mRNA_Ecto-sp8_S_contig9344.30806.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9344.30806.1
Unique NamemRNA_Ecto-sp8_S_contig9344.30806.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig9344.30806.1 vs. uniprot
Match: D7FS50_ECTSI (L-type lectin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS50_ECTSI)

HSP 1 Score: 601 bits (1550), Expect = 3.230e-215
Identity = 291/293 (99.32%), Postives = 293/293 (100.00%), Query Frame = 1
Query:    1 MLHAERRNAFSSAILALLVAARSATAILHKHLSFVPPFLDVDHFGKRTVGFEWDVTGEAKVMRNFVRLTPDRQSKRGAVWSVDAIGNTVFSSVLEFRLSGKGDRFFGDGLALWVVEPERRHDLYDMHYGGYYDDDLGAGWGGGMKDLRADLPSGDFHGFVETFKGLGVIVDTYRNEEYYNAHKDFTILYNTGNMTRDEMVEASVGCNGQVRFYENRADFDPGSVSSRVKVEVAGNVLTVKVDPKNSKTWEDCAQLELPKELGEEWAKGGHLGLTASTGQLSDNHDVIRLETYV 879
            MLHAERRNAFSSAILALLVAARSATAILHKHLSFVPPFLDVDHFGKRTVGFEWDVTGEAKVMRNFVRLTPDRQSKRGAVWSVDAIGNTVFSSVLEFRLSGKGDRFFGDGLALWVVEPERRHDLYDMHYGGYYDDDLGAGWGGGMKDLRADLPSGDFHGFVETFKGLGVIVDTYRNEEYYNAHKDFTI+YNTGNMTRDEMVEASVGCNGQVRFYENRADFDPGSVSSRVKVEVAGNVLTVKVDPKNSKTWEDCAQL+LPKELGEEWAKGGHLGLTASTGQLSDNHDVIRLETYV
Sbjct:    1 MLHAERRNAFSSAILALLVAARSATAILHKHLSFVPPFLDVDHFGKRTVGFEWDVTGEAKVMRNFVRLTPDRQSKRGAVWSVDAIGNTVFSSVLEFRLSGKGDRFFGDGLALWVVEPERRHDLYDMHYGGYYDDDLGAGWGGGMKDLRADLPSGDFHGFVETFKGLGVIVDTYRNEEYYNAHKDFTIVYNTGNMTRDEMVEASVGCNGQVRFYENRADFDPGSVSSRVKVEVAGNVLTVKVDPKNSKTWEDCAQLDLPKELGEEWAKGGHLGLTASTGQLSDNHDVIRLETYV 293          
BLAST of mRNA_Ecto-sp8_S_contig9344.30806.1 vs. uniprot
Match: A0A6H5JL82_9PHAE (L-type lectin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL82_9PHAE)

HSP 1 Score: 463 bits (1191), Expect = 1.000e-160
Identity = 221/225 (98.22%), Postives = 222/225 (98.67%), Query Frame = 1
Query:  205 TPDRQSKRGAVWSVDAIGNTVFSSVLEFRLSGKGDRFFGDGLALWVVEPERRHDLYDMHYGGYYDDDLGAGWGGGMKDLRADLPSGDFHGFVETFKGLGVIVDTYRNEEYYNAHKDFTILYNTGNMTRDEMVEASVGCNGQVRFYENRADFDPGSVSSRVKVEVAGNVLTVKVDPKNSKTWEDCAQLELPKELGEEWAKGGHLGLTASTGQLSDNHDVIRLETYV 879
            TP  QSKRGAVWSVDAIGNTVFSSVLEFRLSGKGDRFFGDGLALWVVEPERRHDLYDMHYGGYYDDDLGAGWGGGMKDLRADLPSGDFHGFVETFKGLGVIVDTYRNEEYYNAHKDFTI+YNTGNMTRDEMVEASVGCNGQVRFYENRADFDPGSVSSRVKVEVAGNVLTVKVDPKNSKTWEDCAQLELPKELGEEWAKG HLGLTASTGQLSDNHDVIRLETYV
Sbjct:   61 TPVNQSKRGAVWSVDAIGNTVFSSVLEFRLSGKGDRFFGDGLALWVVEPERRHDLYDMHYGGYYDDDLGAGWGGGMKDLRADLPSGDFHGFVETFKGLGVIVDTYRNEEYYNAHKDFTIVYNTGNMTRDEMVEASVGCNGQVRFYENRADFDPGSVSSRVKVEVAGNVLTVKVDPKNSKTWEDCAQLELPKELGEEWAKGSHLGLTASTGQLSDNHDVIRLETYV 285          
BLAST of mRNA_Ecto-sp8_S_contig9344.30806.1 vs. uniprot
Match: A0A835YLV0_9STRA (L-type lectin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLV0_9STRA)

HSP 1 Score: 239 bits (611), Expect = 6.190e-69
Identity = 129/289 (44.64%), Postives = 173/289 (59.86%), Query Frame = 1
Query:   25 AFSSAILALLVAARSATAILHKHLSFVPPFLDVDHFGKRTVGFEWDVTGEAKVMRNFVRLTPDRQSKRGAVWSVDAIGNTVFSSVLEFRLSGKGDRFFGDGLALWVVEPERRHDLY---DMHYGGYYDDDLGAGWGGGMKDLRADLPSGDFHGFVETFKGLGVIVDTYRNEEYYNAHKDFTILYNTGNMTRDE-MVEASVGCNGQVRFYENRADFDPGSVSSRVKVEVAGNVLTVKVDPKNSKTWEDCAQLELPKE-LGEEWAKGGHLGLTASTGQLSDNHDVIRLETY 876
            A  + + A +V A +  A     +SF PPF   D  G R +   W   G  KV +NFVRLTPDR SK+G+ WS   IG T  + ++EFR+SGKG R FGDGLA+W+ +P R HD     D ++G     D  AG    +     + P GDFH F   FKG+GVI DTY N +  N HKD T++ N  N T    ++E S GC   VR++E R DF  G VSS+ K+ VA N LTV VDPKN+  W++C +++LP + L   W    H+G+TASTGQL+DNHD++R++ Y
Sbjct:    6 ALGAIVAAAVVGAPAVVADKLSAVSFAPPFEQHDSTGARIIAPGWVTDGVTKVAKNFVRLTPDRASKKGSAWSKSPIGKTEATVIVEFRISGKGRRLFGDGLAVWLAQPYRTHDAAWDDDFYFGDQAYGDQAAG--NNVYHAWNEWPLGDFHAFEPDFKGIGVIFDTYVNADLPN-HKDVTVVINDRNTTDTHVLLENSHGCMSLVRWFEGRDDFHAGKVSSKAKITVANNELTVLVDPKNTGAWQECTKVQLPTDKLEAGWLSSAHIGVTASTGQLADNHDLLRVDVY 291          
BLAST of mRNA_Ecto-sp8_S_contig9344.30806.1 vs. uniprot
Match: A0A7S2B8C4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B8C4_9STRA)

HSP 1 Score: 225 bits (573), Expect = 3.050e-67
Identity = 119/281 (42.35%), Postives = 170/281 (60.50%), Query Frame = 1
Query:   34 SAILALLVAARSATAILHKHLSFVPPFLDVDHFGKRTVGFEWDVTGEAKVMRNFVRLTPDRQSKRGAVWSVDAIGNTVFSSVLEFRLSGKGDRFFGDGLALWVVEPERRHDLYDMHYGGYYDDDLGAGWGGGMKDLRADLPSGDFHGFVETFKGLGVIVDTYRNEEYYNAHKDFTILYNTGNMTRDEMVEASVGCNGQVRFYENRADFDPGSVSSRVKVEVAGNVLTVKVDPKNSKTWEDCAQLELPKELGEEWAKGGHLGLTASTGQLSDNHDVIRLETY 876
            +A  A L+A  S +A   +  SF PP+ DVD  G R +  +W   G A V ++FVRLTPDRQSK+GAVWS  ++G   FS++L+FR+SG+G +FFGDG+ALWV++                               +A    GD HG VE F G GVI DT++N E  + H+D +++ N G  + + M++   GC+  +R++E+RADF   S+S R KV V G  L V++D KN   ++DCA ++LP  +  +WAK  H+G+TASTGQL+DNHDVI L T+
Sbjct:   26 AATAAFLLALASTSADKLEQHSFEPPYTDVDPSGNRLLSKDWKNGGVASVSQSFVRLTPDRQSKKGAVWSRKSLGTDTFSTILKFRISGQGKKFFGDGMALWVMQ-------------------------------QAYFVEGDLHGSVERFTGFGVIFDTFKNTESLSRHRDVSVIVNDGESSTELMMDKLEGCDASIRYHEDRADFSVESMS-RAKVIVTGKRLVVQIDGKNDGQFKDCAVVDLPFAM--DWAKSAHIGVTASTGQLADNHDVISLTTF 272          
BLAST of mRNA_Ecto-sp8_S_contig9344.30806.1 vs. uniprot
Match: A0A7S2RYF1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYF1_9STRA)

HSP 1 Score: 216 bits (550), Expect = 1.240e-63
Identity = 123/290 (42.41%), Postives = 167/290 (57.59%), Query Frame = 1
Query:   16 RRNAFSSAILALL--VAARSATAILHKHLSFVPPFLDVDHFGKRTVGFEWDVTGEAKVMRNFVRLTPDRQSKRGAVWSVDAIGNTVFSSVLEFRLSGKGDRFFGDGLALWVVEPERRHDLYDMHYGGYYDDDLGAGWGGGMKDLRADLPSGDFHGFVETFKGLGVIVDTYRNEEYYNAHKDFTILYNTGNMTRDEMVEASVGCNGQVRFYENRADFDPGSVSSRVKVEVA-GNVLTVKVDPKNSKTWEDCAQLELPKELGEEWAKGGHLGLTASTGQLSDNHDVIRLETY 876
            R  A +  + A L  VA     A L +H +F PP+  VD  G++ V  EW   G A V  NF+RLTPDRQSK+GA+WS  ++G   FS  L+FR+SG+G +FFGDG+ALWV++                               +A    GDFHG VE F G GVI DT++N E  + H+D +++YN G  T + M+E   GC+  +R++E R DF   S +SR KV V  G  +TV VDP N  T+  C Q ELP  L + WA+  H+G++ASTGQL+DNHDV+ L T+
Sbjct:   36 RSPALAGVVFAALASVARLGWAAKLEQH-TFQPPYSAVDPSGRKIVSREWKSGGVATVNSNFIRLTPDRQSKKGALWSRKSLGTDNFSMTLKFRISGQGKKFFGDGMALWVMQ-------------------------------QAYYVEGDFHGSVERFTGFGVIFDTFKNTETLSYHRDVSLVYNDGEKTTEVMLENKEGCDASIRYHEERGDFSVES-ASRAKVIVENGRQITVLVDPSNDGTFTRCIQAELP--LDQNWARQAHVGVSASTGQLADNHDVLELVTF 290          
BLAST of mRNA_Ecto-sp8_S_contig9344.30806.1 vs. uniprot
Match: A0A7R9U5N4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5N4_9STRA)

HSP 1 Score: 213 bits (543), Expect = 5.150e-63
Identity = 116/279 (41.58%), Postives = 152/279 (54.48%), Query Frame = 1
Query:   40 ILALLVAARSATAILHKHLSFVPPFLDVDHFGKRTVGFEWDVTGEAKVMRNFVRLTPDRQSKRGAVWSVDAIGNTVFSSVLEFRLSGKGDRFFGDGLALWVVEPERRHDLYDMHYGGYYDDDLGAGWGGGMKDLRADLPSGDFHGFVETFKGLGVIVDTYRNEEYYNAHKDFTILYNTGNMTRDEMVEASVGCNGQVRFYENRADFDPGSVSSRVKVEVAGNVLTVKVDPKNSKTWEDCAQLELPKELGEEWAKGGHLGLTASTGQLSDNHDVIRLETY 876
            +LAL        A L + LSF  PF   +  G R V   + V G A V  NFVRLTPDRQSKRGA+WS   I    FS+ L FR+SG G +FFGDG+ALW+    R +                                GD HG    F G+G++ DT+RN E  + H+D  +L N G  T D+M E   GC+  VR +E RADFD  S ++R KVE+ G  + V+VD K    WE+C +  LP  + E W K  H+G+TASTGQL+DNHDV+ L+++
Sbjct:    8 LLALSAGGFLVRANLVQELSFAAPFSSFESDGSRRVSPHFRVYGHAVVNENFVRLTPDRQSKRGALWSRMEIATQSFSTTLRFRISGSGKKFFGDGIALWITHNTRYNP-------------------------------GDLHGVNPKFVGVGIVFDTFRNTEALDKHRDVALLVNDGTKTVDDMYEVVQGCDAAVRVWEQRADFDV-SKAARAKVEIVGREVRVQVDEKEDGNWEECIRTTLPDTIPEAWLKSAHVGVTASTGQLADNHDVLSLQSF 254          
BLAST of mRNA_Ecto-sp8_S_contig9344.30806.1 vs. uniprot
Match: A0A7S2D3Y1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D3Y1_9STRA)

HSP 1 Score: 209 bits (533), Expect = 1.760e-61
Identity = 113/280 (40.36%), Postives = 159/280 (56.79%), Query Frame = 1
Query:   40 ILALLVAARSATAILHKHLSFVPPFLDVDHFGKRTVGFEWDVTGEAKVMRNFVRLTPDRQSKRGAVWSVDAIGNTVFSSVLEFRLSGKGDRFFGDGLALWVVEPERRHDLYDMHYGGYYDDDLGAGWGGGMKDLRADLPSGDFHGFVETFKGLGVIVDTYRNEEYYNAHKDFTILYNTGNMTRDEMVEASVGCNGQVRFYENRADFDPGSVSSRVKVEVAGNV-LTVKVDPKNSKTWEDCAQLELPKELGEEWAKGGHLGLTASTGQLSDNHDVIRLETY 876
            +L LL +   A  +    LSF  PF  VD  G R    +W   G   V ++F+RLTPDRQSK+GA+WS  A+G   FSSV +FR+SG+G  FFGDG+ALW ++                               +A    GD HG VE FKG G+I DT++N E  + H+D +I+ N G  T + M++   GC+  +R++E RADF     +SR+KV++   V L + VD +N   +E+CA++ LP    ++W    H+G+TASTGQL+DNHDVI L TY
Sbjct:   11 VLGLLASPLEADRV--DELSFGAPFDYVDSSGTRLPSSQWKNGGVTDVSKSFIRLTPDRQSKKGAIWSRKAVGVDTFSSVFKFRISGQGKNFFGDGMALWFIQ-------------------------------QAYYVEGDLHGSVERFKGFGIIFDTFKNTETLSYHRDISIVVNDGEKTTEMMMDKVEGCDASIRYHEARADFSVVDSASRIKVQIENGVDLVLTVDGQNDGDFEECARVTLP--FAQDWLAKAHIGVTASTGQLADNHDVISLSTY 255          
BLAST of mRNA_Ecto-sp8_S_contig9344.30806.1 vs. uniprot
Match: A0A662WN48_9STRA (L-type lectin-like domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WN48_9STRA)

HSP 1 Score: 198 bits (504), Expect = 6.650e-59
Identity = 112/282 (39.72%), Postives = 154/282 (54.61%), Query Frame = 1
Query:   34 SAILALLVAARSATAILHKHLSFVPPFLDVDHFGKRTVGFEWDVTGEAKVMRNFVRLTPDRQSKRGAVWSVDAIGNTVFSSVLEFRLSGKGDRFFGDGLALWVVEPERRHDLYDMHYGGYYDDDLGAGWGGGMKDLRADLPSGDFHGFVETFKGLGVIVDTYRNEEYYNAHKDFTILYNTGNMTRDEM-VEASVGCNGQVRFYENRADFDPGSVSSRVKVEVAGNVLTVKVDPKNSKTWEDCAQLELPKELGEEWAKGGHLGLTASTGQLSDNHDVIRLETY 876
            SA +ALL  A  A A   + +SF PPF  VD  G+R V   W   G A V ++FVRLT DRQSKRG +W    +G    S++L FR+SG+G R+FGDG+ LW                             G K     +     HGF + +KG+GV++DT+ N E+   HKD +I  N G+   ++M  E  +GCN  VR++E  A+FDP    SR+KV++    L V+VD   S  W  C ++ LP    E+W K   +G+TASTG L+DNHD+IRL+ Y
Sbjct:   12 SACIALL--AYRAAAEKMEGVSFKPPFETVDSEGRRVVNDTWSHGGNADVKKHFVRLTTDRQSKRGHLWQKSPVGRDELSAILTFRVSGQGKRWFGDGIGLWFT---------------------------GQKVYTPGVN----HGFTDKYKGVGVVIDTFNNPEHKGGHKDVSIFVNDGDKNYEQMYAEKRMGCNAAVRYHEQSANFDPVHSISRIKVKIDKTRLVVEVDEHASGLWVACHEMTLP--FSEDWLKTATIGITASTGALADNHDIIRLDAY 258          
BLAST of mRNA_Ecto-sp8_S_contig9344.30806.1 vs. uniprot
Match: K3WDP7_GLOUD (L-type lectin-like domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WDP7_GLOUD)

HSP 1 Score: 201 bits (512), Expect = 1.860e-58
Identity = 109/283 (38.52%), Postives = 161/283 (56.89%), Query Frame = 1
Query:   31 SSAILALLVAARSATAILHKHLSFVPPFLDVDHFGKRTVGFEWDVTGEAKVMRNFVRLTPDRQSKRGAVWSVDAIGNTVFSSVLEFRLSGKGDRFFGDGLALWVVEPERRHDLYDMHYGGYYDDDLGAGWGGGMKDLRADLPSGDFHGFVETFKGLGVIVDTYRNEEYYNAHKDFTILYNTGNMTRDEMV-EASVGCNGQVRFYENRADFDPGSVSSRVKVEVAGNVLTVKVDPKNSKTWEDCAQLELPKELGEEWAKGGHLGLTASTGQLSDNHDVIRLETY 876
            ++A  AL     SA A+   HL+F  P+  V   GKR +  E++V G   V +NFVRLTPDRQSKRG++WS   + +  F SV+ FR+ G+G ++FGDG+ +W+            H G Y                     +GD HGF + + G+G+I+DT++N E+   HKD T+  N G  T D +  E  +GC+   R++ N A FDP   SSR++++V GN LT+++DPKN   W  C Q  LP    ++W +   LG+TASTG L+DNHD+I + ++
Sbjct:   11 AAAACALHATGVSAEAL--NHLTFKEPYDKVGLDGKRQLSDEFEVGGSTDVKKNFVRLTPDRQSKRGSIWSRRVVDSEKFVSVVTFRIHGQGKKWFGDGIGIWLT-----------HEGRYV--------------------NGDNHGFTDQYYGVGIILDTFKNVEHRGGHKDVTVQINDGKKTLDMLNDETKIGCDAAFRYHSNSAAFDPVYSSSRLRIKVDGNKLTLEIDPKNEGKWSQCYQGTLP--FSQDWLRRATLGITASTGALADNHDIISVRSF 258          
BLAST of mRNA_Ecto-sp8_S_contig9344.30806.1 vs. uniprot
Match: A0A812USU1_SYMMI (LMAN2L protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812USU1_SYMMI)

HSP 1 Score: 195 bits (495), Expect = 5.550e-58
Identity = 105/244 (43.03%), Postives = 140/244 (57.38%), Query Frame = 1
Query:  145 VGFEWDVTGEAKVMRNFVRLTPDRQSKRGAVWSVDAIGNTVFSSVLEFRLSGKGDRFFGDGLALWVVEPERRHDLYDMHYGGYYDDDLGAGWGGGMKDLRADLPSGDFHGFVETFKGLGVIVDTYRNEEYYNAHKDFTILYNTGNMTRDEMVEASVGCNGQVRFYENRADFDPGSVSSRVKVEVAGNVLTVKVDPKNSKTWEDCAQLELPKELGEEWAKGGHLGLTASTGQLSDNHDVIRLETY 876
            VG  W  +G A V  NF RLTPDRQSK+GA+WS  A+G T F  VL+FR+SG+   FFGDG+ALW+ +       Y+                            GD HG  E F GLGVI DT+RN E  +AH+D T+L N G  T + M E   GCN   RF+  RADF     ++R +V ++G  ++V +DP NS  W DC +++ P  L  +W K  ++G+TASTGQL+DNHDVI L ++
Sbjct:    2 VGKFWRTSGHAVVNSNFARLTPDRQSKKGALWSRKALGVTSFFCVLKFRISGQAKNFFGDGIALWITQ----QSFYNP---------------------------GDLHGSQEKFVGLGVIFDTFRNTENIHAHRDVTLLINDGEKTWEMMTEDIRGCNANFRFHAERADFSVTD-AARARVLISGESISVSIDPTNSGQWTDCVKVDNPG-LPNDWLKSAYVGITASTGQLADNHDVISLLSF 212          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9344.30806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS50_ECTSI3.230e-21599.32L-type lectin-like domain-containing protein n=1 T... [more]
A0A6H5JL82_9PHAE1.000e-16098.22L-type lectin-like domain-containing protein n=1 T... [more]
A0A835YLV0_9STRA6.190e-6944.64L-type lectin-like domain-containing protein n=1 T... [more]
A0A7S2B8C4_9STRA3.050e-6742.35Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2RYF1_9STRA1.240e-6342.41Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9U5N4_9STRA5.150e-6341.58Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2D3Y1_9STRA1.760e-6140.36Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A662WN48_9STRA6.650e-5939.72L-type lectin-like domain-containing protein (Frag... [more]
K3WDP7_GLOUD1.860e-5838.52L-type lectin-like domain-containing protein n=1 T... [more]
A0A812USU1_SYMMI5.550e-5843.03LMAN2L protein (Fragment) n=1 Tax=Symbiodinium mic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9344contigEcto-sp8_S_contig9344:2..6080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score603.2
Seed ortholog evalue6.4e-170
Seed eggNOG ortholog2880.D7FS50
Model size879
KEGG koko:K10080,ko:K10082
KEGG Pathwayko04141,map04141
Hectar predicted targeting categorysignal peptide
GOsGO:0000139,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030134,GO:0030135,GO:0030246,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791
Exons8
EggNOG free text desc.carbohydrate binding
EggNOG OGsKOG3839@1,KOG3839@2759
Cds size879
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04091,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9344.30806.1prot_Ecto-sp8_S_contig9344.30806.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9344 2..6080 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145289.1852734-CDS-Ecto-sp8_S_contig9344:1..1181681145289.1852734-CDS-Ecto-sp8_S_contig9344:1..118Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9344 2..118 -
1681145289.2046392-CDS-Ecto-sp8_S_contig9344:1279..13921681145289.2046392-CDS-Ecto-sp8_S_contig9344:1279..1392Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9344 1280..1392 -
1681145289.2229023-CDS-Ecto-sp8_S_contig9344:1877..19451681145289.2229023-CDS-Ecto-sp8_S_contig9344:1877..1945Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9344 1878..1945 -
1681145289.2423549-CDS-Ecto-sp8_S_contig9344:2132..22201681145289.2423549-CDS-Ecto-sp8_S_contig9344:2132..2220Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9344 2133..2220 -
1681145289.2612245-CDS-Ecto-sp8_S_contig9344:2918..29901681145289.2612245-CDS-Ecto-sp8_S_contig9344:2918..2990Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9344 2919..2990 -
1681145289.2742238-CDS-Ecto-sp8_S_contig9344:3798..38891681145289.2742238-CDS-Ecto-sp8_S_contig9344:3798..3889Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9344 3799..3889 -
1681145289.2873359-CDS-Ecto-sp8_S_contig9344:4713..48241681145289.2873359-CDS-Ecto-sp8_S_contig9344:4713..4824Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9344 4714..4824 -
1681145289.2997444-CDS-Ecto-sp8_S_contig9344:5861..60801681145289.2997444-CDS-Ecto-sp8_S_contig9344:5861..6080Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9344 5862..6080 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9344.30806.1

>prot_Ecto-sp8_S_contig9344.30806.1 ID=prot_Ecto-sp8_S_contig9344.30806.1|Name=mRNA_Ecto-sp8_S_contig9344.30806.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=293bp
MLHAERRNAFSSAILALLVAARSATAILHKHLSFVPPFLDVDHFGKRTVG
FEWDVTGEAKVMRNFVRLTPDRQSKRGAVWSVDAIGNTVFSSVLEFRLSG
KGDRFFGDGLALWVVEPERRHDLYDMHYGGYYDDDLGAGWGGGMKDLRAD
LPSGDFHGFVETFKGLGVIVDTYRNEEYYNAHKDFTILYNTGNMTRDEMV
EASVGCNGQVRFYENRADFDPGSVSSRVKVEVAGNVLTVKVDPKNSKTWE
DCAQLELPKELGEEWAKGGHLGLTASTGQLSDNHDVIRLETYV
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mRNA from alignment at Ecto-sp8_S_contig9344:2..6080-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9344.30806.1 ID=mRNA_Ecto-sp8_S_contig9344.30806.1|Name=mRNA_Ecto-sp8_S_contig9344.30806.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=6079bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9344:2..6080- (Ectocarpus species8 EcLAC_412)
ATGCTCCACGCAGAGCGCAGAAACGCGTTCTCTTCCGCAATCCTCGCGCT GCTGGTGGCCGCCAGGAGCGCGACGGCCATCTTGCACAAGCACCTCTCCT TCGTGCCCCCGTTCTTGGACGTGGATCACTTCGGCAAGCGGACGGTAGGG TTCGAGTGGGACGTGACGGGAGAGGCCAAGGTCATGAGAAACTTCGTTCG TCTCACTCCGGATAGACAGGTGAGAGAGTGACAGACAGACAGACAGACTC TTAGGGTGGGACCAGGCGGCCATGATTTTCTGTTGGCGTACTGATTGCTT GTCGGTCAAACTATGTACAGCAGCAGCAGTAGTTGGCTCACACTACGTAC AAAGGCAGAGTTCTTGCGGAAAGATGGAAAGATGCGAATCATAGGGGGGG CTCTTCGGGTTAAACGTTGATTGAATGTTCCTGATTTTCATGTGTCGTAC ATATGCATAGTCTAGAAGGCCAACGACCAATGACCCTCGAGCCGCGAGAG AGAGAGAGAGAGAGGGGCCCGGTGTGGCAAGGGAAGCATTTGTACGCCAG TTCATGAGAGAGGCAGAATTGGTTTTTGCGAACAGACCGCCACCCAGGCT ACCCCCTGCGACTGCTGGTGGTTTAGCGGGACTCTCTGGTTGATTGTGCT TGCTTATGGCGGCGAGGATAACCTGTGTGTGCCTGCTTCTTGCGCTTGCC CAAGTTACTGGAGATTCGGTAGCCGCCGGTACGTGCGCGGCCTCAGCTCG TCGTCGTGTCCATAGAAATGCATGTCATATGCTAGCATGGACCATTGCCT AACCTGCGCAACCGACAGCAGCGGCAGCAGCAGCAGCAGCAGCAGCTATG TACGCTCGGGGGACACCAATGGCCGCACCTCTGGCAGCCTATTGGCCAAG AGAGAACATGGCCTCGCACAAACACCGGTTACATCTCTTTGCGTCATGCA TGGGGTATGCCTGCGATCGTTCTGCCATCACACACCTCGATTCGAGTATC TACGCCTTTCTCTTTTCAGGCAGCTCGACAGAGCCTGAGGTTTGCGGTTG GCTCACGAGCGAGTTGGTACTGCTGTCGTCCTACCTGTTAGCCTACACCG ATGACAAACGAGAGGGAAAAAGACCCCAAAGTTGTCCAGCTTGTGAGCGT CCCAAAGATCAGCACCACCACGCCACGAGATGAGTGTTAACCCCACCCCC CAACCCGTCCACCCTCCTGGTGTCCTCCTCTCTCTTCTTGCTACTGCTGT TATCAGAGTAAGAGGGGCGCGGTGTGGTCGGTGGACGCTATCGGCAACAC GGTATTCTCGTCCGTCTTGGAGTTCCGCTTGTCCGGCAAGGGTGACAGAT TCTTCGGCGACGGCCTGGTGAGCTCAAGCACAAAACGTTCGTTGGATACA GCAGTAGCCGCCCGCACACGGCGCATGTAGAGCGTGCCAGGAACACTTGA ACAGATCACGACCTCGTCGTCGGGAACGTCTAGACTATTTGTTGACCGAG GCTGGGTTCATACATGTAGTTGTGCTAGAATGGCCTCTAGATATAGGTTT CAGTGAGATTCTTAACTCAAAAGCTGCTCTCTAAGTTCTTAGATTTTAGT TTTTCGAGGCTGTATCATTTTCTTTTAACTGCCATGGTCTTGCGTGCGGG CGCCAACTGTACAGCGTTGTCGAATGGAAGTTTTAACGTACCGAGATGAA CTGTTGCTGTGTGACCCCCGGTAGGCCGTAGAGGGGGGAAGGGAGCGAAG GAGCGAGCAGTTGAGAACGTCATCACGTCATCTTAGCTGATGATGTGGGA AAAGTTGTTTCCGAAGTGACATCGAACCGCTTTGTTGTCGAGAAACATAT TTCCTCTCTTTGAAGCATTTTTCTTGTTGAGAAAAGTCCGGCATGCCCCT CTGACTGCCATGTCATACCTATCAATCGGACATCTTGATTTAATTTCAGT GGAGCCCCCCCCCCCTCCTGCAAATATGGATGACGGCACGCTACTGGTTC GTCCTTGTGAAACGTAGCCTGGGCCGGCAAAAACCCGGCATATCGCTCCG TTCCGGCATTGTAGGGATCCTAGGTCAATGGTCTAACGACTGTAAGTGCG GCATCCGTTTACATGAGCACCCGCCCCGCGCGCCCCGTTCTTGCATTGCA AATCCTTTCTACCGTTTGTTTCGGTTGGGGACCCGTTTTAGGCGTTGTGG GTGGTGGAGCCGGAGCGTCGGCACGACCTGTACGACATGCACTACGGAGG CTACTACGACGATGATCTGGGAGCAGGCTGGGGTAAGGGAGAGTACGGAA GGTGGAGGAATATTGGATGGGGCTGGGGTTGTACACGAGTATGCTCCAGC GTGCACGCGAGGGACGGGAGAAGGGCGCTGGTGTGGGCATGGTCGTGGTG AACCGCGAGGGTTTGCCGTGAGGGGGGGGGGGGGGGTGTGGGTGGGGGGT GGTGCGGGGGGGTCGTGGGGCGTGGGGGGGGGGGGGGGGGGCGCCATGAG TTGTCTGTTTCGGGTCCATATTATGGCGTGTGTTGCAGTCGAATCACATG AACCGCGTTGTCATGTGTGCGTGACCAAATTTGTAAATGTTCCTTAGCAC AAGAGATCGAGCAAGCGAGCGTGGCCTGACTCTCAACGGAGCCCCGGAAC ACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCAACAAA CAAGGAAAACAACATATAACGGGGTTGCAAACGACAAAAAAAACCCACCC CCCCCCCCCCCGCCCCTTNNNNNNNNNNGGCTCGCCTCCCAACGGGGCCC CGGAACCCCCCCCCCCCCCCCCCTCCCCCCCCAGCCCGCCTGCGGGCGTA CAAAGAAGATCAATCGTTAATCGTTAAGGTGAACCAGATGCCACAGAGCC CCCTAACCGCTGCAACGCGACTTTTTCCTGCTTTCGTGAGTGTTTTGTTT GTCTGTGTGTATTCATTTGCATCCACCGCTGACCAACGGACGGACGACAG TCTCAGTGCGGCTAAGAACGAAACTAATAGTACGTGTGTTTCCCCCTCTT ATTGTGCGTGCTCGATCTCCTGCCCTGGTCGGCCAATCAGGCGGAGGCAT GAAGGATCTTAGAGCAGATCTCCCTTCCGGAGACTTTCACGGGTTCGTCG AAACCTTCAAGGGTGAGTGGATTCTGAAAGTATGCCCTGGCAAAGGGCTC CATCCTTATCCTTGCCCCTCTCCCCGTCTTCAAAACTTGACGCCGTCCGT TTCCATGTAGTTTGCGTCCGTTTGAAGGGGTTGCTTTTTTTTTTTCGGGT GTTGTTTTTTTCATGCTGGAAGTGCCCCTTGTCCTAAATAGACGGATTGG AGGCTTGGTTGGAATAGACCCCCAATAAGGATGTTGAGTGTTAGCCTCGC GTTTGTTTCAGGGGACTGCATTTCCAGGGGGGCGTTTTTGCCCGCCCAAA AGGTTGTTGTTGTTGTTGATGATGATGTTGTTGTTGTTGGTTGTTGATGT TGTTGTTGCTGCTGCTGTTGCTGAATAGCGCCGCCGTCTTCAAGTGCTGA GCGTGATCATGCCATGTGCTGCCACCACTGCCCTCGTGTTCGGTCCTATG ATTGTAACCCGTTGTCACCGTCACCGGATGTGCCGTTGTTTTTATTGGCC GCTGCTGTTGTTGCTGTTGGCTTCTGCTTTTGCTGCTGTTGGCTGCTGCT GTTGCTGCTGTTAGCTGCCTGTTGGCCGCTGCTGTTGCTGCTGTTAGCTG CTGCTTTTCGGTCTGTCGGAGGGGAAGGTCTGGGAGTGATTTGTCGACGT CGTCGTTGAACTGACGTTGTCGCTCACCGCTGCTGTTGCTGCTGTGTGGT CTGTTGGCAGGTCTGGGGGTGATTGTCGACACCTACCGGAACGAGGAATA TTACAACGCCCACAAAGACTTCACCATCCTGTACAACACCGGGAACATGT GCGTATCCCCCTCCCCTCCGCGGGGGCACGAAATTGCCGCCTTTTATGGG AACACGCATAAACTGCTGCTGCTGTTGTTGTTGTTGTCGAAGGTCGTGCC GTTGTTGGTGTTGGTGTTGGTGTTGGTGTTGTTCCTGCTGGTGTTGAAAC TGTCGATGTTGGTGTTTGTTTGCTGTCGTGTCCAGGACGCGGGACGAGAT GGTGGAGGCATCTGTGGGCTGCAACGGTCAGGTCCGCTTCTACGAGAACA GGGGTAAGAGCTCTTAATTTTAGCACTGTAAAAAAACAAATCCATTACGG ACTATAGTAGGATCTGGTCAAATATAGCAACGGGTAACACCTGTACGTCG TAGTACCGTCTACTACCGAGGTGACGTGACATGACATGACATGACATGAC ATGACATAGGATACCACACGCCCTGGACCTATTTTCACAGCTCGGTTACT GTGCAGCACTGCATGTGACGACAGCAGTCGTGGTCGCGACAATGGCGGCA TTGGAACCGTCCCACCGAGACTTTGTCCCATTAGCCGTAATTTCATTTTG GCATCCGCTTTTTTCGTCTTGGAGTAATCGGGCTTTTTAGGATCAGTCCA CGGGTTTTTTATATCTTACGCAACCTTCGGCACTATGTTCCCGAGTGCAC CTGCCATCTTCTTGGCGACTTTCCTTTTCTCGCGCACATGCTTTTCACAA TTTATCGTATGTTCTCTCTTTTTCTTTTCTTTTTCCAGCCGACTTCGACC CGGGATCCGTATCTTCCCGGGTTAAAGTGGAAGTTGCCGGGAACGTTCTT ACGGTCAAGGTAGACCCCAAGAACTCCAAGACCTGGGAGGACTGCGCCCA GGTATAACAACCCTCCATCAGTTGTTGTTGTGTTGAGTAGAAATCTGGTT TAATCTCTGTCTTTTGGCTTTTGTGGTTCTTGTTCTTGTTGATATCAGCA TGTTAATGTGTCTTGCCCAAAACCAAAGATTATTGCCCAAAAACCGTAAC AACAGGGTATACCCTGGTCGAAAATTGGCACAAGCATGAATCTTAACCAT GCTGGATGTCTCGCGAGCTAAGCGTAACCCGTATCTAGCACATTGTCTAC CTCACATAACTGCTACTACGTTGCTTGCTAGATAGATGTCGGTTTCTTTC CAAACGGAATTGTGCTGGCATTTGCCAGCCATCGTTTATTTAGAGCGGGA GGAGTTGATGGTTGGTGTAGTTTTGCAGGGGGCGGAAACTCCGTTGTGAT TTATTTTCCGCCCAGCTACCATGGTTGTTTTTGGGCGGGGCGGGAGAGTC GCTGTTTGGTAACCCATGGTTGGACGGGAGAAGGGTTGGGAAAAGATTCT TGCGGAGGAAATGGTTGATGAAATTGTCTCGTTTCCCGTCAGGTCAGGGT GAATTTCCGAAACAAGGGTACAATTCTGTAGATCAAAAAACAAAAACTAG ACCATGGCACGCAAATCGACCCGGCGCAGTTACGGTATTCTCAAATGGTA CGTATTCGCCTTGTCTGGAGTCAAAATTTCCATTTAACAACGTATTTCAC GATGGTAGATTTGTTTTTTGTACCACAGCAATTTTGCTTTCAGGACTGTA CCCCGCCAGCCGGGCCAAGCCAGTAGCAGATCGAGCCGCACGCCGTCGCG CACCATGCCCGCTTGCAGCCATGAACACCAAGAGCTGTATCAACAAACTA GCAACCAAGGTTAGGAGCGCATCAATACCTAATCAAGGTACGGCCTTCGT CTACCAACACAAAGGAGCTGAGTATTATACCAACAACGACGTGGGCATGT GTTTGAATGTTCCAACCACACCTCTACCAAACCCCAACCGCAGCTCGACC TCCCCAACCAAGCGAAATCCAGACAAACCTCTACCAAACCCAACCGCAGC TCGACCTCCCCAACCAATCGAGATCCAACCAATTCTCTATCAAACCCCAA CCACAGCTCGACCTCCCCAACCAATCGAAATCCAACCACACCTCTACCAA ACCCAACCGCAGCTCGAGCTCCCCAAGGAGCTGGGCGAAGAGTGGGCAAA GGGAGGACACCTTGGTCTCACCGCTAGCACCGGGCAGCTATCGGACAATC ACGACGTTATCCGGCTGGAGACGTACGTA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9344:2..6080-

>mRNA_Ecto-sp8_S_contig9344.30806.1 ID=mRNA_Ecto-sp8_S_contig9344.30806.1|Name=mRNA_Ecto-sp8_S_contig9344.30806.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=879bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9344:2..6080- (Ectocarpus species8 EcLAC_412)
ATGCTCCACGCAGAGCGCAGAAACGCGTTCTCTTCCGCAATCCTCGCGCT
GCTGGTGGCCGCCAGGAGCGCGACGGCCATCTTGCACAAGCACCTCTCCT
TCGTGCCCCCGTTCTTGGACGTGGATCACTTCGGCAAGCGGACGGTAGGG
TTCGAGTGGGACGTGACGGGAGAGGCCAAGGTCATGAGAAACTTCGTTCG
TCTCACTCCGGATAGACAGAGTAAGAGGGGCGCGGTGTGGTCGGTGGACG
CTATCGGCAACACGGTATTCTCGTCCGTCTTGGAGTTCCGCTTGTCCGGC
AAGGGTGACAGATTCTTCGGCGACGGCCTGGCGTTGTGGGTGGTGGAGCC
GGAGCGTCGGCACGACCTGTACGACATGCACTACGGAGGCTACTACGACG
ATGATCTGGGAGCAGGCTGGGGCGGAGGCATGAAGGATCTTAGAGCAGAT
CTCCCTTCCGGAGACTTTCACGGGTTCGTCGAAACCTTCAAGGGTCTGGG
GGTGATTGTCGACACCTACCGGAACGAGGAATATTACAACGCCCACAAAG
ACTTCACCATCCTGTACAACACCGGGAACATGACGCGGGACGAGATGGTG
GAGGCATCTGTGGGCTGCAACGGTCAGGTCCGCTTCTACGAGAACAGGGC
CGACTTCGACCCGGGATCCGTATCTTCCCGGGTTAAAGTGGAAGTTGCCG
GGAACGTTCTTACGGTCAAGGTAGACCCCAAGAACTCCAAGACCTGGGAG
GACTGCGCCCAGCTCGAGCTCCCCAAGGAGCTGGGCGAAGAGTGGGCAAA
GGGAGGACACCTTGGTCTCACCGCTAGCACCGGGCAGCTATCGGACAATC
ACGACGTTATCCGGCTGGAGACGTACGTA
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