mRNA_Ecto-sp8_S_contig9379.30864.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp8_S_contig9379.30864.1
Unique Name	mRNA_Ecto-sp8_S_contig9379.30864.1
Type	mRNA
Organism	Ectocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)

Homology

[Close]

BLAST of mRNA_Ecto-sp8_S_contig9379.30864.1 vs. uniprot
Match: A0A6H5J9V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9V8_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.000e-33
Identity = 66/90 (73.33%), Postives = 76/90 (84.44%), Query Frame = 3

Query:   78 NLLKYLQVPAVNQYEEAYDDLYLELKQTGGLNCLRSIVPVRSTAVLQPKVLDLQDCGEDEQLEKQLNFHLPDAELARPRLDELVMSVADD 347
            NLLKYLQ+  V Q++ AYDD+Y EL QTGGL+CLRSI PVRST V QPKVLDLQDCG+D+QLEKQL F+L DAELA+  LDELVM+VA D
Sbjct:   34 NLLKYLQIQTVLQFQAAYDDMYYELHQTGGLDCLRSIAPVRSTGVFQPKVLDLQDCGQDDQLEKQLEFYLADAELAKACLDELVMNVAHD 123

[Close]

BLAST of mRNA_Ecto-sp8_S_contig9379.30864.1 vs. uniprot
Match: D7G1L3_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L3_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 1.940e-31
Identity = 64/90 (71.11%), Postives = 72/90 (80.00%), Query Frame = 3

Query:   78 NLLKYLQVPAVNQYEEAYDDLYLELKQTGGLNCLRSIVPVRSTAVLQPKVLDLQDCGEDEQLEKQLNFHLPDAELARPRLDELVMSVADD 347
            NLLKYLQV  V Q++ AYDDLY EL +TGGL+CLR+I PV ST V QPKV D QDCGEDEQLE QL F+L DAELA+  LDELVM+VA D
Sbjct:   34 NLLKYLQVQTVLQFQAAYDDLYYELSKTGGLDCLRTIAPVPSTGVFQPKVFDPQDCGEDEQLENQLQFYLADAELAKAHLDELVMNVAHD 123

[Close]

BLAST of mRNA_Ecto-sp8_S_contig9379.30864.1 vs. uniprot
Match: A0A6H5K147_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K147_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 5.190e-31
Identity = 60/90 (66.67%), Postives = 74/90 (82.22%), Query Frame = 3

Query:   78 NLLKYLQVPAVNQYEEAYDDLYLELKQTGGLNCLRSIVPVRSTAVLQPKVLDLQDCGEDEQLEKQLNFHLPDAELARPRLDELVMSVADD 347
            N+LKYLQ+ AV +++EAYDDLY EL + GGL CLRSIVP+R   VLQPKVL+LQDC EDE+LEK+L+F+L DAEL +P LDELV  +A D
Sbjct:  130 NILKYLQIKAVTRFQEAYDDLYYELNKKGGLECLRSIVPIRWKEVLQPKVLELQDCDEDEELEKKLDFYLADAELTKPHLDELVSKIAHD 219

[Close]

BLAST of mRNA_Ecto-sp8_S_contig9379.30864.1 vs. uniprot
Match: D7FH93_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH93_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 3.160e-29
Identity = 61/90 (67.78%), Postives = 69/90 (76.67%), Query Frame = 3

Query:   78 NLLKYLQVPAVNQYEEAYDDLYLELKQTGGLNCLRSIVPVRSTAVLQPKVLDLQDCGEDEQLEKQLNFHLPDAELARPRLDELVMSVADD 347
            N+LKYLQV  V +++  YD LY EL +TGGL CLR I  VRST +LQPKVL LQDC EDEQLEKQL F+L DAELA+P LDELV  VA D
Sbjct:   33 NILKYLQVQTVLRFQGQYDGLYYELNKTGGLECLRGIAAVRSTELLQPKVLGLQDCSEDEQLEKQLQFYLADAELAKPNLDELVTKVAHD 122

[Close]

BLAST of mRNA_Ecto-sp8_S_contig9379.30864.1 vs. uniprot
Match: A0A6H5JX27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX27_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.070e-27
Identity = 56/87 (64.37%), Postives = 66/87 (75.86%), Query Frame = 3

Query:   78 NLLKYLQVPAVNQYEEAYDDLYLELKQTGGLNCLRSIVPVRSTAVLQPKVLDLQDCGEDEQLEKQLNFHLPDAELARPRLDELVMSV 338
            N+LKYLQV AV Q++  YDDL+ EL +T GL CLRSI PV S  + QPKVLD +DCGEDEQL +QL F+L DAELA+P LDEL   V
Sbjct:   33 NVLKYLQVQAVKQFQADYDDLHYELNKTEGLECLRSIDPVPSKELFQPKVLDQKDCGEDEQLYEQLQFYLTDAELAKPHLDELCADV 119

[Close]

BLAST of mRNA_Ecto-sp8_S_contig9379.30864.1 vs. uniprot
Match: A0A6H5KSC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSC7_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 3.500e-27
Identity = 57/90 (63.33%), Postives = 67/90 (74.44%), Query Frame = 3

Query:   78 NLLKYLQVPAVNQYEEAYDDLYLELKQTGGLNCLRSIVPVRSTAVLQPKVLDLQDCGEDEQLEKQLNFHLPDAELARPRLDELVMSVADD 347
            N+LK LQV  V Q++ AYDDLY EL + GGL CLRSI P RST ++QPKVLD Q+C E  QLE QL F+L DAELA+P LDEL+  VA D
Sbjct:   33 NILKCLQVQTVVQFQLAYDDLYYELNKEGGLECLRSIAPARSTGIVQPKVLDPQNCDEGGQLENQLQFYLADAELAKPHLDELITKVAHD 122

[Close]

BLAST of mRNA_Ecto-sp8_S_contig9379.30864.1 vs. uniprot
Match: A0A6H5JHK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK0_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.810e-26
Identity = 56/88 (63.64%), Postives = 65/88 (73.86%), Query Frame = 3

Query:   78 NLLKYLQVPAVNQYEEAYDDLYLELKQTGGLNCLRSIVPVRSTAVLQPKVLDLQDCGEDEQLEKQLNFHLPDAELARPRLDELVMSVA 341
            NLLK+LQ+ AV QYEEAYD LY EL + GGL CLR I P R   +LQPKVL+LQDC ED +   QL F+L DAELA+ RLDELV  +A
Sbjct:   33 NLLKFLQIRAVLQYEEAYDRLYYELNKHGGLECLREIAPARLKDLLQPKVLELQDCNEDVRFAAQLEFYLADAELAKNRLDELVADIA 120

[Close]

BLAST of mRNA_Ecto-sp8_S_contig9379.30864.1 vs. uniprot
Match: D7FTB3_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTB3_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.460e-24
Identity = 55/90 (61.11%), Postives = 66/90 (73.33%), Query Frame = 3

Query:   78 NLLKYLQVPAVNQYEEAYDDLYLELKQTGGLNCLRSIVPVRSTAVLQPKVLDLQDCGEDEQLEKQLNFHLPDAELARPRLDELVMSVADD 347
            NLLKY+QV  V  +EEAYDDL+ EL + GGL CLRSI P RS    QPK+ +LQDC E ++LE+QL F+L DA LA+P LD LV SVA D
Sbjct:   77 NLLKYVQVNTVLGFEEAYDDLFYELNENGGLECLRSIAPARSKDRFQPKISELQDCDEGDRLEQQLQFYLTDAGLAKPFLDVLVASVAQD 166

[Close]

BLAST of mRNA_Ecto-sp8_S_contig9379.30864.1 vs. uniprot
Match: A0A6H5KHN5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN5_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.560e-24
Identity = 54/90 (60.00%), Postives = 66/90 (73.33%), Query Frame = 3

Query:   78 NLLKYLQVPAVNQYEEAYDDLYLELKQTGGLNCLRSIVPVRSTAVLQPKVLDLQDCGEDEQLEKQLNFHLPDAELARPRLDELVMSVADD 347
            NLLK+LQ+ AV Q+E AYD LY EL + GGL CLR I P R   +LQPKVL+LQDC ED +   QL F+L DA+LA+ RLDELV+ +A D
Sbjct: 1460 NLLKFLQIKAVLQFERAYDHLYYELNKHGGLKCLREITPARPKDLLQPKVLELQDCHEDVRFAAQLEFYLADAKLAKNRLDELVVDIAKD 1549

[Close]

BLAST of mRNA_Ecto-sp8_S_contig9379.30864.1 vs. uniprot
Match: D7FXH0_ECTSI (Tetratricopeptide repeat containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH0_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 2.030e-24
Identity = 54/89 (60.67%), Postives = 65/89 (73.03%), Query Frame = 3

Query:   78 NLLKYLQVPAVNQYEEAYDDLYLELKQTGGLNCLRSIVPVRSTAVLQPKVLDLQDCGEDEQLEKQLNFHLPDAELARPRLDELVMSVAD 344
            NLLK+LQ+ AV Q+EEAYD LY EL + GGL CLR I P R   +LQPKVL+LQDC E  +   QL F+L DAELA+ RLDELV  +A+
Sbjct:   33 NLLKFLQIRAVLQFEEAYDQLYYELNKHGGLECLREIAPARPKDLLQPKVLELQDCNEGVRFAAQLEFYLADAELAKNRLDELVADIAE 121

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp8_S_contig9379.30864.1 vs. uniprot

BLAST of mRNA_Ecto-sp8_S_contig9379.30864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18


Match Name	E-value	Identity	Description
A0A6H5J9V8_9PHAE	1.000e-33	73.33	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G1L3_ECTSI	1.940e-31	71.11	Kinesin light chain-like protein n=1 Tax=Ectocarpu...	[more]
A0A6H5K147_9PHAE	5.190e-31	66.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FH93_ECTSI	3.160e-29	67.78	Kinesin light chain-like protein n=1 Tax=Ectocarpu...	[more]
A0A6H5JX27_9PHAE	1.070e-27	64.37	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KSC7_9PHAE	3.500e-27	63.33	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JHK0_9PHAE	1.810e-26	63.64	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FTB3_ECTSI	1.460e-24	61.11	Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ect...	[more]
A0A6H5KHN5_9PHAE	1.560e-24	60.00	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
D7FXH0_ECTSI	2.030e-24	60.67	Tetratricopeptide repeat containing protein n=1 Ta...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp8_S_contig9379	contig	Ecto-sp8_S_contig9379:1640..2122 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species8 EcLAC_412 OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	1
Seed ortholog score	63.2
Seed ortholog evalue	3.8e-08
Seed eggNOG ortholog	2880.D7FH93
Model size	485
KEGG ko	ko:K10407
KEGG Pathway	ko05132,map05132
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
EggNOG free text desc.	determination of stomach left/right asymmetry
EggNOG OGs	COG0457@1,KOG1840@2759
Cds size	141
COG Functional cat.	C
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03019,ko04812

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681145293.5645878-UTR-Ecto-sp8_S_contig9379:1639..1981	1681145293.5645878-UTR-Ecto-sp8_S_contig9379:1639..1981	Ectocarpus species8 EcLAC_412	UTR	Ecto-sp8_S_contig9379 1640..1981 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681145293.583607-CDS-Ecto-sp8_S_contig9379:1981..2122	1681145293.583607-CDS-Ecto-sp8_S_contig9379:1981..2122	Ectocarpus species8 EcLAC_412	CDS	Ecto-sp8_S_contig9379 1982..2122 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp8_S_contig9379.30864.1	prot_Ecto-sp8_S_contig9379.30864.1	Ectocarpus species8 EcLAC_412	polypeptide	Ecto-sp8_S_contig9379 1982..2122 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp8_S_contig9379:1640..2122+
coding sequence from alignment at Ecto-sp8_S_contig9379:1640..2122+

protein sequence of mRNA_Ecto-sp8_S_contig9379.30864.1

>prot_Ecto-sp8_S_contig9379.30864.1 ID=prot_Ecto-sp8_S_contig9379.30864.1|Name=mRNA_Ecto-sp8_S_contig9379.30864.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=47bp
MTSKYEVKRVKVKSPESTRRKAREHDRDFQKVADMARVTVICTAPEA

mRNA from alignment at Ecto-sp8_S_contig9379:1640..2122+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp8_S_contig9379.30864.1 ID=mRNA_Ecto-sp8_S_contig9379.30864.1|Name=mRNA_Ecto-sp8_S_contig9379.30864.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=483bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9379:1640..2122+ (Ectocarpus species8 EcLAC_412)
CAGATGGCCACCGTCGAGATCAACGAGCTTATTCGTCTGAAGGCCGAGCT
GAAGACCTCTAGTCTAGACCCCAAGGTAATCTCCTCAAGTACCTTCAAGT
CCCTGCAGTAAACCAGTATGAAGAAGCGTACGACGATTTGTATTTGGAGC
TCAAGCAGACGGGAGGGCTGAATTGCCTTCGCAGCATCGTCCCGGTTCGG
TCGACGGCCGTCTTACAGCCCAAGGTCTTGGATCTACAGGACTGCGGTGA
GGACGAGCAGCTTGAGAAACAGCTAAATTTCCATCTTCCGGACGCTGAGC
TTGCAAGGCCGCGTTTGGACGAGCTCGTCATGAGCGTTGCGGATGACTAG
CAAATACGAGGTTAAACGCGTGAAGGTCAAGTCACCGGAAAGCACGCGAC
GGAAGGCCAGAGAGCATGATCGGGACTTCCAAAAGGTTGCTGACATGGCT
CGAGTGACTGTGATCTGCACCGCACCGGAGGCC

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9379:1640..2122+

>mRNA_Ecto-sp8_S_contig9379.30864.1 ID=mRNA_Ecto-sp8_S_contig9379.30864.1|Name=mRNA_Ecto-sp8_S_contig9379.30864.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9379:1640..2122+ (Ectocarpus species8 EcLAC_412)
ATGACTAGCAAATACGAGGTTAAACGCGTGAAGGTCAAGTCACCGGAAAG
CACGCGACGGAAGGCCAGAGAGCATGATCGGGACTTCCAAAAGGTTGCTG
ACATGGCTCGAGTGACTGTGATCTGCACCGCACCGGAGGCC