mRNA_Ecto-sp8_S_contig92878.30730.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig92878.30730.1
Unique NamemRNA_Ecto-sp8_S_contig92878.30730.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig92878.30730.1 vs. uniprot
Match: D7FLV4_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV4_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.200e-18
Identity = 45/66 (68.18%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:    1 RDYSSDTKGRLDAGFARGTAARHDHCTAMKPDLCSKRAKQGMAPIGGRRCSHPGCMTRPSFGTAGS 198
            RDYSSD   R +AG ARGT ARH HCTAMKPD  S RAKQG+A I  + C HP CM RPSFG AGS
Sbjct:   95 RDYSSDKVDRHNAGVARGTTARHGHCTAMKPDFRSNRAKQGVAHIS-QTCGHPACMKRPSFGKAGS 159
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BLAST of mRNA_Ecto-sp8_S_contig92878.30730.1 vs. uniprot
Match: D7FSL8_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL8_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 7.000e-8
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   85 MKPDLCSKRAKQGMAPIGGRRCSHPGCMTRPSFGTAGSTK 204
            M+P+ CS+ AK GM  +  +RC HPGC  +PSFGTAGS K
Sbjct:    1 MRPEFCSQHAKPGMINVRKKRCCHPGCTKKPSFGTAGSKK 40
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig92878.30730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLV4_ECTSI1.200e-1868.18EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FSL8_ECTSI7.000e-857.50EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig92878contigEcto-sp8_S_contig92878:234..611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score91.3
Seed ortholog evalue3.5e-16
Seed eggNOG ortholog2880.D7FLV4
Model size378
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs29ZCP@1,2RXW0@2759
Cds size378
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145283.09359-CDS-Ecto-sp8_S_contig92878:233..6111681145283.09359-CDS-Ecto-sp8_S_contig92878:233..611Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig92878 234..611 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig92878.30730.1prot_Ecto-sp8_S_contig92878.30730.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig92878 234..611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig92878.30730.1

>prot_Ecto-sp8_S_contig92878.30730.1 ID=prot_Ecto-sp8_S_contig92878.30730.1|Name=mRNA_Ecto-sp8_S_contig92878.30730.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=126bp
RDYSSDTKGRLDAGFARGTAARHDHCTAMKPDLCSKRAKQGMAPIGGRRC
SHPGCMTRPSFGTAGSTKREFCAQHAKQGMIDRHHKRCGHPGCVTLPSYG
KNGSTKREYCSQHAKQGMVDLVHKRC
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mRNA from alignment at Ecto-sp8_S_contig92878:234..611+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig92878.30730.1 ID=mRNA_Ecto-sp8_S_contig92878.30730.1|Name=mRNA_Ecto-sp8_S_contig92878.30730.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=378bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92878:234..611+ (Ectocarpus species8 EcLAC_412)
CGCGACTATTCGTCGGACACAAAGGGCAGACTCGACGCCGGTTTTGCCAG
GGGCACAGCTGCACGGCACGACCATTGCACGGCCATGAAGCCAGATTTGT
GCTCGAAGCGCGCCAAACAGGGTATGGCGCCCATCGGCGGCAGGAGGTGC
AGCCACCCCGGGTGCATGACACGACCGTCGTTTGGTACTGCCGGCAGCAC
CAAGCGTGAGTTCTGCGCTCAGCATGCGAAGCAGGGTATGATTGACCGTC
ACCACAAGCGTTGCGGGCACCCAGGGTGCGTCACACTCCCGTCATATGGT
AAGAACGGCAGTACCAAGCGTGAGTACTGCTCTCAGCACGCGAAGCAGGG
TATGGTTGACCTTGTCCACAAGAGGTGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig92878:234..611+

>mRNA_Ecto-sp8_S_contig92878.30730.1 ID=mRNA_Ecto-sp8_S_contig92878.30730.1|Name=mRNA_Ecto-sp8_S_contig92878.30730.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92878:234..611+ (Ectocarpus species8 EcLAC_412)
CGCGACTATTCGTCGGACACAAAGGGCAGACTCGACGCCGGTTTTGCCAG
GGGCACAGCTGCACGGCACGACCATTGCACGGCCATGAAGCCAGATTTGT
GCTCGAAGCGCGCCAAACAGGGTATGGCGCCCATCGGCGGCAGGAGGTGC
AGCCACCCCGGGTGCATGACACGACCGTCGTTTGGTACTGCCGGCAGCAC
CAAGCGTGAGTTCTGCGCTCAGCATGCGAAGCAGGGTATGATTGACCGTC
ACCACAAGCGTTGCGGGCACCCAGGGTGCGTCACACTCCCGTCATATGGT
AAGAACGGCAGTACCAAGCGTGAGTACTGCTCTCAGCACGCGAAGCAGGG
TATGGTTGACCTTGTCCACAAGAGGTGC
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