mRNA_Ecto-sp8_S_contig9284.30722.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9284.30722.1
Unique NamemRNA_Ecto-sp8_S_contig9284.30722.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9284.30722.1 vs. uniprot
Match: A0A6H5K0I5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0I5_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 6.720e-37
Identity = 84/113 (74.34%), Postives = 88/113 (77.88%), Query Frame = 2 
Query:    2 LEEAMSPSPSPVRGDPGRWYVAPPPRPVPKTTGMPVTGDGKGDGSNRSSLSHDXXXXXXXXXXHQQHGGEVAGAPGESGTPRSXXXXXXXXXASAGAESIAAAPVVGLSPPTF 340
            L EA++PSPSPVRGDPGRW VA PPRPVP  TG  VTGDG GDGSN S LSHD          HQQHGGEVAGAPG S TPRS  XXXXXX ASAGAE+IAAAPVVGLSPP+F
Sbjct: 1928 LVEAITPSPSPVRGDPGRWDVAAPPRPVPNKTGKLVTGDGNGDGSNSSGLSHDDGGVGDGRYRHQQHGGEVAGAPGGSETPRSGGXXXXXXEASAGAENIAAAPVVGLSPPSF 2040
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BLAST of mRNA_Ecto-sp8_S_contig9284.30722.1 vs. uniprot
Match: D8LJM5_ECTSI (Kinesin family member 3A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJM5_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 2.950e-33
Identity = 72/83 (86.75%), Postives = 74/83 (89.16%), Query Frame = 2 
Query:    2 LEEAMSPSPSPVRGDPGRWYVAPPPRPVPKTTGMPVTGDGKGDGSNRSSLSHDXXXXXXXXXXHQQHGGEVAGAPGESGTPRS 250
            LEEAMSPSPSPVRGDPGRWYVAPPPRPVPK TGMPVTGD  GDGSN S LS+D XXXXXXX  HQQHGGE+A APGESGTPRS
Sbjct: 2585 LEEAMSPSPSPVRGDPGRWYVAPPPRPVPKKTGMPVTGDSNGDGSNSSGLSYDGXXXXXXXYLHQQHGGEIASAPGESGTPRS 2667
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9284.30722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0I5_9PHAE6.720e-3774.34Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LJM5_ECTSI2.950e-3386.75Kinesin family member 3A n=1 Tax=Ectocarpus silicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9284contigEcto-sp8_S_contig9284:6394..6736 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size344
Hectar predicted targeting categoryother localisation
Exons1
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145282.568702-CDS-Ecto-sp8_S_contig9284:6393..67351681145282.568702-CDS-Ecto-sp8_S_contig9284:6393..6735Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9284 6394..6735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9284.30722.1prot_Ecto-sp8_S_contig9284.30722.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9284 6394..6735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9284.30722.1

>prot_Ecto-sp8_S_contig9284.30722.1 ID=prot_Ecto-sp8_S_contig9284.30722.1|Name=mRNA_Ecto-sp8_S_contig9284.30722.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=114bp
PRGGHVAVAISGPRGPWPVVRRAPPPAGAENDRDAGHRRRQRRRQQSLQL
IARRRRRRRWQVSSPATRRRGRRCSRGERDPKKRGPPTPPPRGQRRCGKY
SSSPCRWIVSSNVS
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mRNA from alignment at Ecto-sp8_S_contig9284:6394..6736+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9284.30722.1 ID=mRNA_Ecto-sp8_S_contig9284.30722.1|Name=mRNA_Ecto-sp8_S_contig9284.30722.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=343bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9284:6394..6736+ (Ectocarpus species8 EcLAC_412)
CCTAGAGGAGGCCATGTCGCCGTCGCCATCTCCGGTCCGCGGGGACCCTG
GCCGGTGGTACGTCGCGCCCCCCCCCCGGCCGGTGCCGAAAACGACCGGG
ATGCCGGTCACCGGCGACGGCAAAGGCGACGGCAGCAATCGCTCCAGCTT
ATCGCACGACGACGGCGGCGGCGGCGGTGGCAGGTATCTTCACCAGCAAC
ACGGCGGCGAGGTCGCCGGTGCTCCCGGGGAGAGCGGGACCCCAAGAAGC
GGGGGCCGCCGACGCCGCCGCCGAGAGGCCAGCGCCGGTGCGGAAAGTAT
AGCAGCAGCCCCTGTCGTTGGATTGTCTCCTCCAACGTTTCCG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9284:6394..6736+

>mRNA_Ecto-sp8_S_contig9284.30722.1 ID=mRNA_Ecto-sp8_S_contig9284.30722.1|Name=mRNA_Ecto-sp8_S_contig9284.30722.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9284:6394..6736+ (Ectocarpus species8 EcLAC_412)
CCTAGAGGAGGCCATGTCGCCGTCGCCATCTCCGGTCCGCGGGGACCCTG
GCCGGTGGTACGTCGCGCCCCCCCCCCGGCCGGTGCCGAAAACGACCGGG
ATGCCGGTCACCGGCGACGGCAAAGGCGACGGCAGCAATCGCTCCAGCTT
ATCGCACGACGACGGCGGCGGCGGCGGTGGCAGGTATCTTCACCAGCAAC
ACGGCGGCGAGGTCGCCGGTGCTCCCGGGGAGAGCGGGACCCCAAGAAGC
GGGGGCCGCCGACGCCGCCGCCGAGAGGCCAGCGCCGGTGCGGAAAGTAT
AGCAGCAGCCCCTGTCGTTGGATTGTCTCCTCCAACGTTTCC
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