mRNA_Ecto-sp8_S_contig93528.30823.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig93528.30823.1
Unique NamemRNA_Ecto-sp8_S_contig93528.30823.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig93528.30823.1 vs. uniprot
Match: A0A6H5KT61_9PHAE (Hira domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT61_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 8.010e-41
Identity = 87/91 (95.60%), Postives = 88/91 (96.70%), Query Frame = 1 
Query:    4 QVVLPALSGNRSLQRLVSEYYDNLEYVSKSRRQQLPPP--PSPLEQRTPRAPAAAIPHIAEGSSVGSVVGDDAASSAASGTRGSGSTPASG 270
            +VVLPALSGNRSLQRLVSEYYDNLEYVSKSRRQQLPPP  PSPLEQRTPR PAAAIPHIAEGSSVGSVVGDDAASSAASGTRGSGSTPASG
Sbjct: 1079 KVVLPALSGNRSLQRLVSEYYDNLEYVSKSRRQQLPPPAPPSPLEQRTPRGPAAAIPHIAEGSSVGSVVGDDAASSAASGTRGSGSTPASG 1169
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig93528.30823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KT61_9PHAE8.010e-4195.60Hira domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig93528contigEcto-sp8_S_contig93528:19..290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score153.3
Seed ortholog evalue5.4e-35
Seed eggNOG ortholog2880.D8LCZ9
Preferred nameHIRA
Model size272
KEGG koko:K11293
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000122,GO:0000228,GO:0000278,GO:0000280,GO:0000417,GO:0000775,GO:0000785,GO:0000790,GO:0000819,GO:0001503,GO:0001649,GO:0001673,GO:0001674,GO:0003674,GO:0003682,GO:0003700,GO:0003712,GO:0003714,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006338,GO:0006342,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006725,GO:0006807,GO:0006996,GO:0006997,GO:0007049,GO:0007059,GO:0007275,GO:0007338,GO:0007369,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009566,GO:0009653,GO:0009790,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016458,GO:0016604,GO:0016605,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0030154,GO:0030447,GO:0030448,GO:0030466,GO:0030702,GO:0030874,GO:0030875,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031491,GO:0031497,GO:0031935,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0034401,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034724,GO:0034728,GO:0035039,GO:0035041,GO:0035042,GO:0040007,GO:0040029,GO:0042585,GO:0042692,GO:0043044,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044454,GO:0044464,GO:0044703,GO:0044877,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0048598,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051704,GO:0060255,GO:0060968,GO:0061061,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070828,GO:0070868,GO:0070925,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097549,GO:0097659,GO:0098687,GO:0098813,GO:0140014,GO:0140110,GO:1900239,GO:1901360,GO:1901362,GO:1901576,GO:1902275,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1990141,GO:2000112,GO:2000113,GO:2001141
Exons1
EggNOG free text desc.DNA replication-independent nucleosome assembly
EggNOG OGsKOG0973@1,KOG0973@2759
Ec32 ortholog descriptionTUP1-like enhancer of split
Ec32 orthologEc-01_001710.2
Cds size270
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145290.492604-CDS-Ecto-sp8_S_contig93528:18..2881681145290.492604-CDS-Ecto-sp8_S_contig93528:18..288Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig93528 19..288 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig93528.30823.1prot_Ecto-sp8_S_contig93528.30823.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig93528 19..288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig93528.30823.1

>prot_Ecto-sp8_S_contig93528.30823.1 ID=prot_Ecto-sp8_S_contig93528.30823.1|Name=mRNA_Ecto-sp8_S_contig93528.30823.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=90bp
EQVVLPALSGNRSLQRLVSEYYDNLEYVSKSRRQQLPPPPSPLEQRTPRA
PAAAIPHIAEGSSVGSVVGDDAASSAASGTRGSGSTPASG
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mRNA from alignment at Ecto-sp8_S_contig93528:19..290+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig93528.30823.1 ID=mRNA_Ecto-sp8_S_contig93528.30823.1|Name=mRNA_Ecto-sp8_S_contig93528.30823.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=272bp|location=Sequence derived from alignment at Ecto-sp8_S_contig93528:19..290+ (Ectocarpus species8 EcLAC_412)
GAGCAGGTTGTGCTCCCGGCGCTTAGCGGGAACCGCAGCCTCCAACGCCT
CGTCAGCGAGTACTACGATAACCTCGAGTACGTTTCGAAGTCGAGGCGAC
AGCAGCTACCACCGCCGCCGTCACCTCTCGAACAGCGGACCCCGCGAGCT
CCCGCCGCAGCCATTCCGCACATCGCCGAAGGTTCTTCGGTTGGCTCTGT
CGTCGGAGACGACGCCGCTTCTTCTGCCGCTAGCGGCACTAGGGGCTCTG
GTTCGACCCCTGCCTCCGGTGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig93528:19..290+

>mRNA_Ecto-sp8_S_contig93528.30823.1 ID=mRNA_Ecto-sp8_S_contig93528.30823.1|Name=mRNA_Ecto-sp8_S_contig93528.30823.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp8_S_contig93528:19..290+ (Ectocarpus species8 EcLAC_412)
GAGCAGGTTGTGCTCCCGGCGCTTAGCGGGAACCGCAGCCTCCAACGCCT
CGTCAGCGAGTACTACGATAACCTCGAGTACGTTTCGAAGTCGAGGCGAC
AGCAGCTACCACCGCCGCCGTCACCTCTCGAACAGCGGACCCCGCGAGCT
CCCGCCGCAGCCATTCCGCACATCGCCGAAGGTTCTTCGGTTGGCTCTGT
CGTCGGAGACGACGCCGCTTCTTCTGCCGCTAGCGGCACTAGGGGCTCTG
GTTCGACCCCTGCCTCCGGT
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