mRNA_Ecto-sp8_S_contig9363.30841.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9363.30841.1
Unique NamemRNA_Ecto-sp8_S_contig9363.30841.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9363.30841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9363contigEcto-sp8_S_contig9363:3076..4022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size947
Hectar predicted targeting categoryother localisation
Exons1
Cds size480
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145291.7517037-UTR-Ecto-sp8_S_contig9363:3075..35291681145291.7517037-UTR-Ecto-sp8_S_contig9363:3075..3529Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9363 3076..3529 +
1681145291.7756796-UTR-Ecto-sp8_S_contig9363:4009..40221681145291.7756796-UTR-Ecto-sp8_S_contig9363:4009..4022Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9363 4010..4022 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145291.7631898-CDS-Ecto-sp8_S_contig9363:3529..40091681145291.7631898-CDS-Ecto-sp8_S_contig9363:3529..4009Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9363 3530..4009 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9363.30841.1prot_Ecto-sp8_S_contig9363.30841.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9363 3530..4009 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9363.30841.1

>prot_Ecto-sp8_S_contig9363.30841.1 ID=prot_Ecto-sp8_S_contig9363.30841.1|Name=mRNA_Ecto-sp8_S_contig9363.30841.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=160bp
MARQRQSRGEKKWRAVTSCRCIFGGPCKEGVLGCLLAIDCCSLKSGSDGW
EGASRDEDRETTSTGLACAWTAAVLWTNTATYYTRGSNNAVAEDAGEGQA
RYMQRNPPPQVEALQERVSLCLGVGENWGRNNVCFLFFLALRLVEGKKGC
HPGMMMATP*
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mRNA from alignment at Ecto-sp8_S_contig9363:3076..4022+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9363.30841.1 ID=mRNA_Ecto-sp8_S_contig9363.30841.1|Name=mRNA_Ecto-sp8_S_contig9363.30841.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=947bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9363:3076..4022+ (Ectocarpus species8 EcLAC_412)
AGGGCGCGAGCGCCAACTGATACTTCTCAGGAAAGCTCTCGATGAAATAT
TTCCAAAACCGCCCTTTTCGACAGTTGTACCCTCCTGGTTGTGCAAAAAT
TACGCTCTGAAAATCGTGCGCACCCCCCTCCCTGTGCGCTGACTCGCAAC
CTTACGGTAATTCTGTTTTCGGTGTGGGACAACCGTCTGCCGTGTGTCTG
TTACTCTGCAACGAACGTGCAAGGCTTATCACGGACCAAACGGTCGCTCC
CAGGAGCAGCGATTGATTCGAGATCGATCGTGCATCCACTCCCTCCCGTG
TCGCGTTGTGTGTTTACGGACGGTCGGGTGTTTTCTTTTTGTTCGGGGGG
TGGGACGTTGGCCCGTGACGCTTGCTTGCTTATGTTGTGGTTGTATTGGC
GGGTAGTATCGATCGCCACACGCTGTTGCTTTAACCACAACAAATTCGAA
AAATATGGCAAGACAGAGGCAATCTAGGGGAGAGAAAAAGTGGAGGGCCG
TGACTAGCTGTCGTTGTATTTTTGGCGGTCCGTGCAAGGAAGGGGTGTTG
GGCTGCTTGCTTGCGATTGATTGTTGTTCCCTCAAGTCAGGGAGCGACGG
TTGGGAGGGGGCATCACGTGATGAAGATCGCGAGACGACATCGACAGGGC
TGGCATGTGCCTGGACGGCCGCAGTACTCTGGACGAACACAGCAACGTAC
TATACTAGAGGTAGCAACAACGCGGTGGCAGAAGACGCGGGGGAGGGACA
AGCACGGTACATGCAGAGGAACCCCCCCCCCCAAGTTGAAGCACTACAGG
AGAGAGTGAGTCTTTGTTTAGGAGTGGGAGAGAATTGGGGACGTAATAAT
GTTTGTTTTCTCTTTTTTTTAGCGCTTCGTCTTGTGGAAGGAAAAAAGGG
GTGTCACCCGGGGATGATGATGGCAACACCATAATTCGACGTGCAAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9363:3076..4022+

>mRNA_Ecto-sp8_S_contig9363.30841.1 ID=mRNA_Ecto-sp8_S_contig9363.30841.1|Name=mRNA_Ecto-sp8_S_contig9363.30841.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9363:3076..4022+ (Ectocarpus species8 EcLAC_412)
ATGGCAAGACAGAGGCAATCTAGGGGAGAGAAAAAGTGGAGGGCCGTGAC
TAGCTGTCGTTGTATTTTTGGCGGTCCGTGCAAGGAAGGGGTGTTGGGCT
GCTTGCTTGCGATTGATTGTTGTTCCCTCAAGTCAGGGAGCGACGGTTGG
GAGGGGGCATCACGTGATGAAGATCGCGAGACGACATCGACAGGGCTGGC
ATGTGCCTGGACGGCCGCAGTACTCTGGACGAACACAGCAACGTACTATA
CTAGAGGTAGCAACAACGCGGTGGCAGAAGACGCGGGGGAGGGACAAGCA
CGGTACATGCAGAGGAACCCCCCCCCCCAAGTTGAAGCACTACAGGAGAG
AGTGAGTCTTTGTTTAGGAGTGGGAGAGAATTGGGGACGTAATAATGTTT
GTTTTCTCTTTTTTTTAGCGCTTCGTCTTGTGGAAGGAAAAAAGGGGTGT
CACCCGGGGATGATGATGGCAACACCATAA
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