mRNA_Ecto-sp8_S_contig93851.30877.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig93851.30877.1
Unique NamemRNA_Ecto-sp8_S_contig93851.30877.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig93851.30877.1 vs. uniprot
Match: D7G4I0_ECTSI (Senescence domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I0_ECTSI)

HSP 1 Score: 357 bits (916), Expect = 9.930e-122
Identity = 187/191 (97.91%), Postives = 189/191 (98.95%), Query Frame = 1 
Query:    1 MTSKLPPPSEKQPPLGDLPAGVPYEAILTAVGTLAEQSPSAGGGVSATGTVNVVQGRVDENPEAGFFGFLSVENLNVPLVSTSRSSRVGPGVYRVCIPGKEFLLTLDQRTEPPIVEGMENVLRWFTAFEGDEIPRGVTPAGVKATGVKGVIESAGVAGAAMIMRVGEALNASIKERTEAKLAAQADQPAKK 573
            MTSKLPPP EKQPPLGDLPAGVPYEAILTAVGTLAEQSPSAGGGVSATG VNV+QGRVDENPEAGFFGFLSVENLNVPLVSTSRSSRVGPGVYRVCIPGKEFLLTLDQRTEPPIVEGMENVLRWFTAFEGDE+PRGVTPAGVKATGVKGVIESAGVAGAAMIMRVGEALNASIKERTEAKLAAQADQPAKK
Sbjct:    1 MTSKLPPPPEKQPPLGDLPAGVPYEAILTAVGTLAEQSPSAGGGVSATGAVNVIQGRVDENPEAGFFGFLSVENLNVPLVSTSRSSRVGPGVYRVCIPGKEFLLTLDQRTEPPIVEGMENVLRWFTAFEGDEMPRGVTPAGVKATGVKGVIESAGVAGAAMIMRVGEALNASIKERTEAKLAAQADQPAKK 191
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig93851.30877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4I0_ECTSI9.930e-12297.91Senescence domain-containing protein n=2 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig93851contigEcto-sp8_S_contig93851:1..573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size573
Hectar predicted targeting categoryother localisation
Exons1
Cds size573
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145294.5613697-CDS-Ecto-sp8_S_contig93851:0..5731681145294.5613697-CDS-Ecto-sp8_S_contig93851:0..573Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig93851 1..573 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig93851.30877.1prot_Ecto-sp8_S_contig93851.30877.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig93851 1..573 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig93851.30877.1

>prot_Ecto-sp8_S_contig93851.30877.1 ID=prot_Ecto-sp8_S_contig93851.30877.1|Name=mRNA_Ecto-sp8_S_contig93851.30877.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=191bp
MTSKLPPPSEKQPPLGDLPAGVPYEAILTAVGTLAEQSPSAGGGVSATGT
VNVVQGRVDENPEAGFFGFLSVENLNVPLVSTSRSSRVGPGVYRVCIPGK
EFLLTLDQRTEPPIVEGMENVLRWFTAFEGDEIPRGVTPAGVKATGVKGV
IESAGVAGAAMIMRVGEALNASIKERTEAKLAAQADQPAKK
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mRNA from alignment at Ecto-sp8_S_contig93851:1..573-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig93851.30877.1 ID=mRNA_Ecto-sp8_S_contig93851.30877.1|Name=mRNA_Ecto-sp8_S_contig93851.30877.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=573bp|location=Sequence derived from alignment at Ecto-sp8_S_contig93851:1..573- (Ectocarpus species8 EcLAC_412)
ATGACGAGCAAGCTGCCGCCGCCATCGGAGAAACAGCCGCCTCTGGGCGA
CCTGCCCGCGGGGGTCCCGTACGAGGCCATCCTCACCGCGGTGGGTACCC
TGGCGGAGCAGTCCCCGTCGGCGGGCGGCGGGGTTTCCGCCACGGGGACG
GTGAACGTGGTCCAGGGGAGGGTGGACGAGAACCCCGAGGCCGGCTTCTT
CGGCTTCCTGTCCGTCGAGAACCTCAACGTCCCGCTCGTGTCGACGTCCC
GGTCCTCGCGCGTCGGCCCGGGCGTCTACCGCGTATGCATCCCGGGCAAG
GAGTTCCTGCTCACGCTGGACCAGCGCACGGAGCCCCCGATCGTCGAGGG
CATGGAGAACGTCCTGCGGTGGTTCACGGCCTTTGAGGGAGACGAGATAC
CCCGCGGCGTCACGCCCGCAGGTGTCAAGGCCACCGGCGTCAAGGGCGTG
ATCGAGAGCGCAGGCGTGGCCGGAGCGGCGATGATCATGCGGGTGGGCGA
GGCGCTGAACGCGAGCATCAAGGAGCGGACCGAGGCCAAGCTGGCGGCGC
AGGCCGACCAGCCGGCGAAGAAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig93851:1..573-

>mRNA_Ecto-sp8_S_contig93851.30877.1 ID=mRNA_Ecto-sp8_S_contig93851.30877.1|Name=mRNA_Ecto-sp8_S_contig93851.30877.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=573bp|location=Sequence derived from alignment at Ecto-sp8_S_contig93851:1..573- (Ectocarpus species8 EcLAC_412)
ATGACGAGCAAGCTGCCGCCGCCATCGGAGAAACAGCCGCCTCTGGGCGA
CCTGCCCGCGGGGGTCCCGTACGAGGCCATCCTCACCGCGGTGGGTACCC
TGGCGGAGCAGTCCCCGTCGGCGGGCGGCGGGGTTTCCGCCACGGGGACG
GTGAACGTGGTCCAGGGGAGGGTGGACGAGAACCCCGAGGCCGGCTTCTT
CGGCTTCCTGTCCGTCGAGAACCTCAACGTCCCGCTCGTGTCGACGTCCC
GGTCCTCGCGCGTCGGCCCGGGCGTCTACCGCGTATGCATCCCGGGCAAG
GAGTTCCTGCTCACGCTGGACCAGCGCACGGAGCCCCCGATCGTCGAGGG
CATGGAGAACGTCCTGCGGTGGTTCACGGCCTTTGAGGGAGACGAGATAC
CCCGCGGCGTCACGCCCGCAGGTGTCAAGGCCACCGGCGTCAAGGGCGTG
ATCGAGAGCGCAGGCGTGGCCGGAGCGGCGATGATCATGCGGGTGGGCGA
GGCGCTGAACGCGAGCATCAAGGAGCGGACCGAGGCCAAGCTGGCGGCGC
AGGCCGACCAGCCGGCGAAGAAG
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