mRNA_Ecto-sp8_S_contig9372.30858.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9372.30858.1
Unique NamemRNA_Ecto-sp8_S_contig9372.30858.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9372.30858.1 vs. uniprot
Match: D7FP18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP18_ECTSI)

HSP 1 Score: 231 bits (588), Expect = 9.330e-76
Identity = 129/144 (89.58%), Postives = 135/144 (93.75%), Query Frame = 1 
Query:    1 KALARRNTLLLTTELVTTKEEYDMDKSTLLTKLVAAERATEEAESKLKAIVAADRQLRASKLELSSANKAMANAEAELRRKRNPIFSAAETVEFMQVNDHSRTGALHSTEYMTHEMCIIVNISNKMIGHIIEQLVEQFLPVRSP 432
            +ALARRNTLLLTTEL TT EEY+MD+STLLTKLVAAE+ATEEAESKLKAIVAADRQLRASKLELSSANKAMANAEAELR KRNPIFSAAETVEF QVNDHS T ALHST+YM HE+CIIVNI NKMIGHIIEQLVEQFLPVR P
Sbjct:    6 QALARRNTLLLTTELATTNEEYNMDRSTLLTKLVAAEKATEEAESKLKAIVAADRQLRASKLELSSANKAMANAEAELRGKRNPIFSAAETVEFTQVNDHSCTRALHSTKYMAHEICIIVNIFNKMIGHIIEQLVEQFLPVRFP 149
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9372.30858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP18_ECTSI9.330e-7689.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9372contigEcto-sp8_S_contig9372:6198..7257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size435
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_001750.1
Cds size435
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145293.1288826-CDS-Ecto-sp8_S_contig9372:6197..62841681145293.1288826-CDS-Ecto-sp8_S_contig9372:6197..6284Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9372 6198..6284 +
1681145293.1443386-CDS-Ecto-sp8_S_contig9372:6636..68371681145293.1443386-CDS-Ecto-sp8_S_contig9372:6636..6837Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9372 6637..6837 +
1681145293.1579077-CDS-Ecto-sp8_S_contig9372:7110..72571681145293.1579077-CDS-Ecto-sp8_S_contig9372:7110..7257Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9372 7111..7257 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9372.30858.1prot_Ecto-sp8_S_contig9372.30858.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9372 6198..7257 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9372.30858.1

>prot_Ecto-sp8_S_contig9372.30858.1 ID=prot_Ecto-sp8_S_contig9372.30858.1|Name=mRNA_Ecto-sp8_S_contig9372.30858.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=145bp
KALARRNTLLLTTELVTTKEEYDMDKSTLLTKLVAAERATEEAESKLKAI
VAADRQLRASKLELSSANKAMANAEAELRRKRNPIFSAAETVEFMQVNDH
SRTGALHSTEYMTHEMCIIVNISNKMIGHIIEQLVEQFLPVRSP*
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mRNA from alignment at Ecto-sp8_S_contig9372:6198..7257+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9372.30858.1 ID=mRNA_Ecto-sp8_S_contig9372.30858.1|Name=mRNA_Ecto-sp8_S_contig9372.30858.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1060bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9372:6198..7257+ (Ectocarpus species8 EcLAC_412)
AAGGCCTTGGCAAGGAGAAACACCCTTCTGCTGACCACTGAATTAGTGAC
TACCAAGGAAGAATACGACATGGACAAATCGACCTTGGTGAGTCAACAAC
ATGACGACGTATTTTCGCCGTCAATGAATATAATGCAGCAGACCCGGACT
CGACAATGCAGCGAATCACAAGGAGCCTCTCCACGCCATGGAGAATAGAT
GTTCGTCGAATAGGAATTCACCACCAGTGGTCGCGTGCAAAGATTCTCAC
CAGCCTTGGGAGTCCCCCTCCGCCAACAGTCTAGAATGAACACAAGCACA
ACGTCGGTGACAGTTTGATGTTGGAGACTAGAGTAAACACAAGGACAACG
TTGGGGATAGTTTGCTGTTGGAATTGCAATTCCTTCACACAACTTCACCC
CGACAATCCCCGAATCGTTTTCCATCGTTTTTCTTCTAGCTGACGAAGCT
CGTTGCGGCGGAGAGAGCTACGGAAGAGGCCGAATCCAAGCTCAAAGCCA
TCGTGGCAGCTGACAGGCAACTTCGCGCTTCCAAGCTTGAACTGAGCTCC
GCCAACAAGGCGATGGCCAATGCAGAGGCAGAGCTTCGGAGGAAGAGGAA
CCCAATCTTCTCTGCGGCGGAGACAGTGGAATTCATGCAGGTGACACGAG
TATACAACGATTTTGTGCTCGTGATTTGAGATATGTAGAGGAAAGTCCGC
TATTCGAGGAAATGGTAGCCTGCCTTTGTGCGCGTGGTCGTAAAGGACAT
GCCCGGAGAGATTGCATTACAGGTGCGGCCAATTGTCCCCACAGTCAGGC
GCATAGACACGCCTCGAACGTGATGTTCTGCGGGCCAACACGCACGATGT
CGGTGCCCTTCCAACTCTTACTTCGTAACACTCTTTGGGTGCGCGATGGC
CTCTGCATTGCAGGTGAACGATCATTCGCGCACGGGGGCACTGCACTCAA
CCGAGTATATGACGCACGAAATGTGCATTATAGTGAACATATCCAACAAG
ATGATTGGCCACATCATCGAACAACTAGTAGAGCAATTCCTCCCTGTGCG
ATCTCCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9372:6198..7257+

>mRNA_Ecto-sp8_S_contig9372.30858.1 ID=mRNA_Ecto-sp8_S_contig9372.30858.1|Name=mRNA_Ecto-sp8_S_contig9372.30858.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=435bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9372:6198..7257+ (Ectocarpus species8 EcLAC_412)
AAGGCCTTGGCAAGGAGAAACACCCTTCTGCTGACCACTGAATTAGTGAC
TACCAAGGAAGAATACGACATGGACAAATCGACCTTGCTGACGAAGCTCG
TTGCGGCGGAGAGAGCTACGGAAGAGGCCGAATCCAAGCTCAAAGCCATC
GTGGCAGCTGACAGGCAACTTCGCGCTTCCAAGCTTGAACTGAGCTCCGC
CAACAAGGCGATGGCCAATGCAGAGGCAGAGCTTCGGAGGAAGAGGAACC
CAATCTTCTCTGCGGCGGAGACAGTGGAATTCATGCAGGTGAACGATCAT
TCGCGCACGGGGGCACTGCACTCAACCGAGTATATGACGCACGAAATGTG
CATTATAGTGAACATATCCAACAAGATGATTGGCCACATCATCGAACAAC
TAGTAGAGCAATTCCTCCCTGTGCGATCTCCGTGA
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