mRNA_Ecto-sp8_S_contig93755.30860.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig93755.30860.1
Unique NamemRNA_Ecto-sp8_S_contig93755.30860.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig93755.30860.1 vs. uniprot
Match: D7FQB4_ECTSI (U-box domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQB4_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 7.340e-23
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:   19 QVTKERDTVRAIQDASNYPLSIIMVGVGEGPWETCREFDNRLPGR 153
            QVTKERDTVRAIQDASNYPLSIIMVGVGEGPWETCREFDNRLPGR
Sbjct:  228 QVTKERDTVRAIQDASNYPLSIIMVGVGEGPWETCREFDNRLPGR 272
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BLAST of mRNA_Ecto-sp8_S_contig93755.30860.1 vs. uniprot
Match: A0A6A4Y445_9STRA (Copine domain-containing protein (Fragment) n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4Y445_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.920e-14
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   19 QVTKERDTVRAIQDASNYPLSIIMVGVGEGPWETCREFDNRLPGR 153
            QVT ER+T  AI +ASNYP+SIIMVGVG+GPWE   EFD+RLP R
Sbjct:   50 QVTSERETQDAIVEASNYPISIIMVGVGDGPWEMMEEFDDRLPRR 94
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BLAST of mRNA_Ecto-sp8_S_contig93755.30860.1 vs. uniprot
Match: V4AQ50_LOTGI (VWFA domain-containing protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4AQ50_LOTGI)

HSP 1 Score: 72.4 bits (176), Expect = 5.340e-14
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:   19 QVTKERDTVRAIQDASNYPLSIIMVGVGEGPWETCREFDNRLPGR 153
            QVT ER+T  AI +ASNYPLSIIMVGVG+GPW+T  E+DN+LP R
Sbjct:  169 QVTSERETTEAIVNASNYPLSIIMVGVGDGPWDTMDEYDNKLPTR 213
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BLAST of mRNA_Ecto-sp8_S_contig93755.30860.1 vs. uniprot
Match: UPI001B888A19 (E3 ubiquitin-protein ligase RGLG4-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B888A19)

HSP 1 Score: 73.2 bits (178), Expect = 5.760e-14
Identity = 30/45 (66.67%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:   19 QVTKERDTVRAIQDASNYPLSIIMVGVGEGPWETCREFDNRLPGR 153
            QVT ER+T+ +I++ASNYP+SIIMVGVG+GPW+T  EFD +LP R
Sbjct:  258 QVTSERETIESIEEASNYPMSIIMVGVGDGPWDTMDEFDQKLPSR 302
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BLAST of mRNA_Ecto-sp8_S_contig93755.30860.1 vs. uniprot
Match: A0A6A4YDI6_9STRA (VWFA domain-containing protein (Fragment) n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4YDI6_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.760e-13
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   19 QVTKERDTVRAIQDASNYPLSIIMVGVGEGPWETCREFDNRLPGR 153
            QVT ER+T  AI +ASNYP+SIIMVGVG+GPWE   EFD+RLP R
Sbjct:  179 QVTSERETQDAIVEASNYPISIIMVGVGDGPWEMMEEFDDRLPRR 223
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BLAST of mRNA_Ecto-sp8_S_contig93755.30860.1 vs. uniprot
Match: F2UFI4_SALR5 (Copine n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UFI4_SALR5)

HSP 1 Score: 70.9 bits (172), Expect = 3.310e-13
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    4 FGVLL-----QVTKERDTVRAIQDASNYPLSIIMVGVGEGPWETCREFDNRLPGR 153
            F VLL     QVT  +DT+ AI +ASNYPLSI+M+GVG+GPW+  +EFD+RLP R
Sbjct:  216 FHVLLIIADGQVTTPKDTIAAIVEASNYPLSIVMIGVGDGPWDMMKEFDDRLPER 270
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BLAST of mRNA_Ecto-sp8_S_contig93755.30860.1 vs. uniprot
Match: A0A8B6BPS0_MYTGA (VWFA domain-containing protein n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6BPS0_MYTGA)

HSP 1 Score: 70.9 bits (172), Expect = 3.400e-13
Identity = 30/45 (66.67%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:   19 QVTKERDTVRAIQDASNYPLSIIMVGVGEGPWETCREFDNRLPGR 153
            QVT ER+T+ AI +AS +PLSI+MVGVG+GPWET  EFD+R+P R
Sbjct:  228 QVTNERETIDAIVEASRWPLSIVMVGVGDGPWETMEEFDDRIPAR 272
[Close]
BLAST of mRNA_Ecto-sp8_S_contig93755.30860.1 vs. uniprot
Match: A0A2T7PTD0_POMCA (VWFA domain-containing protein n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PTD0_POMCA)

HSP 1 Score: 70.5 bits (171), Expect = 4.610e-13
Identity = 31/45 (68.89%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:   19 QVTKERDTVRAIQDASNYPLSIIMVGVGEGPWETCREFDNRLPGR 153
            QVT ERDT  AI +ASN+PLSIIMVGVG+GPW+T ++FD +LP R
Sbjct:  223 QVTAERDTTDAIVEASNWPLSIIMVGVGDGPWDTMKDFDEKLPKR 267
[Close]
BLAST of mRNA_Ecto-sp8_S_contig93755.30860.1 vs. uniprot
Match: A0A8B6BPR3_MYTGA (Copine domain-containing protein n=2 Tax=Mytilus TaxID=6548 RepID=A0A8B6BPR3_MYTGA)

HSP 1 Score: 70.9 bits (172), Expect = 4.660e-13
Identity = 30/45 (66.67%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:   19 QVTKERDTVRAIQDASNYPLSIIMVGVGEGPWETCREFDNRLPGR 153
            QVT ER+T+ AI +AS +PLSI+MVGVG+GPWET  EFD+R+P R
Sbjct:  319 QVTNERETIDAIVEASRWPLSIVMVGVGDGPWETMEEFDDRIPAR 363
[Close]
BLAST of mRNA_Ecto-sp8_S_contig93755.30860.1 vs. uniprot
Match: W4GXY1_9STRA (VWFA domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GXY1_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 6.520e-13
Identity = 30/45 (66.67%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:   19 QVTKERDTVRAIQDASNYPLSIIMVGVGEGPWETCREFDNRLPGR 153
            QVT ER+T+ AI  ASN+PLSIIMVGVG+GPW+T  +FD++LP R
Sbjct:  186 QVTSERETIEAIVAASNFPLSIIMVGVGDGPWDTMEKFDDQLPSR 230
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig93755.30860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQB4_ECTSI7.340e-23100.00U-box domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6A4Y445_9STRA3.920e-1471.11Copine domain-containing protein (Fragment) n=2 Ta... [more]
V4AQ50_LOTGI5.340e-1471.11VWFA domain-containing protein n=1 Tax=Lottia giga... [more]
UPI001B888A195.760e-1466.67E3 ubiquitin-protein ligase RGLG4-like n=1 Tax=Gig... [more]
A0A6A4YDI6_9STRA2.760e-1371.11VWFA domain-containing protein (Fragment) n=2 Tax=... [more]
F2UFI4_SALR53.310e-1360.00Copine n=1 Tax=Salpingoeca rosetta (strain ATCC 50... [more]
A0A8B6BPS0_MYTGA3.400e-1366.67VWFA domain-containing protein n=2 Tax=Mytilus gal... [more]
A0A2T7PTD0_POMCA4.610e-1368.89VWFA domain-containing protein n=1 Tax=Pomacea can... [more]
A0A8B6BPR3_MYTGA4.660e-1366.67Copine domain-containing protein n=2 Tax=Mytilus T... [more]
W4GXY1_9STRA6.520e-1366.67VWFA domain-containing protein n=1 Tax=Aphanomyces... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig93755contigEcto-sp8_S_contig93755:368..520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score97.4
Seed ortholog evalue2e-18
Seed eggNOG ortholog2880.D7FQB4
Model size153
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.negative regulation of response to water deprivation
EggNOG OGsKOG1327@1,KOG1327@2759
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-01_006740.1
Cds size153
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145293.2198815-CDS-Ecto-sp8_S_contig93755:367..5201681145293.2198815-CDS-Ecto-sp8_S_contig93755:367..520Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig93755 368..520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig93755.30860.1prot_Ecto-sp8_S_contig93755.30860.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig93755 368..520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig93755.30860.1

>prot_Ecto-sp8_S_contig93755.30860.1 ID=prot_Ecto-sp8_S_contig93755.30860.1|Name=mRNA_Ecto-sp8_S_contig93755.30860.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=51bp
MFGVLLQVTKERDTVRAIQDASNYPLSIIMVGVGEGPWETCREFDNRLPG
R
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mRNA from alignment at Ecto-sp8_S_contig93755:368..520-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig93755.30860.1 ID=mRNA_Ecto-sp8_S_contig93755.30860.1|Name=mRNA_Ecto-sp8_S_contig93755.30860.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp8_S_contig93755:368..520- (Ectocarpus species8 EcLAC_412)
ATGTTTGGCGTACTACTACAGGTGACGAAAGAGCGCGACACTGTCAGAGC
GATCCAGGACGCCTCCAACTACCCCCTGAGCATCATCATGGTCGGGGTCG
GGGAGGGCCCGTGGGAAACGTGCCGAGAGTTCGACAACCGACTTCCCGGC
AGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig93755:368..520-

>mRNA_Ecto-sp8_S_contig93755.30860.1 ID=mRNA_Ecto-sp8_S_contig93755.30860.1|Name=mRNA_Ecto-sp8_S_contig93755.30860.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp8_S_contig93755:368..520- (Ectocarpus species8 EcLAC_412)
ATGTTTGGCGTACTACTACAGGTGACGAAAGAGCGCGACACTGTCAGAGC
GATCCAGGACGCCTCCAACTACCCCCTGAGCATCATCATGGTCGGGGTCG
GGGAGGGCCCGTGGGAAACGTGCCGAGAGTTCGACAACCGACTTCCCGGC
AGG
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