mRNA_Ecto-sp8_S_contig92850.30725.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig92850.30725.1
Unique NamemRNA_Ecto-sp8_S_contig92850.30725.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig92850.30725.1 vs. uniprot
Match: D7FL09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL09_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 8.800e-63
Identity = 100/128 (78.12%), Postives = 109/128 (85.16%), Query Frame = 3 
Query:   33 GSLRTNQAEHQVPRAGRLVPPGFSTTTETDEVCAAATAMASLQAYFEYEVCLLCGIPSVTLMGTVEDWKLLREKIERVLEFEVLDNPEGKVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKVCVL 416
            G +R N    + P       PGFST+TETDEVCAAATAMASLQAYFE+ +CL C IPSVTLMGTVEDW+LLREKIER+LEFEVLDNPEGKVME+WVGYLRKVCDGFVESAEHPDSAATVDFW KV +L
Sbjct:   71 GQIRQNI---KSPELADWFRPGFSTSTETDEVCAAATAMASLQAYFEHTMCLACSIPSVTLMGTVEDWELLREKIERMLEFEVLDNPEGKVMEVWVGYLRKVCDGFVESAEHPDSAATVDFWAKVGML 195
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BLAST of mRNA_Ecto-sp8_S_contig92850.30725.1 vs. uniprot
Match: D7FL08_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D7FL08_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 1.750e-62
Identity = 103/125 (82.40%), Postives = 107/125 (85.60%), Query Frame = 3 
Query:   33 GSLRTNQAEHQVPRAGRLVPPGFSTTTETDEVCAAATAMASLQAYFEYEVCLLCGIPSVTLMGTVEDWKLLREKIERVLEFEVLDNPEGKVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKV 407
            G +R N    + P       PGFSTTTETDEVCAAA AMASLQAYFEY +CL CGIPSVTLMGTVEDWKLLREKIER+LEFEVL NPEGKVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKV
Sbjct:  174 GQIRQNI---KSPELADWFRPGFSTTTETDEVCAAAAAMASLQAYFEYTMCLACGIPSVTLMGTVEDWKLLREKIERMLEFEVLGNPEGKVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKV 295
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BLAST of mRNA_Ecto-sp8_S_contig92850.30725.1 vs. uniprot
Match: A0A6H5K056_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K056_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 3.590e-62
Identity = 98/105 (93.33%), Postives = 101/105 (96.19%), Query Frame = 3 
Query:   93 PGFSTTTETDEVCAAATAMASLQAYFEYEVCLLCGIPSVTLMGTVEDWKLLREKIERVLEFEVLDNPEGKVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKV 407
            PGFSTTTETDEVCAAATAMASLQ YF YE+CL CGIPSV LMGTVEDWKLLREKIER+LEFEVLDNPEGKVMELWVGYLRKVCDGFVESAEHP+SAATVDFWDKV
Sbjct:  155 PGFSTTTETDEVCAAATAMASLQEYFNYEMCLRCGIPSVALMGTVEDWKLLREKIERMLEFEVLDNPEGKVMELWVGYLRKVCDGFVESAEHPNSAATVDFWDKV 259
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BLAST of mRNA_Ecto-sp8_S_contig92850.30725.1 vs. uniprot
Match: A0A6H5KCJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ8_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 7.180e-62
Identity = 99/112 (88.39%), Postives = 103/112 (91.96%), Query Frame = 3 
Query:   72 RAGRLVPPGFSTTTETDEVCAAATAMASLQAYFEYEVCLLCGIPSVTLMGTVEDWKLLREKIERVLEFEVLDNPEGKVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKV 407
            ++  L  PGFSTTTETDEVCAAATAMASLQ  F YE+CL CGIPSV LMGTVEDWKLLREKIER+LEFEVLDNPEGKVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKV
Sbjct:  162 KSPELFLPGFSTTTETDEVCAAATAMASLQECFNYEMCLRCGIPSVALMGTVEDWKLLREKIERMLEFEVLDNPEGKVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKV 273
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BLAST of mRNA_Ecto-sp8_S_contig92850.30725.1 vs. uniprot
Match: D7G2F1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F1_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 2.130e-54
Identity = 85/115 (73.91%), Postives = 97/115 (84.35%), Query Frame = 3 
Query:   63 QVPRAGRLVPPGFSTTTETDEVCAAATAMASLQAYFEYEVCLLCGIPSVTLMGTVEDWKLLREKIERVLEFEVLDNPEGKVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKV 407
            + P       PGF+TTT+TDEV AAATAMASLQAYF YE+   CG+PSVTLMGTV+DWKLLR K+ER+L+FEV+DNPEG VME+WVGYLRKVCDGFVESAEHPDS  T+ FWDKV
Sbjct:  117 KTPELADWFKPGFTTTTDTDEVAAAATAMASLQAYFSYEIHAECGLPSVTLMGTVQDWKLLRAKVERLLDFEVIDNPEGDVMEVWVGYLRKVCDGFVESAEHPDSTETLQFWDKV 231
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BLAST of mRNA_Ecto-sp8_S_contig92850.30725.1 vs. uniprot
Match: D8LB67_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB67_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 1.090e-52
Identity = 86/105 (81.90%), Postives = 93/105 (88.57%), Query Frame = 3 
Query:   93 PGFSTTTETDEVCAAATAMASLQAYFEYEVCLLCGIPSVTLMGTVEDWKLLREKIERVLEFEVLDNPEGKVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKV 407
            PGFSTTTE DEVCAAATAMASLQAYFEY +   CGIPSVTLMGTV DWKLLREKIER+LEFEV  NP+GKVM+ WVGYLRKVCDGFVESAEHP S  T++FWD+V
Sbjct:   88 PGFSTTTEKDEVCAAATAMASLQAYFEYTMMYRCGIPSVTLMGTVGDWKLLREKIERLLEFEVDGNPQGKVMQTWVGYLRKVCDGFVESAEHPGSPETLEFWDRV 192
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BLAST of mRNA_Ecto-sp8_S_contig92850.30725.1 vs. uniprot
Match: D7G2F2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F2_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 7.230e-52
Identity = 85/115 (73.91%), Postives = 97/115 (84.35%), Query Frame = 3 
Query:   63 QVPRAGRLVPPGFSTTTETDEVCAAATAMASLQAYFEYEVCLLCGIPSVTLMGTVEDWKLLREKIERVLEFEVLDNPEGKVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKV 407
            + P       PGF+TTT+TDEV AAATAMASLQAYF YE+   CG+PSVTLMGTV+DWKLLR K+ER+L+FEV+DNPEG VME+WVGYLRKVCDGFVESAEHPDS  T+ FWDKV
Sbjct:  302 KTPELADWFKPGFTTTTDTDEVAAAATAMASLQAYFSYEIHAECGLPSVTLMGTVQDWKLLRAKVERLLDFEVIDNPEGDVMEVWVGYLRKVCDGFVESAEHPDSTETLQFWDKV 416
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BLAST of mRNA_Ecto-sp8_S_contig92850.30725.1 vs. uniprot
Match: A0A6H5KQX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX2_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 6.230e-50
Identity = 82/105 (78.10%), Postives = 92/105 (87.62%), Query Frame = 3 
Query:   93 PGFSTTTETDEVCAAATAMASLQAYFEYEVCLLCGIPSVTLMGTVEDWKLLREKIERVLEFEVLDNPEGKVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKV 407
            PGFSTTTE DEVCAAATAMASLQ YFE+ +   CGIPSVTL GTV DWKLLREK+ER+LEFEV  NPEG+VM++WVGYLRKVCDGFVESAEHP S  T++FWD+V
Sbjct:  106 PGFSTTTERDEVCAAATAMASLQNYFEFRMRRGCGIPSVTLRGTVRDWKLLREKVERLLEFEVDGNPEGEVMQIWVGYLRKVCDGFVESAEHPGSPETLEFWDRV 210
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BLAST of mRNA_Ecto-sp8_S_contig92850.30725.1 vs. uniprot
Match: D8LQ89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ89_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 4.220e-49
Identity = 83/106 (78.30%), Postives = 90/106 (84.91%), Query Frame = 3 
Query:   93 PGFSTTTETDEVCAAATAMASLQAYFEYEVCLLCGIPSVTLMGTVEDWKLLREKIERVLEFEVLDNPE-GKVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKV 407
            PGFSTTTE DEVCAAATAMASLQ YFEY     CGIPSVTL GTV DWKLLREKIER+LEFEV  NPE  KVM++WVGYLRKVCDGFV+SAEHP S  T++FWD+V
Sbjct:   88 PGFSTTTERDEVCAAATAMASLQGYFEYSFMCGCGIPSVTLRGTVGDWKLLREKIERLLEFEVDGNPEEDKVMQIWVGYLRKVCDGFVKSAEHPGSPETLEFWDRV 193
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BLAST of mRNA_Ecto-sp8_S_contig92850.30725.1 vs. uniprot
Match: A0A6H5L0H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H3_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 6.500e-48
Identity = 83/125 (66.40%), Postives = 97/125 (77.60%), Query Frame = 3 
Query:   33 GSLRTNQAEHQVPRAGRLVPPGFSTTTETDEVCAAATAMASLQAYFEYEVCLLCGIPSVTLMGTVEDWKLLREKIERVLEFEVLDNPEGKVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKV 407
            G +R N    ++P       PGF+TT  TDEV AAATA+ SLQAYF YE+ L CG+PSVTLMGTV+DWKLLR K+ER+L+FEV DNPE  VME+WVGYLR+VCDGFVESAEHPDS  T+  WDKV
Sbjct:  244 GKIRQNV---KMPELADWFKPGFTTTANTDEVAAAATAITSLQAYFSYEIHLECGLPSVTLMGTVQDWKLLRAKVERLLDFEVKDNPEEDVMEVWVGYLREVCDGFVESAEHPDSTETLQVWDKV 365
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig92850.30725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL09_ECTSI8.800e-6378.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FL08_ECTSI1.750e-6282.40Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K056_9PHAE3.590e-6293.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCJ8_9PHAE7.180e-6288.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2F1_ECTSI2.130e-5473.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LB67_ECTSI1.090e-5281.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2F2_ECTSI7.230e-5273.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQX2_9PHAE6.230e-5078.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ89_ECTSI4.220e-4978.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0H3_9PHAE6.500e-4866.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig92850contigEcto-sp8_S_contig92850:44..614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score177.6
Seed ortholog evalue3.4e-42
Seed eggNOG ortholog2880.D7FL08
Model size571
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Domain of unknown function (DUF4419)
EggNOG OGs29GQM@1,2RPX4@2759
Cds size342
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145282.8666573-UTR-Ecto-sp8_S_contig92850:43..1891681145282.8666573-UTR-Ecto-sp8_S_contig92850:43..189Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig92850 44..189 +
1681145282.890802-UTR-Ecto-sp8_S_contig92850:531..6141681145282.890802-UTR-Ecto-sp8_S_contig92850:531..614Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig92850 532..614 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145282.8795135-CDS-Ecto-sp8_S_contig92850:189..5311681145282.8795135-CDS-Ecto-sp8_S_contig92850:189..531Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig92850 190..531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig92850.30725.1prot_Ecto-sp8_S_contig92850.30725.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig92850 190..531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig92850.30725.1

>prot_Ecto-sp8_S_contig92850.30725.1 ID=prot_Ecto-sp8_S_contig92850.30725.1|Name=mRNA_Ecto-sp8_S_contig92850.30725.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=114bp
MASLQAYFEYEVCLLCGIPSVTLMGTVEDWKLLREKIERVLEFEVLDNPE
GKVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKVCVLLYSRKDAQHT
SLPSRNRHLHGCR*
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mRNA from alignment at Ecto-sp8_S_contig92850:44..614+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig92850.30725.1 ID=mRNA_Ecto-sp8_S_contig92850.30725.1|Name=mRNA_Ecto-sp8_S_contig92850.30725.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=571bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92850:44..614+ (Ectocarpus species8 EcLAC_412)
TTGGAAACGGCCGACTATGAAACACTGATCAAGGATCTCTTAGGACAAAT
CAGGCAGAACATCAAGTCCCCCGAGCTGGCAGACTGGTTCCGCCCGGGTT
CTCTACTACTACGGAGACGGACGAGGTGTGCGCGGCGGCAACAGCTATGG
CGAGCCTGCAGGCTTACTTCGAGTATGAAGTATGCCTGTTGTGCGGCATT
CCGTCGGTGACCCTGATGGGCACAGTCGAGGACTGGAAGCTGCTACGGGA
GAAGATCGAGCGTGTGCTTGAGTTCGAGGTGCTGGACAACCCGGAGGGCA
AGGTCATGGAGCTATGGGTGGGGTACCTAAGGAAGGTGTGCGACGGGTTC
GTGGAGTCGGCGGAGCACCCGGACAGCGCGGCGACGGTTGACTTCTGGGA
CAAGGTATGTGTGCTTCTATACAGTAGGAAGGATGCACAGCACACTTCAC
TGCCGTCAAGAAATCGCCATTTGCACGGCTGTAGGTGATTGTGCCTCGAT
GAAACAATTTGTCTAGTGGGTCAGAATGTTCCCTCCCCACCCCACCAGAG
ACCCTCAACTACTGTAGATGT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig92850:44..614+

>mRNA_Ecto-sp8_S_contig92850.30725.1 ID=mRNA_Ecto-sp8_S_contig92850.30725.1|Name=mRNA_Ecto-sp8_S_contig92850.30725.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92850:44..614+ (Ectocarpus species8 EcLAC_412)
ATGGCGAGCCTGCAGGCTTACTTCGAGTATGAAGTATGCCTGTTGTGCGG
CATTCCGTCGGTGACCCTGATGGGCACAGTCGAGGACTGGAAGCTGCTAC
GGGAGAAGATCGAGCGTGTGCTTGAGTTCGAGGTGCTGGACAACCCGGAG
GGCAAGGTCATGGAGCTATGGGTGGGGTACCTAAGGAAGGTGTGCGACGG
GTTCGTGGAGTCGGCGGAGCACCCGGACAGCGCGGCGACGGTTGACTTCT
GGGACAAGGTATGTGTGCTTCTATACAGTAGGAAGGATGCACAGCACACT
TCACTGCCGTCAAGAAATCGCCATTTGCACGGCTGTAGGTGA
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