mRNA_Ecto-sp8_S_contig93754.30859.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig93754.30859.1
Unique NamemRNA_Ecto-sp8_S_contig93754.30859.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig93754.30859.1 vs. uniprot
Match: D7FNS8_ECTSI (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNS8_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 6.430e-17
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 NGVLKVVAIGGSVTFGRSCESPKGLTNNACAWPHRLD 111
            NGVLKVVAIGGSVTFGRSCESPKGL NNACAWPHRLD
Sbjct:  177 NGVLKVVAIGGSVTFGRSCESPKGLANNACAWPHRLD 213
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BLAST of mRNA_Ecto-sp8_S_contig93754.30859.1 vs. uniprot
Match: D7FNS9_ECTSI (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNS9_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.420e-14
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 NGVLKVVAIGGSVTFGRSCESPKGLTNNACAWPHRLD 111
            NGVLKVVAIGGSVTFGR+CESP GLT NACAWPHRL+
Sbjct:    3 NGVLKVVAIGGSVTFGRNCESPNGLTFNACAWPHRLE 39
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BLAST of mRNA_Ecto-sp8_S_contig93754.30859.1 vs. uniprot
Match: A0A6H5JFM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM8_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.230e-9
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    4 GVLKVVAIGGSVTFGRSCESPKGLTNNACAWPHRLD 111
            GVLKVV +GGSVT+G  C SP GL  N CAWPHR++
Sbjct:  146 GVLKVVVLGGSVTYGHDCSSPTGLKGNDCAWPHRVE 181
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BLAST of mRNA_Ecto-sp8_S_contig93754.30859.1 vs. uniprot
Match: D8LJK3_ECTSI (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK3_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.660e-9
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    4 GVLKVVAIGGSVTFGRSCESPKGLTNNACAWPHRLD 111
            GVLKVV +GGSVT+G  C SP GL  N CAWPHR++
Sbjct:   91 GVLKVVVLGGSVTYGHDCSSPAGLKGNGCAWPHRVE 126
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BLAST of mRNA_Ecto-sp8_S_contig93754.30859.1 vs. uniprot
Match: A0A6H5JTT5_9PHAE (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT5_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 3.100e-9
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    4 GVLKVVAIGGSVTFGRSCESPKGLTNNACAWPHRLD 111
            GVLKVV +GGSVTFG  C SP GL   ACAWPHR++
Sbjct:  119 GVLKVVVLGGSVTFGHECSSPAGLEGIACAWPHRVE 154
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig93754.30859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FNS8_ECTSI6.430e-1797.30SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
D7FNS9_ECTSI1.420e-1489.19SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5JFM8_9PHAE1.230e-966.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJK3_ECTSI1.660e-966.67SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5JTT5_9PHAE3.100e-969.44SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig93754contigEcto-sp8_S_contig93754:432..542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size111
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size111
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145293.1890275-CDS-Ecto-sp8_S_contig93754:431..5421681145293.1890275-CDS-Ecto-sp8_S_contig93754:431..542Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig93754 432..542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig93754.30859.1prot_Ecto-sp8_S_contig93754.30859.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig93754 432..542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig93754.30859.1

>prot_Ecto-sp8_S_contig93754.30859.1 ID=prot_Ecto-sp8_S_contig93754.30859.1|Name=mRNA_Ecto-sp8_S_contig93754.30859.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=37bp
NGVLKVVAIGGSVTFGRSCESPKGLTNNACAWPHRLD
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mRNA from alignment at Ecto-sp8_S_contig93754:432..542+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig93754.30859.1 ID=mRNA_Ecto-sp8_S_contig93754.30859.1|Name=mRNA_Ecto-sp8_S_contig93754.30859.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=111bp|location=Sequence derived from alignment at Ecto-sp8_S_contig93754:432..542+ (Ectocarpus species8 EcLAC_412)
AACGGGGTGCTGAAGGTTGTGGCGATCGGAGGGAGCGTAACGTTCGGTCG
TAGCTGCGAATCTCCCAAAGGTTTAACCAACAATGCCTGTGCATGGCCTC
ATCGTCTCGAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig93754:432..542+

>mRNA_Ecto-sp8_S_contig93754.30859.1 ID=mRNA_Ecto-sp8_S_contig93754.30859.1|Name=mRNA_Ecto-sp8_S_contig93754.30859.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=111bp|location=Sequence derived from alignment at Ecto-sp8_S_contig93754:432..542+ (Ectocarpus species8 EcLAC_412)
AACGGGGTGCTGAAGGTTGTGGCGATCGGAGGGAGCGTAACGTTCGGTCG
TAGCTGCGAATCTCCCAAAGGTTTAACCAACAATGCCTGTGCATGGCCTC
ATCGTCTCGAC
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