mRNA_Ecto-sp8_S_contig93571.30828.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig93571.30828.1
Unique NamemRNA_Ecto-sp8_S_contig93571.30828.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig93571.30828.1 vs. uniprot
Match: A0A6H5JL23_9PHAE (1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamideisomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JL23_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 7.730e-42
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 1
Query:    1 KDGEIDWERLEELRTAVGRDRLVLDLSCRRRPGGLERGDFLVVTNKWQKFTRFAVTRENLERLAGYCDEFLV 216
            KDGEIDWERLEELRT VG+DRLVLDLSCRRRPGGLERGDFLVVTNKWQKFTRFAVTRENLERLAGYCDEFLV
Sbjct:  174 KDGEIDWERLEELRTVVGKDRLVLDLSCRRRPGGLERGDFLVVTNKWQKFTRFAVTRENLERLAGYCDEFLV 245          
BLAST of mRNA_Ecto-sp8_S_contig93571.30828.1 vs. uniprot
Match: A0A7X7VI12_9BACT (5-proFAR isomerase n=3 Tax=Verrucomicrobia TaxID=74201 RepID=A0A7X7VI12_9BACT)

HSP 1 Score: 90.5 bits (223), Expect = 1.640e-20
Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = 1
Query:    1 KDGEIDWERLEELRTAVGRDRLVLDLSCRRRPGGLERGDFLVVTNKWQKFTRFAVTRENLERLAGYCDEFLV 216
            + G++DWERL +LR A+GR RLVLDLSCRRR       D+ VVT++WQKFT  A+   NLERLAG+C EFL+
Sbjct:  107 RQGQVDWERLAQLRAAIGRARLVLDLSCRRRGK-----DYFVVTDRWQKFTEVAIGPANLERLAGFCAEFLI 173          
BLAST of mRNA_Ecto-sp8_S_contig93571.30828.1 vs. uniprot
Match: R7KSC2_9FIRM (5-proFAR isomerase n=2 Tax=environmental samples TaxID=129701 RepID=R7KSC2_9FIRM)

HSP 1 Score: 88.6 bits (218), Expect = 9.280e-20
Identity = 43/72 (59.72%), Postives = 56/72 (77.78%), Query Frame = 1
Query:    1 KDGEIDWERLEELRTAVGRDRLVLDLSCRRRPGGLERGDFLVVTNKWQKFTRFAVTRENLERLAGYCDEFLV 216
            KDG+I +ERLE+L +AVG+DR+VLDLSCRRR G      + +VT++WQKFT   VT E++E L GYCDEFL+
Sbjct:  115 KDGKISFERLEKLCSAVGKDRVVLDLSCRRRDG-----KYYIVTDRWQKFTDTEVTAESIEMLRGYCDEFLI 181          
BLAST of mRNA_Ecto-sp8_S_contig93571.30828.1 vs. uniprot
Match: A0A2R5G2D0_9STRA (1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamideisomerase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G2D0_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.010e-19
Identity = 42/72 (58.33%), Postives = 56/72 (77.78%), Query Frame = 1
Query:    1 KDGEIDWERLEELRTAVGRDRLVLDLSCRRRPGGLERGDFLVVTNKWQKFTRFAVTRENLERLAGYCDEFLV 216
            +DG ID+++L EL +AVG++RLVLDLSCRRR    E   + VVT++WQKFT + +T+ENLE LA +C EFLV
Sbjct:  109 RDGTIDFDKLHELESAVGKERLVLDLSCRRRSNEGESPRYFVVTDRWQKFTDYEITQENLETLAQHCSEFLV 180          
BLAST of mRNA_Ecto-sp8_S_contig93571.30828.1 vs. uniprot
Match: A0A835YTK8_9STRA (1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamideisomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTK8_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.010e-19
Identity = 43/72 (59.72%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    1 KDGEIDWERLEELRTAVGRDRLVLDLSCRRRPGGLERGDFLVVTNKWQKFTRFAVTRENLERLAGYCDEFLV 216
            K G+I W+RL+EL  AVG++ LVLDLSCRRRP G   G + VVT+KWQ +T +A+TR+ + RLA  CDEFLV
Sbjct:  111 KGGQIAWDRLDELVAAVGKEHLVLDLSCRRRPDGAA-GPYYVVTDKWQAYTDYALTRDGVARLAERCDEFLV 181          
BLAST of mRNA_Ecto-sp8_S_contig93571.30828.1 vs. uniprot
Match: A0A7R9YCL8_9STRA (1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamideisomerase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCL8_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.010e-19
Identity = 43/72 (59.72%), Postives = 56/72 (77.78%), Query Frame = 1
Query:    7 GEIDWERLEELRTAVGRDRLVLDLSCRRRPGGLERGD--FLVVTNKWQKFTRFAVTRENLERLAGYCDEFLV 216
            G +++ERL+EL   VG++RLVLDLSCR+ P    +GD  + VVT++WQK+T  A+TRENLE LA YCDEFLV
Sbjct:   58 GVVNFERLQELVGLVGKERLVLDLSCRQLPAEDRQGDEDYYVVTDRWQKYTTLAITRENLELLAQYCDEFLV 129          
BLAST of mRNA_Ecto-sp8_S_contig93571.30828.1 vs. uniprot
Match: A0A081NEW1_9GAMM (5-proFAR isomerase n=1 Tax=Endozoicomonas numazuensis TaxID=1137799 RepID=A0A081NEW1_9GAMM)

HSP 1 Score: 86.7 bits (213), Expect = 4.500e-19
Identity = 40/72 (55.56%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    1 KDGEIDWERLEELRTAVGRDRLVLDLSCRRRPGGLERGDFLVVTNKWQKFTRFAVTRENLERLAGYCDEFLV 216
            KDG++++E LE+L  AVGRDRLVLDLSC+++ G     D+ +VT++WQKFT   +  E L++LA YCDEFLV
Sbjct:  108 KDGQVNFENLEKLLAAVGRDRLVLDLSCKKKDG-----DYFIVTDRWQKFTDTRINAETLKKLASYCDEFLV 174          
BLAST of mRNA_Ecto-sp8_S_contig93571.30828.1 vs. uniprot
Match: B7GE60_PHATC (1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamideisomerase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GE60_PHATC)

HSP 1 Score: 87.0 bits (214), Expect = 4.920e-19
Identity = 41/70 (58.57%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    7 GEIDWERLEELRTAVGRDRLVLDLSCRRRPGGLERGDFLVVTNKWQKFTRFAVTRENLERLAGYCDEFLV 216
            G+I  +RLE L   +G++RLVLDLSCR+RP     G + VVTN+WQ FT +AVT E+L  LA YCDEFLV
Sbjct:  125 GQIAMDRLERLVQLIGKERLVLDLSCRKRPDDHNNGPYYVVTNQWQVFTEYAVTTESLRTLAAYCDEFLV 194          
BLAST of mRNA_Ecto-sp8_S_contig93571.30828.1 vs. uniprot
Match: A0A3C0ZU43_9CLOT (5-proFAR isomerase n=2 Tax=unclassified Sarcina TaxID=2619470 RepID=A0A3C0ZU43_9CLOT)

HSP 1 Score: 86.7 bits (213), Expect = 6.680e-19
Identity = 41/72 (56.94%), Postives = 54/72 (75.00%), Query Frame = 1
Query:    1 KDGEIDWERLEELRTAVGRDRLVLDLSCRRRPGGLERGDFLVVTNKWQKFTRFAVTRENLERLAGYCDEFLV 216
            +DG +D +RLEE++ AVG+ RLVLDLSCRRR    + G F VVT++WQKFT   VT +NL  L+ +CDEFL+
Sbjct:  116 RDGRLDLDRLEEMKRAVGKKRLVLDLSCRRR----QDGSFAVVTDRWQKFTELTVTPDNLRSLSAHCDEFLI 183          
BLAST of mRNA_Ecto-sp8_S_contig93571.30828.1 vs. uniprot
Match: W4M3G5_9BACT (5-proFAR isomerase n=1 Tax=Candidatus Entotheonella gemina TaxID=1429439 RepID=W4M3G5_9BACT)

HSP 1 Score: 86.3 bits (212), Expect = 6.860e-19
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 1
Query:    1 KDGEIDWERLEELRTAVGRDRLVLDLSCRRRPGGLERGDFLVVTNKWQKFTRFAVTRENLERLAGYCDEFLV 216
            +DG +D  RLE+L TAVG  RLVLDLSCR+R G      + VVT++WQ+FT   V R+ LERLA YCDEFLV
Sbjct:  107 RDGRVDMARLEQLATAVGTHRLVLDLSCRQRSGA-----YWVVTDRWQRFTEVRVDRDTLERLAAYCDEFLV 173          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig93571.30828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JL23_9PHAE7.730e-4297.221-(5-phosphoribosyl)-5-((5-phosphoribosylamino)met... [more]
A0A7X7VI12_9BACT1.640e-2059.725-proFAR isomerase n=3 Tax=Verrucomicrobia TaxID=7... [more]
R7KSC2_9FIRM9.280e-2059.725-proFAR isomerase n=2 Tax=environmental samples T... [more]
A0A2R5G2D0_9STRA1.010e-1958.331-(5-phosphoribosyl)-5-((5-phosphoribosylamino)met... [more]
A0A835YTK8_9STRA1.010e-1959.721-(5-phosphoribosyl)-5-((5-phosphoribosylamino)met... [more]
A0A7R9YCL8_9STRA2.010e-1959.721-(5-phosphoribosyl)-5-((5-phosphoribosylamino)met... [more]
A0A081NEW1_9GAMM4.500e-1955.565-proFAR isomerase n=1 Tax=Endozoicomonas numazuen... [more]
B7GE60_PHATC4.920e-1958.571-(5-phosphoribosyl)-5-((5-phosphoribosylamino)met... [more]
A0A3C0ZU43_9CLOT6.680e-1956.945-proFAR isomerase n=2 Tax=unclassified Sarcina Ta... [more]
W4M3G5_9BACT6.860e-1959.725-proFAR isomerase n=1 Tax=Candidatus Entotheonell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig93571contigEcto-sp8_S_contig93571:20..605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score151.8
Seed ortholog evalue1.3e-34
Seed eggNOG ortholog2880.D7G369
Preferred nameHIS6
Model size216
KEGG rclassRC00945
KEGG koko:K01814
KEGG ReactionR04640
KEGG Pathwayko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230
KEGG ModuleM00026
Hectar predicted targeting categoryother localisation
GOsGO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Exons2
EggNOG free text desc.1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity
EggNOG OGsCOG0106@1,KOG3055@2759
EC5.3.1.16
Cds size216
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145290.7879765-CDS-Ecto-sp8_S_contig93571:19..811681145290.7879765-CDS-Ecto-sp8_S_contig93571:19..81Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig93571 20..81 +
1681145290.8035867-CDS-Ecto-sp8_S_contig93571:451..6051681145290.8035867-CDS-Ecto-sp8_S_contig93571:451..605Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig93571 452..605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig93571.30828.1prot_Ecto-sp8_S_contig93571.30828.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig93571 20..605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig93571.30828.1

>prot_Ecto-sp8_S_contig93571.30828.1 ID=prot_Ecto-sp8_S_contig93571.30828.1|Name=mRNA_Ecto-sp8_S_contig93571.30828.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=72bp
KDGEIDWERLEELRTAVGRDRLVLDLSCRRRPGGLERGDFLVVTNKWQKF
TRFAVTRENLERLAGYCDEFLV
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mRNA from alignment at Ecto-sp8_S_contig93571:20..605+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig93571.30828.1 ID=mRNA_Ecto-sp8_S_contig93571.30828.1|Name=mRNA_Ecto-sp8_S_contig93571.30828.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=586bp|location=Sequence derived from alignment at Ecto-sp8_S_contig93571:20..605+ (Ectocarpus species8 EcLAC_412)
AAGGACGGGGAAATCGACTGGGAGAGGCTGGAAGAGCTCCGAACAGCCGT AGGGAGGGATAGGTGAGCCGCCCAAACGGGCTATAGCCACTTCTCGCCGA GACCTTGACGCTTTTGCGTATAGGAGTCCGTTCCTGCAACTATTCTTGTT TTGTTTACATGTGTGGATGTCGTCCGTGGGTTGTGCCAGACTCAGACGCG TATAGTGCCCTTGGTTGGAATCGAGCCTTGTTGCTGCACTATTTAGCGTC AACTTCTACTAAAGTGGCGCTTAAGCGATTTTGTTGCATGTCGGCTGACA TCGTAACATCCAACAAATACCGCGTATCAAACCGGTGACGTGTTCGTTTC CATCGTCACCCCTTGAGCGTTTGCTCTCCGGGAAACGTTTGCACGACTCA AACTTACAGCTTTTCCTGCGTCTTAATTTCAGGCTAGTGCTTGACCTCAG CTGCCGAAGGCGTCCCGGGGGTCTGGAGCGGGGAGACTTTTTGGTGGTGA CCAACAAGTGGCAAAAGTTCACCCGCTTCGCCGTCACACGGGAAAACCTC GAGCGGTTAGCGGGCTACTGCGACGAGTTCTTGGTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig93571:20..605+

>mRNA_Ecto-sp8_S_contig93571.30828.1 ID=mRNA_Ecto-sp8_S_contig93571.30828.1|Name=mRNA_Ecto-sp8_S_contig93571.30828.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp8_S_contig93571:20..605+ (Ectocarpus species8 EcLAC_412)
AAGGACGGGGAAATCGACTGGGAGAGGCTGGAAGAGCTCCGAACAGCCGT
AGGGAGGGATAGGCTAGTGCTTGACCTCAGCTGCCGAAGGCGTCCCGGGG
GTCTGGAGCGGGGAGACTTTTTGGTGGTGACCAACAAGTGGCAAAAGTTC
ACCCGCTTCGCCGTCACACGGGAAAACCTCGAGCGGTTAGCGGGCTACTG
CGACGAGTTCTTGGTG
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