mRNA_Ecto-sp8_S_contig934.30802.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig934.30802.1
Unique NamemRNA_Ecto-sp8_S_contig934.30802.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig934.30802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig934contigEcto-sp8_S_contig934:6384..9859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size326
Hectar predicted targeting categoryother localisation
Exons2
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145288.6231701-CDS-Ecto-sp8_S_contig934:6383..64491681145288.6231701-CDS-Ecto-sp8_S_contig934:6383..6449Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig934 6384..6449 +
1681145288.6399229-CDS-Ecto-sp8_S_contig934:9599..98571681145288.6399229-CDS-Ecto-sp8_S_contig934:9599..9857Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig934 9600..9857 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig934.30802.1prot_Ecto-sp8_S_contig934.30802.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig934 6384..9857 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig934.30802.1

>prot_Ecto-sp8_S_contig934.30802.1 ID=prot_Ecto-sp8_S_contig934.30802.1|Name=mRNA_Ecto-sp8_S_contig934.30802.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=108bp
DRRIAAVPLFVHLADRAYRRRENLRDRHKTVATAAGNRSSYTPAALSTGG
GVHGSRLLFSACGSAPRTSSSFRRCVARPHTHRARRWYSFLAFFAGDRVA
GGLFGGVV
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mRNA from alignment at Ecto-sp8_S_contig934:6384..9859+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig934.30802.1 ID=mRNA_Ecto-sp8_S_contig934.30802.1|Name=mRNA_Ecto-sp8_S_contig934.30802.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3476bp|location=Sequence derived from alignment at Ecto-sp8_S_contig934:6384..9859+ (Ectocarpus species8 EcLAC_412)
GACAGACGCATCGCTGCAGTCCCTCTCTTTGTCCACTTGGCCGATCGAGC
GTACCGTCGTCGCGAGGTGAGTGCACCGTCTACTAATTTTCGAGATGAGG
TCGAGGAAGAAGATGCACGCTTGGCAGAAATCCCATCCTGATCTGTGTTC
TCCACACGGTGTATCAGTCGTTCCAAGACATGAAGCGAGCGACGCGATGT
GTGTCGCTCTCCGCAAAAGATGTTCCCAAACAGCAGCGGACTACAGGTTT
TGCACAGCAGGCAGTGTTGCCCCGAAAGACGCCGAGGAGAACCATCACGA
CGGGCCCCCGGTGTTTCGCTCACCTTGCCCCTCTACCTCACATCCATCGT
CACAATTTTCGTTCTTGTGTGAGAGGGATGTGCCGAAACATTGTGAGCGA
GGTCCGCGCGGCGGTATTTTGCCTTTTCCAGCAGAGAAAAGAACACCGCC
ATCAAAATCTCCTCCGTCTGCTGTCATCCGTTGATGGGAAAGAAGGAAAG
CCCTTGTAGAGAGGAGAGAATCCCGCCGCTGCGATACCATGCCGTACTCA
TCCGCGGTTCCTACCTGGGCAGTAAGTTACCCGAATCTGGAAGGTAGCGT
CGAGGTTAAGGGTGCAGTGTTGTTGGTGTTGAATGTTTCTTTCGGGGTGT
GTCTCTCTCTCTCCCTGCCGTTAGCATCGGTCGTTCGGCTCCCGTCAAGC
CATTCCATTCTCTCTCTCTCCCCCTACACCTTGAGAGGGCCGTCTGATTC
TCTGGGAACTCGTACACATGGCAAGCATGCCTGGCAGAGGGGTGGGTGCT
GCTGCCATAGCGGTTGCTGCGCCACCACCGCCGTTTGACTGTTTCTGGTC
GTCTGGCCTGAACGCCAAGACAACGAACGCTTTTGTTTCATTATTACTGG
TACAATACAGCATGTGCGTTTTCATTGAAAGTTCGCGGTCCTCCCCGCTG
TTCTACCCGTGAGGTATACACATACAGCTGTAGGATGGTGTGCATCGCGT
GCTACCTGCTACCAAGAGCTGTTTGTCTCCCACTGTACCCTACTCGAGAA
CGACAACAATGGCAGCATGCCAAACAGAGGTAGAGGCATTACCACATGGT
GTTGTGTAGATGTACAAGGCACACGCTTTCGCGCATGTTCAGCGAATTGG
CTCAAAATGTTTCCAGAAAACGTCTCGTCGGTTCAGGTTCTCGATGCAAC
CGTTAGTTGTTGCCAAGTGTCGTCACGTTTGCGTGATGGTGCAACGAACG
AGCCTGTTGTGAAACGCTACTATCAGGGAGATGTTTACCACTACTGACAG
CAGAAGTGTGTTGCTCGAGGGTAAGAAGAGGCACTGAGGTATGTCCTGTA
GGCAAGCCGACATTCATTCCACTTTATCTGGTCCGGTCGCCCCGCTGGCC
TAAGTAGGTGTGGTGGGTACAGCAGCATCAGTACCGGTTGTGGGCTCGAA
TCTCTCTCTCGTCCGGACTGCTGTAACTATTCGGTGGAAAGCGAGTACTT
ATCTATTTAATTCTTGGGTGGAAAACGAGTAGTCTATTTCGTTGATGAGT
TTTCACAGAAGTGAGAAGGGACTTGCAGTGTTATTAATAATCATGGCAAG
AATGGAAGGCGGGAGGGACTGTATGTACAACACTGTGAACTACAAAACCA
TATAGAGTCCTAGCGTTGCCCCCTACTGCTGTAGCCGAAATCAAACATTT
ATGGTCGATCAAGTTGTGGTGCACTAGAACAGATGGGCATGAAAACACAG
CATACCATGTGCATACTTGTATGAACTATCTTTGGTCGAGATGAGTTTTG
TTGCATTTTTCTGATGGAAGAAACCAAATCTTGGAAACTGAACGGATTGT
GTGCAGGAGGTACAGCATTGACATCACACAGAAGCAGTGCACCCACTCAA
GCCGGTACTCAGGGATGTTTGCCGAAGTCCTTGCTGTCAAGGTTCAGTGA
CGACGGCCGAAATTGGTACACGCCAGACTCGAGGGATATTCTGCCGCAGT
ACCATATGAGGTTATAGCGAGAAGGGCCTCCCCTTCTGCACAGACTCAAC
ATACAAGGTCCGAAGGACCCCAAATGTTTCGATTGCAATGCCAATGTTTT
GGAACAGTCGGCGGCATGTGTTTTTTTTTTTTGTACCGCGGGATGGGCTG
TGCATGCAGCATGCTGCAAGTTTGTTTCTGCAGTTGCACGCTGCATTGCT
ACAGGTAACTTGGGGATAGCCTAGCCAAGTAGAATGCGTGCGCACAGCGT
GACATGTGGGCCATGTGCTGCAAATTTCTGTTTTTGTTGTGGTGTTCCTG
TAGCTCCAACGGTGATGGCAACACACATACCTGTAGCACACGAGTACTGA
CGTAGAAACAGAGGTATGCTACATAGCATGCTTACGTTCGCATTGCACAG
CCATGACTCCGCTTGGAGGTATGGAATGGGGGGTGACACGCTGTAATTCT
TCAGTGGATGGTAGAGTGTGACGATCAGCAGGTGCAATTTTGTTTTTGTA
CCGTGAGGGCTCCAACGTTCGACTTTGTCCATACATAGATATTGAGGCTG
CTGTTTGTTGCTGCCGTCCGTCTGCCCCCCAGCCTCTTGTTTTCTTCGCC
GTTTCTGTTGTTTTGTGTTCGTGAATTGTTGCAACACACATGTTCCCGCC
GCTCGCAGTATCGCTCTCTCTCTCCCTCACGTGCAATCTTGTCGCCAGTG
TTACCGCGAGAAATGGTTGGAGCAAGCCTCTTTAGAGTGGAGGCGTATTC
CGTTCACCCACGAACATCAAAAATGCTCTCCGTTTTGTGTAGCGTGTGTG
GTTCTGTGATATACTCGGGTCTACTATTTACTGCTGAATCGTCAATCACC
ACTTTTTTTGGCCACTTGTGGCAACGGGTATGGCTTATGAGCGCGGTCGT
ATTAAATATCTCTACAACTGGCTTCGCTGCTTTTCAGCGGCCAACGCTAA
TCTTGTAGCTGCTTGTGTCTTAGCCCTTTCGCTGGTTCCCAAACCTGGCT
TTCCGAATTATTATAGCCGATATTTTCGCGTACGTAGGACGACCCTTCAC
AGGGCAGCAAGGAAAGCACGCAACTTCTAAAAAGCCCAATCGTTGCTATT
GCGCCTGCCCTTGCCGCCCCGCTCCCCTTCCCTCTCACCCCGCCTCTCTT
TTTTTGATCTTCTGTCGCGGTGCACCCGCTTGTCCTGCACGCACAACGCG
GCTTTTGTCTTACCAGAATTTGCGCGACAGACACAAGACTGTAGCAACAG
CCGCGGGGAACAGGAGCTCCTACACGCCGGCAGCGTTATCTACAGGCGGC
GGAGTCCACGGTTCCCGCTTACTATTCTCTGCCTGCGGGTCCGCACCCCG
GACCAGCTCATCTTTTCGCCGCTGTGTTGCTCGTCCTCATACGCACCGAG
CCCGTCGGTGGTATTCATTCCTGGCCTTCTTTGCGGGCGACAGGGTGGCC
GGGGGCTTGTTTGGCGGCGTCGTCGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig934:6384..9859+

>mRNA_Ecto-sp8_S_contig934.30802.1 ID=mRNA_Ecto-sp8_S_contig934.30802.1|Name=mRNA_Ecto-sp8_S_contig934.30802.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp8_S_contig934:6384..9859+ (Ectocarpus species8 EcLAC_412)
GACAGACGCATCGCTGCAGTCCCTCTCTTTGTCCACTTGGCCGATCGAGC
GTACCGTCGTCGCGAGAATTTGCGCGACAGACACAAGACTGTAGCAACAG
CCGCGGGGAACAGGAGCTCCTACACGCCGGCAGCGTTATCTACAGGCGGC
GGAGTCCACGGTTCCCGCTTACTATTCTCTGCCTGCGGGTCCGCACCCCG
GACCAGCTCATCTTTTCGCCGCTGTGTTGCTCGTCCTCATACGCACCGAG
CCCGTCGGTGGTATTCATTCCTGGCCTTCTTTGCGGGCGACAGGGTGGCC
GGGGGCTTGTTTGGCGGCGTCGTC
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