mRNA_Ecto-sp8_S_contig9291.30736.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig9291.30736.1 vs. uniprot
Match: A0A6H5K9Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Q8_9PHAE) HSP 1 Score: 441 bits (1135), Expect = 1.940e-152 Identity = 242/269 (89.96%), Postives = 250/269 (92.94%), Query Frame = 1
Query: 58 MMQRVVLLLLQVVPSAGLLVSWTAVRSRLSQKVQRSCTSVDSHTPGGGLSGDEPRDAMVSELLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSLKRLDPAEVPGQVAAAPAXXXXXXXXXXXXXXXXXXGAGQGAQHQQPERPLAVVAAKYYFNGDSNVVFRYRLYSFHACPPNTPGARGEAVMRLWRLLPHVEARLRANSYDLNSFSWSDDDNNQREPRRGSDDASSDRCSKEGRAGDDVVERIFGCEIYWGRHQAGGEDDKT 864
MMQRVVLLLLQVVPSAGLLVSWTA RSRLSQKVQRSCTSVDSHTPGGGLSGDEPRDAMVSELLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSLK+LDPAEVPGQVAA XXXXXXXXXXXXXXXXXX RPLAVVAAKYYFNGDSNVVFRYRLYSFHACPPNTPGARGEAVMRLWRLLPHVEARLRANSYDL SFSWSDDD+NQREP RGSD+AS+DRCSKEGR G+DVVER+FGCEIYWGRHQAGGED+K+
Sbjct: 1 MMQRVVLLLLQVVPSAGLLVSWTASRSRLSQKVQRSCTSVDSHTPGGGLSGDEPRDAMVSELLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSLKQLDPAEVPGQVAAXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXRPLAVVAAKYYFNGDSNVVFRYRLYSFHACPPNTPGARGEAVMRLWRLLPHVEARLRANSYDLTSFSWSDDDSNQREPSRGSDNASNDRCSKEGRTGNDVVERMFGCEIYWGRHQAGGEDEKS 268
BLAST of mRNA_Ecto-sp8_S_contig9291.30736.1 vs. uniprot
Match: D7G1T2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T2_ECTSI) HSP 1 Score: 257 bits (657), Expect = 1.940e-83 Identity = 152/177 (85.88%), Postives = 152/177 (85.88%), Query Frame = 1
Query: 58 MMQRVVLLLLQVVPSAGLLVSWTAVRSRLSQKVQRSCTSVDSHTPGGGLSGDEPRDAMVSELLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSLKRLDPAEVPGQVAAAPAXXXXXXXXXXXXXXXXXXGAGQGAQHQQPERPLAVVAAKYYFNGDSNVVFRYRLYSFHACP 588
MMQRVVLLLLQVVPSAGLLVSWTA RSRLSQKVQRSCTSVDSHTPGGGLSGDEPRDAMVSELLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSLKRLDPAEVP QVA XXXXXXXXXXXXXXXXXX AKYYFNGDSNVVFRYRLYSFHACP
Sbjct: 1 MMQRVVLLLLQVVPSAGLLVSWTAARSRLSQKVQRSCTSVDSHTPGGGLSGDEPRDAMVSELLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSLKRLDPAEVPEQVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKYYFNGDSNVVFRYRLYSFHACP 177
BLAST of mRNA_Ecto-sp8_S_contig9291.30736.1 vs. uniprot
Match: K0TER5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TER5_THAOC) HSP 1 Score: 76.6 bits (187), Expect = 3.330e-12 Identity = 52/147 (35.37%), Postives = 66/147 (44.90%), Query Frame = 1
Query: 241 LLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSLKRLDPAEVPGQVAAAPAXXXXXXXXXXXXXXXXXXGAGQGAQHQQPERPLAVVAAKYYFNGDSNVVFRYRLYSFHACPPNTPGARGEAV--MRLWRLLPHVEARLRANS 675
L FQG+FDNY+QVV DR+ G+TPG GGGHEHIHC+L P G + R + A +YFNG+ +FR+R Y A P + G AV M+L L P +E LR S
Sbjct: 80 LTSTFQGDFDNYNQVVLDRQHGLTPGAGGGHEHIHCTL--------------VPCPDF-------------------GDDAEGDTRRSRWILAAFYFNGNPQQIFRFRAYQLWA-PDHDGMDDGSAVVRMKLNTLSPILEQALRKRS 192
BLAST of mRNA_Ecto-sp8_S_contig9291.30736.1 vs. uniprot
Match: A0A7S3LBP4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LBP4_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 2.360e-11 Identity = 34/61 (55.74%), Postives = 39/61 (63.93%), Query Frame = 1
Query: 172 SVDSHTPGGGLSGDEPRDAMVSELLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSL 354
+V S T G D + ELL FQG+FDNY+QVV DRK G+ P GGGHEHIHCSL
Sbjct: 41 TVSSPTSSSHDEGSSKAD-LWEELLSRFQGDFDNYNQVVQDRKEGLLPREGGGHEHIHCSL 100
BLAST of mRNA_Ecto-sp8_S_contig9291.30736.1 vs. uniprot
Match: A0A7S2XQK4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQK4_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 5.670e-11 Identity = 57/181 (31.49%), Postives = 74/181 (40.88%), Query Frame = 1
Query: 139 RLSQKVQRSCTSVDSHTPGGGLSGDEPRDAMVSELLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSLKRLDPAEVPGQVAAAPAXXXXXXXXXXXXXXXXXXGAGQGAQHQQPE--RPLAVVAAKYYFNGDSNVVFRYRLYSFHACPPNTPGARGEAVMRLWRLLPHVEARLRANS 675
R S V S ++ GLS + LL FQG+FDNY QVV DR M P GGGHEHIHC+L + E Q+P+ + V A +YF+G +FR+R Y+ T A E M+L+ L P +E LRA S
Sbjct: 57 RRSTSVSFGMRSEEAENSKDGLS-------LWETLLGRFQGDFDNYRQVVRDRSNQMLPREGGGHEHIHCTLVPILSDE------------------------------------QEPDYNKMHYSVLAAFYFDGLPQRIFRFRRYAL-----TTTNASQEVQMKLYTLSPGLEQTLRAQS 189
BLAST of mRNA_Ecto-sp8_S_contig9291.30736.1 vs. uniprot
Match: A0A7S2PZJ6_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PZJ6_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 1.000e-10 Identity = 58/185 (31.35%), Postives = 78/185 (42.16%), Query Frame = 1
Query: 133 RSRLSQKVQRSCTSVDSHTPGGGLSGDEPRDAMVSELLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSLKRLDPAEVPGQVAAAPAXXXXXXXXXXXXXXXXXXGAGQGAQHQQPERPLAVVAAKYYFNGDSNVVFRYRLYSFHACPP---NTPGARGEAV-MRLWRLLPHVEARLRANS 675
RSR Q+ +V+ S D D LL FQG+FDNY QV+ DR + P GGGHEHIHC+L VP A Q Q+ ++AA +YFNG+ +FR+R+Y + N+ GE V M+L L +E +LR S
Sbjct: 29 RSRRIDIQQQKRINVECFQTSDATSDDS--DNYFHHLLSQFQGDFDNYHQVIRDRNHALAPADGGGHEHIHCTL-------VPCPHTAV-------------------------TQEQRQNNDQWILAA-FYFNGNPRQIFRFRMYKLISPQDDDSNSNNIDGEKVRMKLHTLSSELEQQLRQYS 178
BLAST of mRNA_Ecto-sp8_S_contig9291.30736.1 vs. uniprot
Match: A0A1E7FNR9_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FNR9_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 6.020e-10 Identity = 33/77 (42.86%), Postives = 42/77 (54.55%), Query Frame = 1
Query: 124 TAVRSRLSQKVQRSCTSVDSHTPGGGLSGDEPRDAMVSELLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSL 354
+AV + V C S S G G+ + + L + FQG+FDNY QVV DRK G+ P GGGHEH HC+L
Sbjct: 57 SAVTGTFQEMVVEPCESTSSVDGVGDGDGESSHEKVTKILSEWFQGDFDNYAQVVEDRKNGLLPREGGGHEHFHCTL 133
BLAST of mRNA_Ecto-sp8_S_contig9291.30736.1 vs. uniprot
Match: B7G7Q1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G7Q1_PHATC) HSP 1 Score: 67.4 bits (163), Expect = 3.190e-9 Identity = 36/79 (45.57%), Postives = 46/79 (58.23%), Query Frame = 1
Query: 121 WTAVRSRLSQKVQRSCTSVDSHTPGGGLSGDEPRDAMV-SELLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSL 354
W R+R + V+ + + + G L DA V LL FQG+FDNY+QV+ DRK G+ P GGGHEHIHCSL
Sbjct: 31 WAYPRARRNSFVEFASNTNSASDHVGNL------DASVWKALLDRFQGDFDNYNQVIHDRKKGLLPREGGGHEHIHCSL 103
BLAST of mRNA_Ecto-sp8_S_contig9291.30736.1 vs. uniprot
Match: A0A7S3DS98_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DS98_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 4.300e-9 Identity = 25/45 (55.56%), Postives = 36/45 (80.00%), Query Frame = 1
Query: 220 RDAMVSELLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSL 354
+D + +++L+ FQG+FDNY+QVV DR+ G P GGGHE+IHC+L
Sbjct: 92 KDQLWADMLERFQGDFDNYNQVVVDRENGKLPREGGGHENIHCTL 136
BLAST of mRNA_Ecto-sp8_S_contig9291.30736.1 vs. uniprot
Match: A0A1X6PC69_PORUM (Uncharacterized protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PC69_PORUM) HSP 1 Score: 63.2 bits (152), Expect = 1.370e-8 Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 1
Query: 232 VSELLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSLKRL 363
+ E L F G+FDN++QVV +R AG++P GGGHEHIHC+L L
Sbjct: 11 LGEFLAWFAGDFDNHEQVVEERAAGLSPREGGGHEHIHCTLTSL 54 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9291.30736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig9291.30736.1 >prot_Ecto-sp8_S_contig9291.30736.1 ID=prot_Ecto-sp8_S_contig9291.30736.1|Name=mRNA_Ecto-sp8_S_contig9291.30736.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=288bp MCDVRHSSSSISTRWLLNPMMQRVVLLLLQVVPSAGLLVSWTAVRSRLSQback to top mRNA from alignment at Ecto-sp8_S_contig9291:154..2906- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig9291.30736.1 ID=mRNA_Ecto-sp8_S_contig9291.30736.1|Name=mRNA_Ecto-sp8_S_contig9291.30736.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2753bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9291:154..2906- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9291:154..2906- >mRNA_Ecto-sp8_S_contig9291.30736.1 ID=mRNA_Ecto-sp8_S_contig9291.30736.1|Name=mRNA_Ecto-sp8_S_contig9291.30736.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=864bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9291:154..2906- (Ectocarpus species8 EcLAC_412)back to top |