGRTQEKQEILEFLENSIKIGHSANSLYICGMPGTGKTATF 287          
BLAST of mRNA_Ecto-sp8_S_contig93890.30881.1 vs. uniprot
Match: A0A6B2L392_9EUKA (AAA domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L392_9EUKA)

HSP 1 Score: 50.8 bits (120), Expect = 1.590e-5
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 1
Query:   58 LQSALEALNPSNAPDVLKQRTMEFTQVLQFVTNSVANASGGSLYLCGVPGTGKTQTM 228
            L SA   L+PS +P+ L  R  E  Q+  F  N+++  S GSLY+ GVPGTGKT T+
Sbjct:   70 LSSAKLRLSPSFSPECLVGREYEKEQIELFFRNNISKCSPGSLYVAGVPGTGKTATL 126          
BLAST of mRNA_Ecto-sp8_S_contig93890.30881.1 vs. uniprot
Match: A0A8J5B832_9DIPT (Origin recognition complex subunit 1 n=1 Tax=Bradysia odoriphaga TaxID=1564500 RepID=A0A8J5B832_9DIPT)

HSP 1 Score: 50.4 bits (119), Expect = 2.180e-5
Identity = 24/56 (42.86%), Postives = 35/56 (62.50%), Query Frame = 1
Query:   61 QSALEALNPSNAPDVLKQRTMEFTQVLQFVTNSVANASGGSLYLCGVPGTGKTQTM 228
            Q A+ AL+ S  P VL  R  E  ++L  +T  + +  GG +Y+CGVPGTGK+ T+
Sbjct:  119 QRAINALHVSMVPKVLPCRDKEVKEILAAITTKILDNIGGCVYVCGVPGTGKSSTV 174          
BLAST of mRNA_Ecto-sp8_S_contig93890.30881.1 vs. uniprot
Match: A0A2G5CLS9_AQUCA (Cell division control protein n=3 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5CLS9_AQUCA)

HSP 1 Score: 49.3 bits (116), Expect = 5.590e-5
Identity = 25/52 (48.08%), Postives = 33/52 (63.46%), Query Frame = 1
Query:   73 EALNPSNAPDVLKQRTMEFTQVLQFVTNSVANASGGSLYLCGVPGTGKTQTM 228
            EAL+ S+AP  +  R  E  +V +F   S+    GGSLY+CG PGTGKT +M
Sbjct:  116 EALHVSSAPLAIVCREDEQKKVFEFCKTSIQEGRGGSLYVCGCPGTGKTLSM 167          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig93890.30881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FJK0_ECTSI5.900e-3693.42AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A8K0KMM2_LADFU1.480e-741.94Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
A0A0K9NRA3_ZOSMR5.080e-747.37Cell division control protein n=1 Tax=Zostera mari... [more]
UPI00187DBBF05.090e-744.64origin recognition complex subunit 1-like n=1 Tax=... [more]
A0A814AXM1_9BILA4.540e-644.90Origin recognition complex subunit 1 n=1 Tax=Brach... [more]
A0A3M7T0F7_BRAPC4.570e-644.90Origin recognition complex subunit 1 n=1 Tax=Brach... [more]
A0A1R2AP42_9CILI1.180e-545.76Origin recognition complex subunit 1 n=1 Tax=Stent... [more]
A0A6B2L392_9EUKA1.590e-547.37AAA domain-containing protein n=1 Tax=Arcella inte... [more]
A0A8J5B832_9DIPT2.180e-542.86Origin recognition complex subunit 1 n=1 Tax=Brady... [more]
A0A2G5CLS9_AQUCA5.590e-548.08Cell division control protein n=3 Tax=Thalictroide... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig93890contigEcto-sp8_S_contig93890:3..230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score139.4
Seed ortholog evalue6.8e-31
Seed eggNOG ortholog2880.D7FJK0
Preferred nameCDC6
Model size228
KEGG koko:K02213,ko:K02603,ko:K02606
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000076,GO:0000079,GO:0000082,GO:0000083,GO:0000166,GO:0000228,GO:0000278,GO:0000793,GO:0000794,GO:0000922,GO:0001932,GO:0001934,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006275,GO:0006355,GO:0006725,GO:0006807,GO:0007049,GO:0007088,GO:0007089,GO:0007346,GO:0008150,GO:0008152,GO:0008156,GO:0008284,GO:0008285,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010965,GO:0015630,GO:0019219,GO:0019220,GO:0019222,GO:0019899,GO:0019900,GO:0022402,GO:0030071,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031399,GO:0031401,GO:0031570,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032465,GO:0032467,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033674,GO:0034641,GO:0034645,GO:0036094,GO:0042127,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045737,GO:0045786,GO:0045787,GO:0045859,GO:0045860,GO:0045931,GO:0045934,GO:0045937,GO:0046483,GO:0048145,GO:0048146,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051053,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051233,GO:0051246,GO:0051247,GO:0051252,GO:0051302,GO:0051338,GO:0051347,GO:0051726,GO:0051781,GO:0051783,GO:0051983,GO:0051984,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0090068,GO:0090304,GO:0097159,GO:1900087,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902806,GO:1902808,GO:1903047,GO:1903506,GO:1904029,GO:1904031,GO:1905818,GO:2000045,GO:2000112,GO:2000113,GO:2001141
Exons1
EggNOG free text desc.DNA replication initiation
EggNOG OGsCOG1474@1,KOG2227@2759
Cds size228
COG Functional cat.LO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145294.8386788-CDS-Ecto-sp8_S_contig93890:2..2301681145294.8386788-CDS-Ecto-sp8_S_contig93890:2..230Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig93890 3..230 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig93890.30881.1prot_Ecto-sp8_S_contig93890.30881.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig93890 3..230 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig93890.30881.1

>prot_Ecto-sp8_S_contig93890.30881.1 ID=prot_Ecto-sp8_S_contig93890.30881.1|Name=mRNA_Ecto-sp8_S_contig93890.30881.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=76bp
MTKEPEQHRLRTSTTKGRALQSALEALNPSNAPDVLKQRTMEFTQVLQFV
TNSVANASGGSLYLCGVPGTGKTQTM
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mRNA from alignment at Ecto-sp8_S_contig93890:3..230-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig93890.30881.1 ID=mRNA_Ecto-sp8_S_contig93890.30881.1|Name=mRNA_Ecto-sp8_S_contig93890.30881.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=228bp|location=Sequence derived from alignment at Ecto-sp8_S_contig93890:3..230- (Ectocarpus species8 EcLAC_412)
ATGACGAAGGAGCCAGAGCAGCACAGGCTAAGAACCTCAACGACGAAAGG GCGAGCCTTGCAGTCGGCGTTAGAGGCCTTGAACCCTTCCAACGCACCAG ATGTTTTGAAGCAGCGTACGATGGAGTTTACCCAAGTGCTGCAGTTCGTC ACCAACAGCGTCGCGAATGCATCTGGGGGCAGCTTGTACCTCTGCGGCGT TCCTGGAACAGGCAAGACGCAGACCATG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig93890:3..230-

>mRNA_Ecto-sp8_S_contig93890.30881.1 ID=mRNA_Ecto-sp8_S_contig93890.30881.1|Name=mRNA_Ecto-sp8_S_contig93890.30881.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp8_S_contig93890:3..230- (Ectocarpus species8 EcLAC_412)
ATGACGAAGGAGCCAGAGCAGCACAGGCTAAGAACCTCAACGACGAAAGG
GCGAGCCTTGCAGTCGGCGTTAGAGGCCTTGAACCCTTCCAACGCACCAG
ATGTTTTGAAGCAGCGTACGATGGAGTTTACCCAAGTGCTGCAGTTCGTC
ACCAACAGCGTCGCGAATGCATCTGGGGGCAGCTTGTACCTCTGCGGCGT
TCCTGGAACAGGCAAGACGCAGACCATG
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