mRNA_Ecto-sp8_S_contig93830.30871.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig93830.30871.1
Unique NamemRNA_Ecto-sp8_S_contig93830.30871.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig93830.30871.1 vs. uniprot
Match: D7FQR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQR2_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 6.980e-39
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 1 
Query:    1 RVLEREAELVGRIQARWRGLSVRRYLVVFRRELRRHREVRASMVFRLQRTVRGWSHRKRFSKLKSQKAEQNILADYL 231
            RVLEREAELVGRIQARWRGLSVRRYLVVFRRELRRHREVRASMVFRLQRTVRGWSHRKRFSKLKSQKAEQNIL DYL
Sbjct:  324 RVLEREAELVGRIQARWRGLSVRRYLVVFRRELRRHREVRASMVFRLQRTVRGWSHRKRFSKLKSQKAEQNILGDYL 400
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BLAST of mRNA_Ecto-sp8_S_contig93830.30871.1 vs. uniprot
Match: A0A836CFY4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFY4_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 4.950e-9
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 RVLEREAELVGRIQARWRGLSVRRYLVVFRRELRRHREVRASMVFRLQRTVRGWSHRK 174
            R LER + L  R+Q RWRG++ R  + V+ RE RR RE+R ++VFR+QRT RGW+ RK
Sbjct:  367 RALERVSALATRVQRRWRGVAARLRMAVYLRERRRLRELRNAVVFRIQRTYRGWAGRK 424
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BLAST of mRNA_Ecto-sp8_S_contig93830.30871.1 vs. uniprot
Match: A0A7S2R5D9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5D9_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.230e-5
Identity = 26/58 (44.83%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    1 RVLEREAELVGRIQARWRGLSVRRYLVVFRRELRRHREVRASMVFRLQRTVRGWSHRK 174
            R+  REA L   +Q RWRG++VRR++VV+ RE+ R RE++ +  F++QR V G+  R+
Sbjct:  342 RIRIREAFLTTLVQKRWRGITVRRFMVVYMREVFRIRELQCAAAFKIQRLVHGFRGRR 399
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BLAST of mRNA_Ecto-sp8_S_contig93830.30871.1 vs. uniprot
Match: A0A7S1U287_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U287_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.970e-5
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:   19 AELVGRIQARWRGLSVRRYLVVFRRELRRHREVRASMVFRLQRTVRG 159
            A    R+QARWRGL+VR++L +FRRE  R RE R++ V ++QR  RG
Sbjct:  112 AAYATRVQARWRGLTVRKFLKIFRRECVRLREFRSACVMKIQRCYRG 158
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BLAST of mRNA_Ecto-sp8_S_contig93830.30871.1 vs. uniprot
Match: A0A7S1U265_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U265_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 3.070e-5
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:   19 AELVGRIQARWRGLSVRRYLVVFRRELRRHREVRASMVFRLQRTVRG 159
            A    R+QARWRGL+VR++L +FRRE  R RE R++ V ++QR  RG
Sbjct:  112 AAYATRVQARWRGLTVRKFLKIFRRECVRLREFRSACVMKIQRCYRG 158
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig93830.30871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FQR2_ECTSI6.980e-3998.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CFY4_9STRA4.950e-953.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2R5D9_9STRA1.230e-544.83Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1U287_9STRA2.970e-553.19Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S1U265_9STRA3.070e-553.19Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig93830contigEcto-sp8_S_contig93830:327..557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score145.6
Seed ortholog evalue9.6e-33
Seed eggNOG ortholog2880.D7FQR2
Model size231
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Short calmodulin-binding motif containing conserved Ile and Gln residues.
EggNOG OGs2A3HT@1,2RY5B@2759
Cds size231
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145294.1284735-CDS-Ecto-sp8_S_contig93830:326..5571681145294.1284735-CDS-Ecto-sp8_S_contig93830:326..557Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig93830 327..557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig93830.30871.1prot_Ecto-sp8_S_contig93830.30871.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig93830 327..557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig93830.30871.1

>prot_Ecto-sp8_S_contig93830.30871.1 ID=prot_Ecto-sp8_S_contig93830.30871.1|Name=mRNA_Ecto-sp8_S_contig93830.30871.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=77bp
RVLEREAELVGRIQARWRGLSVRRYLVVFRRELRRHREVRASMVFRLQRT
VRGWSHRKRFSKLKSQKAEQNILADYL
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mRNA from alignment at Ecto-sp8_S_contig93830:327..557-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig93830.30871.1 ID=mRNA_Ecto-sp8_S_contig93830.30871.1|Name=mRNA_Ecto-sp8_S_contig93830.30871.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=231bp|location=Sequence derived from alignment at Ecto-sp8_S_contig93830:327..557- (Ectocarpus species8 EcLAC_412)
AGAGTGCTAGAGAGAGAAGCCGAGCTGGTGGGGCGCATCCAGGCGCGGTG
GAGGGGACTCAGCGTTCGGCGCTACTTGGTCGTGTTCCGTAGGGAGCTGA
GGAGACATCGAGAGGTGCGCGCGAGTATGGTCTTCCGTCTTCAGCGAACC
GTAAGAGGTTGGTCTCACCGCAAGCGCTTTTCCAAGCTCAAGTCCCAAAA
AGCAGAGCAGAACATACTGGCGGACTATCTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig93830:327..557-

>mRNA_Ecto-sp8_S_contig93830.30871.1 ID=mRNA_Ecto-sp8_S_contig93830.30871.1|Name=mRNA_Ecto-sp8_S_contig93830.30871.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp8_S_contig93830:327..557- (Ectocarpus species8 EcLAC_412)
AGAGTGCTAGAGAGAGAAGCCGAGCTGGTGGGGCGCATCCAGGCGCGGTG
GAGGGGACTCAGCGTTCGGCGCTACTTGGTCGTGTTCCGTAGGGAGCTGA
GGAGACATCGAGAGGTGCGCGCGAGTATGGTCTTCCGTCTTCAGCGAACC
GTAAGAGGTTGGTCTCACCGCAAGCGCTTTTCCAAGCTCAAGTCCCAAAA
AGCAGAGCAGAACATACTGGCGGACTATCTG
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