mRNA_Ecto-sp8_S_contig93842.30875.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig93842.30875.1
Unique NamemRNA_Ecto-sp8_S_contig93842.30875.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig93842.30875.1 vs. uniprot
Match: A0A6H5JHM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM5_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 1.450e-47
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1
Query:    1 DPASALAANPEWTRYAFMFPVGILVATCAQTAGIGGAALTAPVFLLGFPLLGPDYPLHSVAASVATAILCEAFGFSSG 234
            DPASALAANPEWTRYAFMFPVGILVATCAQTAGIGGAALTAPVFLLGFPLLGPDYPLHSVAASVATAILCEAFGFSSG
Sbjct:  140 DPASALAANPEWTRYAFMFPVGILVATCAQTAGIGGAALTAPVFLLGFPLLGPDYPLHSVAASVATAILCEAFGFSSG 217          
BLAST of mRNA_Ecto-sp8_S_contig93842.30875.1 vs. uniprot
Match: D7FW33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW33_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 7.340e-46
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1
Query:    1 DPASALAANPEWTRYAFMFPVGILVATCAQTAGIGGAALTAPVFLLGFPLLGPDYPLHSVAASVATAILCEAFGFSSG 234
            DPASALAANPEWTRYAFMFPVGILVATCAQTAGIGGAALTAPVFLLGFPLLGPDYPLHSVAASVATAILCEAFGFSSG
Sbjct:  142 DPASALAANPEWTRYAFMFPVGILVATCAQTAGIGGAALTAPVFLLGFPLLGPDYPLHSVAASVATAILCEAFGFSSG 219          
BLAST of mRNA_Ecto-sp8_S_contig93842.30875.1 vs. uniprot
Match: A0A2E7FAG1_9PROT (Probable membrane transporter protein n=2 Tax=unclassified Rhodospirillaceae TaxID=41296 RepID=A0A2E7FAG1_9PROT)

HSP 1 Score: 95.5 bits (236), Expect = 5.880e-22
Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 1
Query:   31 EWTRYAFMFPVGILVATCAQTAGIGGAALTAPVFLLGFPLLGPDYPLHSVAASVATAILCEAFGFSSG 234
            +WT Y FMFPV ILVAT A  +GIGGAA+ AP+FL+ FPLLGP+YPL S+AA++  A+  E FGFSSG
Sbjct:    7 DWTLYWFMFPVAILVATSAMLSGIGGAAIFAPIFLIIFPLLGPEYPLGSLAAAIGVALFTEVFGFSSG 74          
BLAST of mRNA_Ecto-sp8_S_contig93842.30875.1 vs. uniprot
Match: A0A7S3ZRX1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZRX1_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.240e-21
Identity = 47/77 (61.04%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    4 PASALAANPEWTRYAFMFPVGILVATCAQTAGIGGAALTAPVFLLGFPLLGPDYPLHSVAASVATAILCEAFGFSSG 234
            PA+A+A       Y+FM P    VATC Q  GIGGAAL +P+FLL FPLLGPDYPL S AA+VA+A+L E FGF+SG
Sbjct:   57 PAAAVA------DYSFMLPASTAVATCCQLCGIGGAALFSPIFLLVFPLLGPDYPLDSAAAAVASALLTETFGFASG 127          
BLAST of mRNA_Ecto-sp8_S_contig93842.30875.1 vs. uniprot
Match: A0A2S6TM75_9PROT (Probable membrane transporter protein n=5 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2S6TM75_9PROT)

HSP 1 Score: 94.4 bits (233), Expect = 1.540e-21
Identity = 42/68 (61.76%), Postives = 53/68 (77.94%), Query Frame = 1
Query:   31 EWTRYAFMFPVGILVATCAQTAGIGGAALTAPVFLLGFPLLGPDYPLHSVAASVATAILCEAFGFSSG 234
            +WT Y FMFPV I VAT A  +GIGGAA+ AP+F++ FPLLGP+YP  S+AA++  A+L E FGFSSG
Sbjct:    7 DWTLYWFMFPVAICVATSAMLSGIGGAAIFAPIFMIIFPLLGPEYPFESIAAAIGVALLTEVFGFSSG 74          
BLAST of mRNA_Ecto-sp8_S_contig93842.30875.1 vs. uniprot
Match: C1EBA3_MICCC (4-toluene sulfonate uptake permease n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EBA3_MICCC)

HSP 1 Score: 94.4 bits (233), Expect = 1.660e-21
Identity = 43/67 (64.18%), Postives = 51/67 (76.12%), Query Frame = 1
Query:   34 WTRYAFMFPVGILVATCAQTAGIGGAALTAPVFLLGFPLLGPDYPLHSVAASVATAILCEAFGFSSG 234
            WT+YAFMFPV + VAT A   GIGGAAL +P+FLLGFP+LGP YPL S A +   A+L E FGF+SG
Sbjct:   15 WTKYAFMFPVSVCVATTAMLTGIGGAALFSPIFLLGFPMLGPGYPLDSAAEAFNVALLTECFGFTSG 81          
BLAST of mRNA_Ecto-sp8_S_contig93842.30875.1 vs. uniprot
Match: A0A2E7PHJ1_9PROT (Probable membrane transporter protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7PHJ1_9PROT)

HSP 1 Score: 93.2 bits (230), Expect = 6.880e-21
Identity = 46/78 (58.97%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    1 DPASALAANPEWTRYAFMFPVGILVATCAQTAGIGGAALTAPVFLLGFPLLGPDYPLHSVAASVATAILCEAFGFSSG 234
            DP   LA + +WTRY FMFPV + VAT A  +GIGGAAL AP+FL+ FP+LGPD+ L   AA++ TA++ E FGFSSG
Sbjct:   35 DPMEFLA-DLDWTRYWFMFPVSMGVATTAMLSGIGGAALFAPIFLIIFPILGPDFVLAGTAAAIGTALMTEVFGFSSG 111          
BLAST of mRNA_Ecto-sp8_S_contig93842.30875.1 vs. uniprot
Match: A0A8J2SPG8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SPG8_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 9.420e-21
Identity = 47/77 (61.04%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    4 PASALAANPEWTRYAFMFPVGILVATCAQTAGIGGAALTAPVFLLGFPLLGPDYPLHSVAASVATAILCEAFGFSSG 234
            PA+A+A       Y+FM P    VATC Q  GIGGAAL +P+FLL FPLLGPDYPL S AA+VA+A+L E FGF+SG
Sbjct:   31 PAAAVA------DYSFMLPASTAVATCCQLCGIGGAALFSPIFLLVFPLLGPDYPLDSAAAAVASALLTETFGFASG 101          
BLAST of mRNA_Ecto-sp8_S_contig93842.30875.1 vs. uniprot
Match: A0A7S3EWJ0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EWJ0_9EUKA)

HSP 1 Score: 87.0 bits (214), Expect = 1.250e-20
Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = 1
Query:   10 SALAANPEWTRYAFMFPVGILVATCAQTAGIGGAALTAPVFLLGFPLLGPDYPLHSVAASVATAILCEAFGFSSG 234
            S L    +  RYAFM P    VAT  Q  G+GGAAL +P+FLL FPL+GP+YPL S A ++A+A+L E FGF+SG
Sbjct:   14 SMLPLPGDGMRYAFMLPTATAVATACQLCGVGGAALFSPIFLLVFPLMGPEYPLDSAAEAIASALLTEVFGFASG 88          
BLAST of mRNA_Ecto-sp8_S_contig93842.30875.1 vs. uniprot
Match: A0A1Z8P4T6_9PROT (Probable membrane transporter protein n=1 Tax=Rhodospirillaceae bacterium TMED23 TaxID=1986864 RepID=A0A1Z8P4T6_9PROT)

HSP 1 Score: 91.7 bits (226), Expect = 1.510e-20
Identity = 40/68 (58.82%), Postives = 53/68 (77.94%), Query Frame = 1
Query:   31 EWTRYAFMFPVGILVATCAQTAGIGGAALTAPVFLLGFPLLGPDYPLHSVAASVATAILCEAFGFSSG 234
            +WT Y FMFPV + VAT A  +GIGGAA+ AP+F++ FPLLGP+YP  ++AA++  A+L E FGFSSG
Sbjct:    7 DWTIYWFMFPVAMCVATVAMLSGIGGAAMFAPIFMIIFPLLGPEYPFQNIAAAIGVALLTEVFGFSSG 74          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig93842.30875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHM5_9PHAE1.450e-47100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FW33_ECTSI7.340e-46100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2E7FAG1_9PROT5.880e-2264.71Probable membrane transporter protein n=2 Tax=uncl... [more]
A0A7S3ZRX1_9STRA1.240e-2161.04Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A2S6TM75_9PROT1.540e-2161.76Probable membrane transporter protein n=5 Tax=Alph... [more]
C1EBA3_MICCC1.660e-2164.184-toluene sulfonate uptake permease n=1 Tax=Microm... [more]
A0A2E7PHJ1_9PROT6.880e-2158.97Probable membrane transporter protein n=1 Tax=Rhod... [more]
A0A8J2SPG8_9STRA9.420e-2161.04Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3EWJ0_9EUKA1.250e-2054.67Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A1Z8P4T6_9PROT1.510e-2058.82Probable membrane transporter protein n=1 Tax=Rhod... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig93842contigEcto-sp8_S_contig93842:146..379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score162.2
Seed ortholog evalue1e-37
Seed eggNOG ortholog2880.D7FW33
Model size234
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Sulfite exporter TauE/SafE
EggNOG OGs2CY1Q@1,2S1CE@2759
Cds size234
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145294.335554-CDS-Ecto-sp8_S_contig93842:145..3791681145294.335554-CDS-Ecto-sp8_S_contig93842:145..379Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig93842 146..379 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig93842.30875.1prot_Ecto-sp8_S_contig93842.30875.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig93842 146..379 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig93842.30875.1

>prot_Ecto-sp8_S_contig93842.30875.1 ID=prot_Ecto-sp8_S_contig93842.30875.1|Name=mRNA_Ecto-sp8_S_contig93842.30875.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=78bp
DPASALAANPEWTRYAFMFPVGILVATCAQTAGIGGAALTAPVFLLGFPL
LGPDYPLHSVAASVATAILCEAFGFSSG
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mRNA from alignment at Ecto-sp8_S_contig93842:146..379-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig93842.30875.1 ID=mRNA_Ecto-sp8_S_contig93842.30875.1|Name=mRNA_Ecto-sp8_S_contig93842.30875.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=234bp|location=Sequence derived from alignment at Ecto-sp8_S_contig93842:146..379- (Ectocarpus species8 EcLAC_412)
GATCCGGCAAGCGCTCTCGCTGCCAACCCGGAGTGGACGCGGTACGCTTT CATGTTTCCGGTGGGCATCTTGGTTGCGACGTGCGCCCAAACGGCCGGGA TCGGTGGCGCAGCTCTCACGGCCCCGGTGTTTCTATTGGGGTTCCCGCTT TTGGGCCCAGATTATCCCCTGCACTCGGTGGCGGCAAGCGTGGCGACCGC GATACTGTGTGAAGCGTTCGGGTTTTCGTCAGGT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig93842:146..379-

>mRNA_Ecto-sp8_S_contig93842.30875.1 ID=mRNA_Ecto-sp8_S_contig93842.30875.1|Name=mRNA_Ecto-sp8_S_contig93842.30875.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp8_S_contig93842:146..379- (Ectocarpus species8 EcLAC_412)
GATCCGGCAAGCGCTCTCGCTGCCAACCCGGAGTGGACGCGGTACGCTTT
CATGTTTCCGGTGGGCATCTTGGTTGCGACGTGCGCCCAAACGGCCGGGA
TCGGTGGCGCAGCTCTCACGGCCCCGGTGTTTCTATTGGGGTTCCCGCTT
TTGGGCCCAGATTATCCCCTGCACTCGGTGGCGGCAAGCGTGGCGACCGC
GATACTGTGTGAAGCGTTCGGGTTTTCGTCAGGT
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