mRNA_Ecto-sp8_S_contig93627.30839.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig93627.30839.1
Unique NamemRNA_Ecto-sp8_S_contig93627.30839.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig93627.30839.1 vs. uniprot
Match: D7G5E3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E3_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.880e-15
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:    1 NPPSTASTELYTTGARPSAEGTSLPVCAWGGRIGE 105
            NPPSTASTELYTTGARPSAEGTSLPVCAWGGRIG+
Sbjct:   17 NPPSTASTELYTTGARPSAEGTSLPVCAWGGRIGD 51
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BLAST of mRNA_Ecto-sp8_S_contig93627.30839.1 vs. uniprot
Match: D8LK32_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK32_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 4.160e-12
Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 3 
Query:   12 YGLNGVVHHRGETIGRGHFTACVRLGGKNWRV*ANDDTAVANMALRSVLTEEAIILAYTRQS 197
            Y L GVVHH GET   GH+TA V L G+ WR    DD+ V  +    VLTE A+IL YTR+S
Sbjct:  113 YDLTGVVHHEGETTKTGHYTAFVHLAGEEWR--RYDDSKVTKVGYEDVLTENALILTYTRRS 172
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig93627.30839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5E3_ECTSI1.880e-1597.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LK32_ECTSI4.160e-1253.23USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig93627contigEcto-sp8_S_contig93627:330..529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size200
Hectar predicted targeting categoryother localisation
Exons1
Cds size198
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145291.6833298-CDS-Ecto-sp8_S_contig93627:329..5271681145291.6833298-CDS-Ecto-sp8_S_contig93627:329..527Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig93627 330..527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig93627.30839.1prot_Ecto-sp8_S_contig93627.30839.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig93627 330..527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig93627.30839.1

>prot_Ecto-sp8_S_contig93627.30839.1 ID=prot_Ecto-sp8_S_contig93627.30839.1|Name=mRNA_Ecto-sp8_S_contig93627.30839.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=66bp
NPPSTASTELYTTGARPSAEGTSLPVCAWGGRIGECRRMTTLPLPIWLFG
VYSPRRRLSSPTLANR
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mRNA from alignment at Ecto-sp8_S_contig93627:330..529+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig93627.30839.1 ID=mRNA_Ecto-sp8_S_contig93627.30839.1|Name=mRNA_Ecto-sp8_S_contig93627.30839.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=200bp|location=Sequence derived from alignment at Ecto-sp8_S_contig93627:330..529+ (Ectocarpus species8 EcLAC_412)
AACCCGCCCTCTACGGCCTCAACGGAGTTGTACACCACCGGGGCGAGACC
ATCGGCCGAGGGCACTTCACTGCCTGTGTGCGCCTGGGGGGGAAGAATTG
GCGAGTGTAGGCGAATGACGACACTGCCGTTGCCAATATGGCTCTTCGGA
GTGTACTCACCGAGGAGGCGATTATCCTCGCCTACACTCGCCAATCGGGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig93627:330..529+

>mRNA_Ecto-sp8_S_contig93627.30839.1 ID=mRNA_Ecto-sp8_S_contig93627.30839.1|Name=mRNA_Ecto-sp8_S_contig93627.30839.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp8_S_contig93627:330..529+ (Ectocarpus species8 EcLAC_412)
AACCCGCCCTCTACGGCCTCAACGGAGTTGTACACCACCGGGGCGAGACC
ATCGGCCGAGGGCACTTCACTGCCTGTGTGCGCCTGGGGGGGAAGAATTG
GCGAGTGTAGGCGAATGACGACACTGCCGTTGCCAATATGGCTCTTCGGA
GTGTACTCACCGAGGAGGCGATTATCCTCGCCTACACTCGCCAATCGG
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