mRNA_Ecto-sp8_S_contig93461.30809.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig93461.30809.1
Unique NamemRNA_Ecto-sp8_S_contig93461.30809.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig93461.30809.1 vs. uniprot
Match: A0A6H5J7V5_9PHAE (VHS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J7V5_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.100e-23
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 1 
Query:    1 LTEVIRILRKKLGSSNTMVLSVALTLAETLVKNCHDPVHREIASERFMAAVAKI 162
            LTEVIRILRKKLGSSNT VLSVALTLAETLVKNCHDPVHREIASERFMAAVAKI
Sbjct:   58 LTEVIRILRKKLGSSNTTVLSVALTLAETLVKNCHDPVHREIASERFMAAVAKI 111
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BLAST of mRNA_Ecto-sp8_S_contig93461.30809.1 vs. uniprot
Match: A0A835YSD0_9STRA (VHS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSD0_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.080e-7
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    7 EVIRILRKKLGSSNTMVLSVALTLAETLVKNCHDPVHREIASERFM 144
            EV+R +RK+L   +  V+ +ALTL ETLVKNC  P+HREIA E FM
Sbjct:   65 EVVRAVRKRLAHKSIPVVMLALTLTETLVKNCGMPLHREIAKENFM 110
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BLAST of mRNA_Ecto-sp8_S_contig93461.30809.1 vs. uniprot
Match: A0A0P1AM73_PLAHL (VHS domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AM73_PLAHL)

HSP 1 Score: 54.3 bits (129), Expect = 3.880e-7
Identity = 27/54 (50.00%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 LTEVIRILRKKLGSSNTMVLSVALTLAETLVKNCHDPVHREIASERFMAAVAKI 162
            L E IR LR +LG  ++ V+ +ALTL E++VKNC D VH+EIA+E+FM+ + ++
Sbjct:   78 LKESIRYLRLRLGDPSSRVVILALTLTESIVKNCGDLVHQEIATEQFMSEMEEL 131
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BLAST of mRNA_Ecto-sp8_S_contig93461.30809.1 vs. uniprot
Match: A0A4D9CTC8_9STRA (VHS domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTC8_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 5.310e-7
Identity = 25/52 (48.08%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    7 EVIRILRKKLGSSNTMVLSVALTLAETLVKNCHDPVHREIASERFMAAVAKI 162
            E+IR +RK+L   +T V+ +AL L ET+VKNC   VH+E+A+ +FMA +A++
Sbjct:   64 EIIRQIRKRLQHRSTRVVHMALELIETVVKNCGPSVHKEVATPKFMATMARV 115
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BLAST of mRNA_Ecto-sp8_S_contig93461.30809.1 vs. uniprot
Match: A0A3R7IPJ5_9STRA (VHS domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7IPJ5_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 9.890e-7
Identity = 27/54 (50.00%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 LTEVIRILRKKLGSSNTMVLSVALTLAETLVKNCHDPVHREIASERFMAAVAKI 162
            L E IR LR +LG  ++ V+ +ALTL E++VKNC D VH+EIA+E FM  + ++
Sbjct:   82 LKESIRYLRLRLGDPSSRVVILALTLTESIVKNCGDLVHQEIATETFMGEMEEL 135
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BLAST of mRNA_Ecto-sp8_S_contig93461.30809.1 vs. uniprot
Match: A0A3M6VSQ9_9STRA (VHS domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VSQ9_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 9.910e-7
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 LTEVIRILRKKLGSSNTMVLSVALTLAETLVKNCHDPVHREIASERFM 144
            L E +R LR +LG  ++ V+ +ALTL E++VKNC D VH+EIASE FM
Sbjct:   11 LKESVRYLRLRLGDPSSRVVVLALTLTESIVKNCGDLVHQEIASESFM 58
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BLAST of mRNA_Ecto-sp8_S_contig93461.30809.1 vs. uniprot
Match: A0A2P4XPC6_9STRA (STAM like protein Hse1 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XPC6_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.050e-6
Identity = 26/48 (54.17%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 LTEVIRILRKKLGSSNTMVLSVALTLAETLVKNCHDPVHREIASERFM 144
            L E IR L+ +LG +++ V+ +ALTL E++VKNC D VH+EIA+E FM
Sbjct:   82 LKESIRYLKLRLGDASSRVVILALTLTESVVKNCGDLVHQEIATESFM 129
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BLAST of mRNA_Ecto-sp8_S_contig93461.30809.1 vs. uniprot
Match: M4BWH7_HYAAE (VHS domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BWH7_HYAAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.360e-6
Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 LTEVIRILRKKLGSSNTMVLSVALTLAETLVKNCHDPVHREIASERFM 144
            L E IR L+ +LG S++ V+ +ALTL E++VKNC D VH+EIA+E FM
Sbjct:   82 LKESIRYLKLRLGDSSSRVVILALTLTESIVKNCGDLVHQEIATEPFM 129
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BLAST of mRNA_Ecto-sp8_S_contig93461.30809.1 vs. uniprot
Match: A0A6N2LSK8_SALVM (VHS domain-containing protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2LSK8_SALVM)

HSP 1 Score: 50.4 bits (119), Expect = 1.960e-6
Identity = 22/52 (42.31%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    7 EVIRILRKKLGSSNTMVLSVALTLAETLVKNCHDPVHREIASERFMAAVAKI 162
            +V++++++KLGS N+ V  +ALTL ET++KNC D VH  +A +  +  + KI
Sbjct:   31 DVVKVIKRKLGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKDLLHEMVKI 82
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BLAST of mRNA_Ecto-sp8_S_contig93461.30809.1 vs. uniprot
Match: A0A662X9B6_9STRA (VHS domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X9B6_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 2.530e-6
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 LTEVIRILRKKLGSSNTMVLSVALTLAETLVKNCHDPVHREIASERFM 144
            L E IR LR +LG  ++ V+ +ALTL E+LVKNC D VH EIA+E FM
Sbjct:   82 LKESIRYLRLRLGDPSSHVIILALTLTESLVKNCGDLVHLEIATEAFM 129
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig93461.30809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J7V5_9PHAE2.100e-2398.15VHS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YSD0_9STRA2.080e-758.70VHS domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A0P1AM73_PLAHL3.880e-750.00VHS domain-containing protein n=1 Tax=Plasmopara h... [more]
A0A4D9CTC8_9STRA5.310e-748.08VHS domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A3R7IPJ5_9STRA9.890e-750.00VHS domain-containing protein n=4 Tax=Phytophthora... [more]
A0A3M6VSQ9_9STRA9.910e-756.25VHS domain-containing protein n=2 Tax=Peronospora ... [more]
A0A2P4XPC6_9STRA1.050e-654.17STAM like protein Hse1 (Fragment) n=1 Tax=Phytopht... [more]
M4BWH7_HYAAE1.360e-656.25VHS domain-containing protein n=1 Tax=Hyaloperonos... [more]
A0A6N2LSK8_SALVM1.960e-642.31VHS domain-containing protein n=1 Tax=Salix vimina... [more]
A0A662X9B6_9STRA2.530e-658.33VHS domain-containing protein n=2 Tax=Nothophytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig93461contigEcto-sp8_S_contig93461:444..605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score102.1
Seed ortholog evalue8.6e-20
Seed eggNOG ortholog2880.D7FWE4
Preferred nameGGA2
Model size162
KEGG koko:K12346,ko:K12404,ko:K20524
KEGG TC2.A.55.1
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0005856,GO:0005938,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006896,GO:0006897,GO:0006996,GO:0007010,GO:0007015,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009057,GO:0009987,GO:0012505,GO:0015031,GO:0015629,GO:0015833,GO:0016043,GO:0016192,GO:0016197,GO:0016482,GO:0019538,GO:0019941,GO:0030029,GO:0030036,GO:0030163,GO:0030479,GO:0030863,GO:0030864,GO:0031984,GO:0032182,GO:0032509,GO:0032511,GO:0033036,GO:0033365,GO:0034613,GO:0035091,GO:0042886,GO:0043130,GO:0043162,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043328,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051603,GO:0051641,GO:0051649,GO:0061645,GO:0070273,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0097435,GO:0098657,GO:0098791,GO:0099568,GO:1901564,GO:1901565,GO:1901575,GO:1901981
Exons1
EggNOG free text desc.intracellular protein transport
EggNOG OGsKOG1087@1,KOG1087@2759
Cds size162
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145289.5202615-CDS-Ecto-sp8_S_contig93461:443..6051681145289.5202615-CDS-Ecto-sp8_S_contig93461:443..605Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig93461 444..605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig93461.30809.1prot_Ecto-sp8_S_contig93461.30809.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig93461 444..605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig93461.30809.1

>prot_Ecto-sp8_S_contig93461.30809.1 ID=prot_Ecto-sp8_S_contig93461.30809.1|Name=mRNA_Ecto-sp8_S_contig93461.30809.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=54bp
LTEVIRILRKKLGSSNTMVLSVALTLAETLVKNCHDPVHREIASERFMAA
VAKI
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mRNA from alignment at Ecto-sp8_S_contig93461:444..605+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig93461.30809.1 ID=mRNA_Ecto-sp8_S_contig93461.30809.1|Name=mRNA_Ecto-sp8_S_contig93461.30809.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=162bp|location=Sequence derived from alignment at Ecto-sp8_S_contig93461:444..605+ (Ectocarpus species8 EcLAC_412)
CTGACCGAAGTGATTCGAATCCTGCGCAAGAAGCTAGGGTCAAGCAACAC
GATGGTCTTGTCCGTGGCGCTAACGCTAGCCGAGACGCTGGTGAAGAACT
GTCACGACCCAGTCCACAGAGAGATCGCGTCGGAGAGGTTCATGGCCGCT
GTGGCCAAAATT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig93461:444..605+

>mRNA_Ecto-sp8_S_contig93461.30809.1 ID=mRNA_Ecto-sp8_S_contig93461.30809.1|Name=mRNA_Ecto-sp8_S_contig93461.30809.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp8_S_contig93461:444..605+ (Ectocarpus species8 EcLAC_412)
CTGACCGAAGTGATTCGAATCCTGCGCAAGAAGCTAGGGTCAAGCAACAC
GATGGTCTTGTCCGTGGCGCTAACGCTAGCCGAGACGCTGGTGAAGAACT
GTCACGACCCAGTCCACAGAGAGATCGCGTCGGAGAGGTTCATGGCCGCT
GTGGCCAAAATT
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