mRNA_Ecto-sp8_S_contig9372.30857.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9372.30857.1
Unique NamemRNA_Ecto-sp8_S_contig9372.30857.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9372.30857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9372contigEcto-sp8_S_contig9372:1025..1342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size320
Hectar predicted targeting categoryother localisation
Exons1
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145293.09574-CDS-Ecto-sp8_S_contig9372:1024..13421681145293.09574-CDS-Ecto-sp8_S_contig9372:1024..1342Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9372 1025..1342 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9372.30857.1prot_Ecto-sp8_S_contig9372.30857.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9372 1025..1342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9372.30857.1

>prot_Ecto-sp8_S_contig9372.30857.1 ID=prot_Ecto-sp8_S_contig9372.30857.1|Name=mRNA_Ecto-sp8_S_contig9372.30857.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=106bp
RCCSRPLRFASSPLPQSYVGYVCRCSYHGSPLLYPGFNVFLGGGKNQKAG
CQSIQFGTAPSTCLYLLPPILSPCRKSHIHTRLKCGDSRSDVAKLCFGVK
GEEGG*
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mRNA from alignment at Ecto-sp8_S_contig9372:1025..1342+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9372.30857.1 ID=mRNA_Ecto-sp8_S_contig9372.30857.1|Name=mRNA_Ecto-sp8_S_contig9372.30857.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=318bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9372:1025..1342+ (Ectocarpus species8 EcLAC_412)
CGATGCTGCTCCCGACCGCTGCGGTTTGCTTCCAGCCCATTACCTCAGAG
CTACGTAGGTTACGTATGTCGGTGTTCGTACCACGGCTCACCGCTGCTGT
ACCCGGGTTTCAACGTTTTTCTTGGCGGAGGGAAGAACCAAAAGGCGGGG
TGTCAGAGCATACAATTCGGTACCGCACCGTCCACTTGCCTCTACCTATT
GCCCCCCATTCTTTCACCGTGCCGTAAGTCTCACATCCACACACGCTTGA
AGTGTGGGGATTCGAGGAGCGATGTGGCCAAGCTCTGCTTTGGGGTGAAG
GGGGAAGAGGGAGGATGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9372:1025..1342+

>mRNA_Ecto-sp8_S_contig9372.30857.1 ID=mRNA_Ecto-sp8_S_contig9372.30857.1|Name=mRNA_Ecto-sp8_S_contig9372.30857.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9372:1025..1342+ (Ectocarpus species8 EcLAC_412)
CGATGCTGCTCCCGACCGCTGCGGTTTGCTTCCAGCCCATTACCTCAGAG
CTACGTAGGTTACGTATGTCGGTGTTCGTACCACGGCTCACCGCTGCTGT
ACCCGGGTTTCAACGTTTTTCTTGGCGGAGGGAAGAACCAAAAGGCGGGG
TGTCAGAGCATACAATTCGGTACCGCACCGTCCACTTGCCTCTACCTATT
GCCCCCCATTCTTTCACCGTGCCGTAAGTCTCACATCCACACACGCTTGA
AGTGTGGGGATTCGAGGAGCGATGTGGCCAAGCTCTGCTTTGGGGTGAAG
GGGGAAGAGGGAGGATGA
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