mRNA_Ecto-sp8_S_contig93481.30813.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig93481.30813.1
Unique NamemRNA_Ecto-sp8_S_contig93481.30813.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig93481.30813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig93481contigEcto-sp8_S_contig93481:14..511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start0
Seed ortholog score68.9
Seed ortholog evalue2.5e-09
Seed eggNOG ortholog224911.27349121
Model size498
KEGG rclassRC02795
KEGG koko:K02341
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440
KEGG ModuleM00260
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.replication factor c
EggNOG OGsCOG0470@1,COG0470@2
EC2.7.7.7
Cds size498
COG Functional cat.L
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145289.7871256-CDS-Ecto-sp8_S_contig93481:13..5111681145289.7871256-CDS-Ecto-sp8_S_contig93481:13..511Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig93481 14..511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig93481.30813.1prot_Ecto-sp8_S_contig93481.30813.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig93481 14..511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig93481.30813.1

>prot_Ecto-sp8_S_contig93481.30813.1 ID=prot_Ecto-sp8_S_contig93481.30813.1|Name=mRNA_Ecto-sp8_S_contig93481.30813.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=166bp
ETQYFLNSVTKQYIKEKSVSLEFHKAIVERVRSFRAGALKKSRELINLEK
DFERYISRQDYLEIKSLFEKTYDAKLTENPGFRKLRGRAFLLQSPPKIID
AREDFKFCVQMNHEDAEIMRLWLQMEKENNSPAMERIDICNHVINGKSYA
SEVKHEFISKRASIYY
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mRNA from alignment at Ecto-sp8_S_contig93481:14..511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig93481.30813.1 ID=mRNA_Ecto-sp8_S_contig93481.30813.1|Name=mRNA_Ecto-sp8_S_contig93481.30813.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=498bp|location=Sequence derived from alignment at Ecto-sp8_S_contig93481:14..511+ (Ectocarpus species8 EcLAC_412)
GAGACCCAGTATTTTTTAAATAGTGTTACGAAACAATACATAAAAGAAAA
ATCAGTTAGCCTTGAATTTCATAAAGCAATTGTTGAACGTGTGAGATCCT
TCAGAGCTGGTGCGTTAAAAAAATCACGGGAACTAATCAATTTAGAAAAA
GATTTTGAAAGATACATTAGTAGGCAAGATTATCTTGAGATTAAATCACT
ATTTGAAAAAACATACGATGCAAAATTAACAGAAAATCCTGGCTTCCGAA
AATTAAGGGGCCGTGCATTTCTACTTCAGTCACCACCAAAAATTATTGAC
GCTCGCGAAGATTTTAAATTTTGTGTTCAGATGAATCATGAAGATGCAGA
AATCATGAGACTTTGGCTTCAAATGGAAAAAGAAAATAACAGCCCAGCCA
TGGAAAGAATTGATATTTGTAACCATGTAATAAATGGCAAAAGTTACGCT
TCAGAAGTAAAACACGAGTTTATTTCAAAACGTGCATCAATATACTAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig93481:14..511+

>mRNA_Ecto-sp8_S_contig93481.30813.1 ID=mRNA_Ecto-sp8_S_contig93481.30813.1|Name=mRNA_Ecto-sp8_S_contig93481.30813.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp8_S_contig93481:14..511+ (Ectocarpus species8 EcLAC_412)
GAGACCCAGTATTTTTTAAATAGTGTTACGAAACAATACATAAAAGAAAA
ATCAGTTAGCCTTGAATTTCATAAAGCAATTGTTGAACGTGTGAGATCCT
TCAGAGCTGGTGCGTTAAAAAAATCACGGGAACTAATCAATTTAGAAAAA
GATTTTGAAAGATACATTAGTAGGCAAGATTATCTTGAGATTAAATCACT
ATTTGAAAAAACATACGATGCAAAATTAACAGAAAATCCTGGCTTCCGAA
AATTAAGGGGCCGTGCATTTCTACTTCAGTCACCACCAAAAATTATTGAC
GCTCGCGAAGATTTTAAATTTTGTGTTCAGATGAATCATGAAGATGCAGA
AATCATGAGACTTTGGCTTCAAATGGAAAAAGAAAATAACAGCCCAGCCA
TGGAAAGAATTGATATTTGTAACCATGTAATAAATGGCAAAAGTTACGCT
TCAGAAGTAAAACACGAGTTTATTTCAAAACGTGCATCAATATACTAC
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