mRNA_Ecto-sp8_S_contig934.30800.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig934.30800.1
Unique NamemRNA_Ecto-sp8_S_contig934.30800.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig934.30800.1 vs. uniprot
Match: A0A6H5JSE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSE9_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 7.870e-51
Identity = 113/150 (75.33%), Postives = 116/150 (77.33%), Query Frame = -2 
Query:    3 ESTKPNGVAVAGAASSSPSKAAGAMPPPLPKTSAVDLPSSXXXXXXXXXXGELPSSTSDRKTAVQARSSEGARPGPEAGKETKRQAAEGEDKGKGKGAEEEAGEERCTTSPCPDHALPAARTFFDFEAVSGLEMRMLPEFFTGRSASKTP 452
            +STKPNGVAVAGAASSSPSKAAGAMPPPLPK+SAVDLPSS          GE PSSTSDRKTAV+ARSSEGARPGPEA KET                EE AGEER T S CPDHALP ARTFFDFEAVS LEMRMLPEFFTGRSASKTP
Sbjct:  441 KSTKPNGVAVAGAASSSPSKAAGAMPPPLPKSSAVDLPSSTSSLSSSGP-GESPSSTSDRKTAVKARSSEGARPGPEARKETXXXXXXXXXXXXXXXXEEGAGEERRTISQCPDHALPVARTFFDFEAVSDLEMRMLPEFFTGRSASKTP 589
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BLAST of mRNA_Ecto-sp8_S_contig934.30800.1 vs. uniprot
Match: D8LMT8_ECTSI (Internalin protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMT8_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 2.300e-37
Identity = 78/85 (91.76%), Postives = 79/85 (92.94%), Query Frame = -2 
Query:    3 ARSSEGARPGPEAGKETKRQAAEGEDKGKGKGAEEEAGEERCTTSPCPDHALPAARTFFDFEAVSGLEMRMLPEFFTGRSASKTP 257
            ARSSEGARPGPEAGKETKRQAAEGEDKGK   AEE AGEE+ TTSPCPDHALP ARTFFDFEAVSGLEMRMLPEFFTGRSASKTP
Sbjct:  387 ARSSEGARPGPEAGKETKRQAAEGEDKGKXXXAEEGAGEEKRTTSPCPDHALPVARTFFDFEAVSGLEMRMLPEFFTGRSASKTP 471
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig934.30800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSE9_9PHAE7.870e-5175.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMT8_ECTSI2.300e-3791.76Internalin protein n=1 Tax=Ectocarpus siliculosus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig934contigEcto-sp8_S_contig934:1221..1675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size456
Hectar predicted targeting categoryother localisation
Exons1
Cds size453
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145288.8279765-CDS-Ecto-sp8_S_contig934:1220..16731681145288.8279765-CDS-Ecto-sp8_S_contig934:1220..1673Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig934 1221..1673 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig934.30800.1prot_Ecto-sp8_S_contig934.30800.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig934 1221..1673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig934.30800.1

>prot_Ecto-sp8_S_contig934.30800.1 ID=prot_Ecto-sp8_S_contig934.30800.1|Name=mRNA_Ecto-sp8_S_contig934.30800.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=151bp
SGVLDALRPVKNSGSILISKPLTASKSKNVRAAGSAWSGHGLVVHLSSPA
SSSAPFPFPLSSPSAACLLVSFPASGPGLAPSLLRAWTAVFLSLVEEGNS
PAPAEGDEEEEEEGRSTADVFGRGGGMAPAALDGDDDAAPATATPFGFVD
S
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mRNA from alignment at Ecto-sp8_S_contig934:1221..1675+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig934.30800.1 ID=mRNA_Ecto-sp8_S_contig934.30800.1|Name=mRNA_Ecto-sp8_S_contig934.30800.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=455bp|location=Sequence derived from alignment at Ecto-sp8_S_contig934:1221..1675+ (Ectocarpus species8 EcLAC_412)
TCCGGCGTCTTGGACGCACTCCGGCCGGTGAAAAACTCCGGGAGCATCCT
CATCTCCAAGCCGCTCACGGCCTCAAAGTCAAAGAACGTCCGGGCCGCCG
GCAGCGCGTGGTCCGGACACGGGCTGGTGGTGCATCTCTCTTCTCCCGCC
TCTTCCTCCGCGCCCTTCCCCTTTCCCTTGTCTTCTCCCTCCGCAGCCTG
CCTCTTGGTCTCCTTCCCAGCTTCGGGTCCCGGCCTCGCTCCTTCGCTGC
TGCGCGCCTGGACAGCTGTTTTTCTGTCGCTGGTGGAGGAAGGCAATTCT
CCTGCGCCCGCTGAAGGAGACGAAGAGGAGGAAGAAGAAGGCAGATCGAC
CGCGGACGTTTTCGGCAGGGGCGGCGGCATGGCACCGGCAGCCTTGGATG
GCGACGACGATGCCGCACCCGCTACCGCCACGCCGTTCGGCTTTGTAGAT
TCACC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig934:1221..1675+

>mRNA_Ecto-sp8_S_contig934.30800.1 ID=mRNA_Ecto-sp8_S_contig934.30800.1|Name=mRNA_Ecto-sp8_S_contig934.30800.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=453bp|location=Sequence derived from alignment at Ecto-sp8_S_contig934:1221..1675+ (Ectocarpus species8 EcLAC_412)
TCCGGCGTCTTGGACGCACTCCGGCCGGTGAAAAACTCCGGGAGCATCCT
CATCTCCAAGCCGCTCACGGCCTCAAAGTCAAAGAACGTCCGGGCCGCCG
GCAGCGCGTGGTCCGGACACGGGCTGGTGGTGCATCTCTCTTCTCCCGCC
TCTTCCTCCGCGCCCTTCCCCTTTCCCTTGTCTTCTCCCTCCGCAGCCTG
CCTCTTGGTCTCCTTCCCAGCTTCGGGTCCCGGCCTCGCTCCTTCGCTGC
TGCGCGCCTGGACAGCTGTTTTTCTGTCGCTGGTGGAGGAAGGCAATTCT
CCTGCGCCCGCTGAAGGAGACGAAGAGGAGGAAGAAGAAGGCAGATCGAC
CGCGGACGTTTTCGGCAGGGGCGGCGGCATGGCACCGGCAGCCTTGGATG
GCGACGACGATGCCGCACCCGCTACCGCCACGCCGTTCGGCTTTGTAGAT
TCA
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