mRNA_Ecto-sp8_S_contig935.30818.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig935.30818.1
Unique NamemRNA_Ecto-sp8_S_contig935.30818.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig935.30818.1 vs. uniprot
Match: A0A6H5K0Z2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Z2_9PHAE)

HSP 1 Score: 274 bits (701), Expect = 6.920e-90
Identity = 135/144 (93.75%), Postives = 139/144 (96.53%), Query Frame = 1 
Query:    1 MVPLEDQIFNAVGTTGGIILACALVPQIVLAHKRRSAEDISYMWQAIYITGLATLMIYYVHFGLWAVFFPVAVECSCLIYLTGLKVYFEKFASGDGPSEKLAPSSHVVGEGTGINSVRGAGRSPQIGRYGAAGCASSPDISLRA 432
            MVPL+DQIFNAVGTTGGIILACALVPQIVLAHKRRSAEDISYMWQAIY+TGLATLMIYYVHFGLWAVFFPVAVECSCLIYLT LK+YFEKFASGDG SEKL PSSHVVGEGTGINS R AGRSPQIGRYGAAGCASSP+ISLRA
Sbjct:    4 MVPLDDQIFNAVGTTGGIILACALVPQIVLAHKRRSAEDISYMWQAIYVTGLATLMIYYVHFGLWAVFFPVAVECSCLIYLTALKMYFEKFASGDGISEKLTPSSHVVGEGTGINSARDAGRSPQIGRYGAAGCASSPEISLRA 147
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BLAST of mRNA_Ecto-sp8_S_contig935.30818.1 vs. uniprot
Match: D8LCW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW9_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 3.700e-29
Identity = 58/97 (59.79%), Postives = 71/97 (73.20%), Query Frame = 1 
Query:   13 EDQIFNAVGTTGGIILACALVPQIVLAHKRRSAEDISYMWQAIYITGLATLMIYYVHFGLWAVFFPVAVECSCLIYLTGLKVYFEKFASGDGPSEKL 303
            ED  FN +G  GG++LA AL+PQI LAH R+S  DISY+WQA+Y  GL TLMIYY HF LWAVF+P+A E S L+YLTGLK+Y+E       P E+L
Sbjct:    5 EDP-FNIIGFVGGVVLATALLPQIYLAHSRKSTADISYLWQAVYTVGLLTLMIYYFHFRLWAVFYPMAFEFSSLMYLTGLKIYYEVCLGNVAPPEEL 100
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BLAST of mRNA_Ecto-sp8_S_contig935.30818.1 vs. uniprot
Match: A0A8K1C8K9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C8K9_PYTOL)

HSP 1 Score: 69.7 bits (169), Expect = 3.670e-11
Identity = 31/82 (37.80%), Postives = 52/82 (63.41%), Query Frame = 1 
Query:   25 FNAVGTTGGIILACALVPQIVLAHKRRSAEDISYMWQAIYITGLATLMIYYVHFGLWAVFFPVAVECSCLIYLTGLKVYFEK 270
            F+ +G  G  +++ ALVPQI   ++ +SA DISY +  +Y+TGL  ++IY +   LW ++ P A+E    I L G+K +F++
Sbjct:    7 FDILGLVGSFLISAALVPQIQKVYRTKSANDISYSFMCLYVTGLTMIVIYGIGEALWPIYIPCALELLGAISLLGMKCHFDR 88
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BLAST of mRNA_Ecto-sp8_S_contig935.30818.1 vs. uniprot
Match: A0A0L0S376_ALLM3 (Uncharacterized protein n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0S376_ALLM3)

HSP 1 Score: 69.7 bits (169), Expect = 4.060e-11
Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 1 
Query:    1 MVPLEDQIFNAVGTTGGIILACALVPQIVLAHKRRSAEDISYMWQAIYITGLATLMIYYVHFGLWAVFFPVAVECSCLIYLTGLKVYFEK 270
            M  L      A+G  GG++LA  L PQI+   + RSAEDISY WQ +Y+ GL+  + Y V  G  A +  V +E + L+ L   K +F++
Sbjct:    1 MTNLSTPEVEAIGYVGGVVLALCLAPQIIQVVRTRSAEDISYAWQGLYLVGLSINLAYLVLLGAVAGYVAVIIEIALLLVLVVCKFFFDR 90
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BLAST of mRNA_Ecto-sp8_S_contig935.30818.1 vs. uniprot
Match: A0A1E7FTB5_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FTB5_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 5.570e-10
Identity = 31/81 (38.27%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:   28 NAVGTTGGIILACALVPQIVLAHKRRSAEDISYMWQAIYITGLATLMIYYVHFGLWAVFFPVAVECSCLIYLTGLKVYFEK 270
            + +G  GG  ++ +L+PQ+      +SA DISY +QAIYI G    +IY     LW V+ P+ +E + +I LT +KV F++
Sbjct:    7 DIIGFVGGTTISLSLIPQVYKTFHSKSAGDISYYYQAIYIVGCTLTLIYAAALRLWPVYIPITLELTLIISLTVMKVIFDR 87
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BLAST of mRNA_Ecto-sp8_S_contig935.30818.1 vs. uniprot
Match: A0A7S1Y593_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y593_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 5.650e-7
Identity = 32/85 (37.65%), Postives = 45/85 (52.94%), Query Frame = 1 
Query:   13 EDQIFNAVGTTGGIILACALVPQIVLAHKRRSAEDISYMWQAIYITGLATLMIYYVHFGLWAVFFPVAVECSCLIYLTGLKVYFE 267
            E      +G  GG++LA ALVPQ++ + K +S  DISY WQ IYI GL     Y++     A +  +  E  C   L  LK+ F+
Sbjct:    8 EVDYIEIIGYVGGVVLAVALVPQVIKSWKEKSTADISYSWQVIYIVGLWLNFAYFILVDAVAAWVTLLFEIVCAHLLVLLKLRFD 92
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BLAST of mRNA_Ecto-sp8_S_contig935.30818.1 vs. uniprot
Match: A0A7J7PZ05_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PZ05_9CHLO)

HSP 1 Score: 60.1 bits (144), Expect = 9.820e-7
Identity = 32/91 (35.16%), Postives = 47/91 (51.65%), Query Frame = 1 
Query:   10 LEDQIFNAVGTTGGIILACALVPQIVLAHKRRSAEDISYMWQAIYITGLATLMIYYVHFGLWAVFFPVAVECSCLIYLTGLKVYFEKFASG 282
            L     +A+G TGG +LA  L+PQI      RSA DISY W  +Y+ G    ++Y V     A + P+ +E +  + +  LK  FE   +G
Sbjct:   12 LSPAAMDAIGYTGGCVLAICLIPQIGKIVITRSARDISYAWSVLYLIGTCLSLVYLVLKDAMAAWIPLVIEIAGCLCVICLKTLFEHTRAG 102
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BLAST of mRNA_Ecto-sp8_S_contig935.30818.1 vs. uniprot
Match: A0A383VKW1_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VKW1_TETOB)

HSP 1 Score: 60.1 bits (144), Expect = 1.000e-6
Identity = 33/91 (36.26%), Postives = 47/91 (51.65%), Query Frame = 1 
Query:   10 LEDQIFNAVGTTGGIILACALVPQIVLAHKRRSAEDISYMWQAIYITGLATLMIYYVHFGLWAVFFPVAVECSCLIYLTGLKVYFEKFASG 282
            L     +A+G TGG +LA  L+PQI      RSA DISY W  +Y+ G+   + Y +     A + P+ +E +  I +  LK  FE  A G
Sbjct:   14 LSPAAMDAIGYTGGGVLAVCLIPQIGKIILTRSARDISYAWSVMYMIGMTLSLAYLIMKDAMAAWIPLVIEIAGCIAIILLKTLFEHTARG 104
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BLAST of mRNA_Ecto-sp8_S_contig935.30818.1 vs. uniprot
Match: A0A2D6SQC4_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Woesearchaeota archaeon TaxID=2026803 RepID=A0A2D6SQC4_9ARCH)

HSP 1 Score: 56.2 bits (134), Expect = 1.010e-6
Identity = 27/81 (33.33%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:   25 FNAVGTTGGIILACALVPQIVLAHKRRSAEDISYMWQAIYITGLATLMIYYVHFGLWAVFFPVAVECSCLIYLTGLKVYFE 267
            F  VG T G+++A AL+PQ++ + K +S +DIS +W +I +TGLA  ++Y +   +W +     +E    + L  LK+ ++
Sbjct:    4 FELVGYTAGLLVAVALIPQLIKSWKTKSTKDISIIWTSILMTGLALWIVYGIGNLIWPIIVFATIEFLMTLSLFVLKLMYK 84
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig935.30818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5K0Z2_9PHAE6.920e-9093.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCW9_ECTSI3.700e-2959.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8K1C8K9_PYTOL3.670e-1137.80Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0L0S376_ALLM34.060e-1138.89Uncharacterized protein n=2 Tax=Allomyces macrogyn... [more]
A0A1E7FTB5_9STRA5.570e-1038.27Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S1Y593_9STRA5.650e-737.65Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7J7PZ05_9CHLO9.820e-735.16Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]
A0A383VKW1_TETOB1.000e-636.26Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A2D6SQC4_9ARCH1.010e-633.33Uncharacterized protein n=1 Tax=Candidatus Woesear... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig935contigEcto-sp8_S_contig935:14801..18118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score73.9
Seed ortholog evalue6.7e-11
Seed eggNOG ortholog2880.D7G1V2
Model size1008
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG free text desc.PQ loop repeat
EggNOG OGs2CZ06@1,2S7J2@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_007200.1
Cds size435
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145290.1953862-CDS-Ecto-sp8_S_contig935:14800..149351681145290.1953862-CDS-Ecto-sp8_S_contig935:14800..14935Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig935 14801..14935 +
1681145290.2080243-CDS-Ecto-sp8_S_contig935:16579..166741681145290.2080243-CDS-Ecto-sp8_S_contig935:16579..16674Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig935 16580..16674 +
1681145290.21893-CDS-Ecto-sp8_S_contig935:17340..175451681145290.21893-CDS-Ecto-sp8_S_contig935:17340..17545Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig935 17341..17545 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145290.2297263-UTR-Ecto-sp8_S_contig935:17545..181181681145290.2297263-UTR-Ecto-sp8_S_contig935:17545..18118Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig935 17546..18118 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig935.30818.1prot_Ecto-sp8_S_contig935.30818.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig935 14801..17545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig935.30818.1

>prot_Ecto-sp8_S_contig935.30818.1 ID=prot_Ecto-sp8_S_contig935.30818.1|Name=mRNA_Ecto-sp8_S_contig935.30818.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=145bp
MVPLEDQIFNAVGTTGGIILACALVPQIVLAHKRRSAEDISYMWQAIYIT
GLATLMIYYVHFGLWAVFFPVAVECSCLIYLTGLKVYFEKFASGDGPSEK
LAPSSHVVGEGTGINSVRGAGRSPQIGRYGAAGCASSPDISLRA*
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mRNA from alignment at Ecto-sp8_S_contig935:14801..18118+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig935.30818.1 ID=mRNA_Ecto-sp8_S_contig935.30818.1|Name=mRNA_Ecto-sp8_S_contig935.30818.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3318bp|location=Sequence derived from alignment at Ecto-sp8_S_contig935:14801..18118+ (Ectocarpus species8 EcLAC_412)
ATGGTGCCCCTTGAGGATCAGATTTTCAACGCCGTGGGGACCACCGGCGG
CATTATACTCGCATGCGCCTTGGTGCCACAAATTGTCCTTGCCCACAAAC
GCCGCTCGGCAGAGGACATCAGCTACATGTGGCAGGTAAAGGTGGTATGC
ATATGGTCTACTATCGGTGTCGCCATCAACATCATTTGTCGTCGGTTGAC
GTGCTGACCTTCATCAACCTTTGAAGTTGCGGATGTTCGGATATTTTAGG
AATACCCCTGTCGCTTGACATTGGGGTGCCTGCCACGCTGCGTGCCATGC
ACGAGAGCCATGTCTTGACCCCTTGAAATATTGAAGGAGCTGGGCCAACT
GTCAAAGTTGAAAGGAAGAGGTGTCATTCTTGATGGACACTTGCTTCGAA
GCCATCAAATAACACGCCATTGATGGCAACTGCCCACGAACTCAGATTGG
GAGGCCATCCATGCGACGCAAGTGCGACGAATGCTTACCGACACACACCT
CTTCCTTCGTCGCACCCATCGGTTTTCAAAGAGTCTAAACTCGCTGCTCT
TGGTAGTTCGTTGCTGCAGCGTGGAGTACTCGTAAGCTGAGCATGGGCTG
GTTAGGTGAGCTGATCACTCGGCAGTCTCAGGAGCCTACCCGCCGCCTTT
ACGATTACCATACGCATTTCGAGCGAGACCAAAGAACGCGCCGGATGAAA
TTGCTGTTGGACAAGTGCAGTGGAGAGATGCGGGTGCGGTGGTAGGGCCG
TGGGTTTTTCTTGAGCGGAGCACGCCGTAGAGCAGGGAGGAGATCCGGCC
ATCGAAGAGCAGGATGAAGGTCGCATTGTAAATACGACGGGCGTTACAAT
AGTAGAGCGGGGAGGGCGATCACGCCGAACGTGACCGTTGTGGACCTCCA
AGGGGTTCAACGTTTGCTCAGATGCGTCAATATTTCAGCCGATGCCGCGT
GTGTATTTCTACCCTATGGTGATCGCGGAAGCTGCGGTACTTCGGGTCCA
GAGGTCTCTATTGAGCGACGTTCGATTTTTCTCTGCTTTATGAACATGCT
GCTCTCAAGTGCCAGGTTGAATCCACCCCCGGAAAAAAAACCCAACTGTC
CTCTGAATGGGGTCCTCGGCATAGAAATAAGAACAAAACCCCGTTTACCA
TACGGAAGTACTTGCCTGAAATAAAAACTATTAATGAGAACAGGTGCTCG
ATTTGAGGCAGCCAATCAGCATCAAGCCTCGGCCAAAATAAGCGGTTCTT
ATGTGCGGGTGCCATCAGCTTGTGAAAAAGAGGAGATTGATACATTTTGC
CGTTTCGGTGTCAACAACACAACGGCAGCGACAACCGGAACAACAACAGC
AACAACAACGACAACAATTACGGACGATACCAATGTAGCCAAATAGGTGT
TGCTCGCCAGGCACGATGAATAATCGACAGGTTGCCGTGTCAGACGGTGC
GGTCCTAGGAAGACAGCGGTGATAGCGAGAACTTTCCAAAGACGTGTCGT
TCGATGAAACATCAAGCCCTGCAGGGTGGTCGAGATATTCGAAGTTTCAC
CATCTTGTTCCGCGGCAAAGGGCCCATTTTGTGCGGCCCCGGATCCTAGC
TCTTCGGTAGAGAACTCGAACCCGTACGGTGGATACGGAATAGAAAATTG
GGGTGGGCTTTGTGCCCGATGACCACGCGACGGAAATTACCCGATGATCT
GCTGTTTTCTTGCACAAGCTGGCGGCATTGGGATGGTACTAATCTAACCG
GGATTCGCGCCATCCTCGCGCCCACGCAGGCTATCTACATCACGGGACTG
GCGACGTTGATGATTTACTACGTGCACTTTGGACTTTGGGCAGTTTTTTT
TCCTGTCGCGGTTGAATGCTCGTGGTGAGTTCATCTTTGGAGGGGGGTTG
GGCCAGATTTATGCATGACTTACGACGTTCGTCCAAGGTGCAGCTTCACT
TGATTAGCCGTGCTGCTCCGCTGACCGCCGGTACTCGAACTAACTCCACG
CCGCTGTACTTCTTAACGGCCCTCGCCTTGTGATAATTAATGTTTTCCCG
CCGTTTGCATCCTAGGTTTGCGCTAACCTCCTCACCGACAAGCTCCAGAA
ACCACGGCTATTTCCGCCCCTCATGGCCTAATTCCGGCGGCAAACTCGAA
ATACCGCGTATCCTGCTGCTATTGTTGTTGTTGTTGTTGGTGGTGGTGTT
GGTGTTGTTGCTGTTTTCACGGTATTCACCGGGCTGATCTCCGCTTAAGT
GGCTTCTGACAGCCGCACTCGTTAACCAACCTGGGCGCCTTCTCAACGTT
TTCGAGATTCAAGTTGGACGGAAATGCGGAAGGTTCCGTGTGTTCTTGAC
CTTTTTCGTAACGAACATAGAAACGACGACAGTAGTTCGCGCCGCACGGA
GCCGAGAAAATGTGCGGCGATCAAAACGAGTGTTGAGGCAACCGAAGAAA
GACGATTTCGCTCTTGCCTTCTTCCAACCCCTCCCTAACCGCACCCGATT
CGTGCGCTCTTCCCTTTTCCCAACCCCTGCCCGATTCCAGCCTCATCTAT
CTCACCGGCTTGAAAGTGTACTTCGAGAAGTTCGCCAGTGGAGATGGACC
CTCGGAAAAACTCGCACCATCGTCGCATGTCGTCGGCGAGGGCACCGGCA
TCAATTCCGTAAGAGGCGCTGGTCGAAGCCCCCAGATCGGTAGATACGGC
GCCGCCGGGTGTGCTTCCTCGCCGGATATTTCCCTAAGAGCATGATGGGT
GTTGTTTCGGAAATTTCACGTCTGGCGTATGCAGGAACAGGGGCACGCTA
GTAGTGTGCTGTTGGAGAGACGCGAGACCGTGGATTCCCATACCGGGGCG
AGGCATCACCAACTGTTTTCGCGGATCAGCTAGGGAATGTCGGAAGCGGG
AGGGAAAGGGGAAAGGGAAGACGGTCATGATCAATCATTGGCGATCGTAT
GGGAAATGCCGTTTTTTCACCGAAGTTAGCGTCTCTCTCGAGACTGGAAC
GATTCGCTACAGCTGTACCGAGATCGGGAGTGGGGGGTATATCTTTGACC
GGAGAGTACTGCCTCGGAACCCACGGCCTTTTGTTCTTCGTTGGTGATTC
GTCTACGGGTTGGTAAGTGGACGTTGAACCTGTTTTTTGTAACGCCGCCG
CGCGTTGGGTGCATTGTCGGACCCGCATATGCGGTGCACCATGGAGGTTT
GTAAGGGGCGCTGCAAATCCGATGGATTCGCCCGGCACCTGAGCAGAAGC
AACGACACATTAGCCTACCATTCTATGAGTCGGCGGGTGCTTGAGACCTG
AACCTGTGCATGGGGAAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig935:14801..18118+

>mRNA_Ecto-sp8_S_contig935.30818.1 ID=mRNA_Ecto-sp8_S_contig935.30818.1|Name=mRNA_Ecto-sp8_S_contig935.30818.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=435bp|location=Sequence derived from alignment at Ecto-sp8_S_contig935:14801..18118+ (Ectocarpus species8 EcLAC_412)
ATGGTGCCCCTTGAGGATCAGATTTTCAACGCCGTGGGGACCACCGGCGG
CATTATACTCGCATGCGCCTTGGTGCCACAAATTGTCCTTGCCCACAAAC
GCCGCTCGGCAGAGGACATCAGCTACATGTGGCAGGCTATCTACATCACG
GGACTGGCGACGTTGATGATTTACTACGTGCACTTTGGACTTTGGGCAGT
TTTTTTTCCTGTCGCGGTTGAATGCTCGTGCCTCATCTATCTCACCGGCT
TGAAAGTGTACTTCGAGAAGTTCGCCAGTGGAGATGGACCCTCGGAAAAA
CTCGCACCATCGTCGCATGTCGTCGGCGAGGGCACCGGCATCAATTCCGT
AAGAGGCGCTGGTCGAAGCCCCCAGATCGGTAGATACGGCGCCGCCGGGT
GTGCTTCCTCGCCGGATATTTCCCTAAGAGCATGA
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