mRNA_Ecto-sp8_S_contig9267.30689.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9267.30689.1
Unique NamemRNA_Ecto-sp8_S_contig9267.30689.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9267.30689.1 vs. uniprot
Match: A0A6H5JA98_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA98_9PHAE)

HSP 1 Score: 695 bits (1794), Expect = 1.750e-247
Identity = 384/396 (96.97%), Postives = 389/396 (98.23%), Query Frame = 1 
Query:    1 MQVDQREALEDPRPLVGIMAHAYANPLINKRAPGAGSGTAAGDTNTDAXXXXXXXXXXXXXXXXXXXXXNELVIDALLAAEAETIGPEVRFLGLPRGTAAPFPAKKPSGGAWRGADGLRVVDSALPKGLVKRGWLHKHTRELPGSLVYLASVDVSAGAEDWADTEDEIVGDLRSVVANMAARDVKVLLVLVRAGAEAGQGGGREERDVADERALSLRRRAEIDARMVLMIGEPDLASHSNPPSVRRIAKAAKDLAVAHYASHISRIRRWEKVLVPTQRLYRPLLTRLYFKLGVLHEMQGLVDRSLLCYQEVSALLSDMVPRDGGRFQGGRGDADRGTLGGAFVRGGADPMEQIRGVAEVVHLRLVRNHLHRNMSVEGAIRQLRRHVSAFGRPGDAA 1188
            MQVDQREALEDPRPLVGIMAHAYANPLINKRAPGAGSGTAAGDT+   XXXXXXXXXXXXXXXXXXXX NELVIDALLAAEAETIGPEVRFLGLPRGTAA FPAKKPSGGAWRGADGLRVVDSALPKGLVKRGWLHKHTRELPGSLVYLASVDVSAGAEDWA+TEDEIVGDLRSVVANMAARDVKVLLVLVRAGAEAGQGGGREERDVADERALSLRRRAEIDARMVLMIGEPDLASHSNPPSVRRIAKAAKDLAVAHYASHISR+RRWEKVLVPTQRLYRPLLTRLYFKLGVLHEMQGLVDRSLLCYQEVSALLSDMVPRD GRFQGGRGDAD GTLGGAF+RGGADPMEQIRGVAEVVHLRLVRNHLHR+MSVEGAIRQLRRHVSAFGRPGDAA
Sbjct:    1 MQVDQREALEDPRPLVGIMAHAYANPLINKRAPGAGSGTAAGDTDXXXXXXXXXXXXXXXXXXXXXXXANELVIDALLAAEAETIGPEVRFLGLPRGTAAAFPAKKPSGGAWRGADGLRVVDSALPKGLVKRGWLHKHTRELPGSLVYLASVDVSAGAEDWANTEDEIVGDLRSVVANMAARDVKVLLVLVRAGAEAGQGGGREERDVADERALSLRRRAEIDARMVLMIGEPDLASHSNPPSVRRIAKAAKDLAVAHYASHISRLRRWEKVLVPTQRLYRPLLTRLYFKLGVLHEMQGLVDRSLLCYQEVSALLSDMVPRDEGRFQGGRGDADGGTLGGAFLRGGADPMEQIRGVAEVVHLRLVRNHLHRSMSVEGAIRQLRRHVSAFGRPGDAA 396
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9267.30689.1 vs. uniprot
Match: D7FX28_ECTSI (Foie-gras_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX28_ECTSI)

HSP 1 Score: 696 bits (1796), Expect = 2.190e-233
Identity = 384/396 (96.97%), Postives = 387/396 (97.73%), Query Frame = 1 
Query:    1 MQVDQREALEDPRPLVGIMAHAYANPLINKRAPGAGSGTAAGDTNTDAXXXXXXXXXXXXXXXXXXXXXNELVIDALLAAEAETIGPEVRFLGLPRGTAAPFPAKKPSGGAWRGADGLRVVDSALPKGLVKRGWLHKHTRELPGSLVYLASVDVSAGAEDWADTEDEIVGDLRSVVANMAARDVKVLLVLVRAGAEAGQGGGREERDVADERALSLRRRAEIDARMVLMIGEPDLASHSNPPSVRRIAKAAKDLAVAHYASHISRIRRWEKVLVPTQRLYRPLLTRLYFKLGVLHEMQGLVDRSLLCYQEVSALLSDMVPRDGGRFQGGRGDADRGTLGGAFVRGGADPMEQIRGVAEVVHLRLVRNHLHRNMSVEGAIRQLRRHVSAFGRPGDAA 1188
            MQVDQREALEDPRPLVGIMAHAYANPLINKRAPGAGSGTAAG+T    XXXXXXXXXXXXXXXXXXXX NELVIDALLAAEAETIGPEVRFLGLPRGTAA FPAKKPSGGAWRG DGLRVVDSALPKGLVKRGWLHKHTRELPGSLVYLASVDVSAGAEDWA TEDEIVGDLRSVVANMAARDVKVLLVLVRAGAEAGQGGGREERDVADERAL LRRRAEIDARMVLMIGEPDLASHSNPPSVRRIAKAAKDLAVAHYASHISR+RRWEKVLVPTQRLYRPLLTRLYFKLGVLHEMQGLVDRSLLCYQEVSALLSDMVPRDGGRFQGGRGDADRGTLGGAF+RGGADPMEQIRGVAEVVHLRLVRNHLHRNMSVEGAIRQLRRHVSAFGRPGDAA
Sbjct:    1 MQVDQREALEDPRPLVGIMAHAYANPLINKRAPGAGSGTAAGNTXXXXXXXXXXXXXXXXXXXXXXXXANELVIDALLAAEAETIGPEVRFLGLPRGTAAAFPAKKPSGGAWRGVDGLRVVDSALPKGLVKRGWLHKHTRELPGSLVYLASVDVSAGAEDWAATEDEIVGDLRSVVANMAARDVKVLLVLVRAGAEAGQGGGREERDVADERALGLRRRAEIDARMVLMIGEPDLASHSNPPSVRRIAKAAKDLAVAHYASHISRLRRWEKVLVPTQRLYRPLLTRLYFKLGVLHEMQGLVDRSLLCYQEVSALLSDMVPRDGGRFQGGRGDADRGTLGGAFLRGGADPMEQIRGVAEVVHLRLVRNHLHRNMSVEGAIRQLRRHVSAFGRPGDAA 396
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9267.30689.1 vs. uniprot
Match: A0A6H5J7Z5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Z5_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 5.990e-44
Identity = 99/141 (70.21%), Postives = 102/141 (72.34%), Query Frame = 3 
Query: 1539 IDKDKLLASLEGLEVREPLYLGESVRLVDPTNAERNLREECRGFLDLEETKTDRVGMARSLLVKALEHCPSGEDGFRRRRVLILGHLGEESFVAGR---------------------------------YDDALERLPPVW 1862
            IDKD+LL+SLEGLEVREPLYLGESVRLVDPTNA     EECRGFLDLEE+KTDRVGMARSLLVKALEHCPSGEDGFRRRRVLILGHLGEESFVAGR                                 YDDALERLP VW
Sbjct:   12 IDKDRLLSSLEGLEVREPLYLGESVRLVDPTNA-----EECRGFLDLEESKTDRVGMARSLLVKALEHCPSGEDGFRRRRVLILGHLGEESFVAGRQDGMGRNEMGWGXXXXXXXKGGGVGWEWGGVGGYDDALERLPLVW 147
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BLAST of mRNA_Ecto-sp8_S_contig9267.30689.1 vs. uniprot
Match: A0A418AIK4_9STRA (Foie-gras_1 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AIK4_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.590e-16
Identity = 90/318 (28.30%), Postives = 143/318 (44.97%), Query Frame = 1 
Query:  247 ETIGPEVRFLGLPRGTAAPFPAKKPSGGAWRGADGLRVVDSALP-KGLVKRGWLHKHTRELPGSLVYLASVDVSAGAEDWADTEDEIVGDLRSVVANMAARDVKVLLVLVR--------AGAEAGQGGGREERDVADERALSLRRRAEIDARMVLMIGEPDLASHSNPPSVRRIAKAAKDLAVAHYASHISRIRRWEKVLVPTQRLYRPLLTRLYFKLGVLHEMQGLVDRSLLCYQEVSALLSDMVPRDGGRFQGGRGDADRGTLGGAFVRGGADPMEQIRGVAEVVHLRLVRNHLHRNMSVEGAIRQLRRHVSAFGR 1173
            E   P V+F  L       FP KK                +A P KG+ K GWL KH   LP  ++   + +    + DWA  E  I  ++      ++ RDVK+LLVLV+        A   +           +D+R  SLR+RAE+DA+ V  +   D+ S ++P  ++ +  A +  AV +Y +   R+++ +K   PT+ +      R  FK+   +E +    + LL Y+     L  +            GDAD           GAD   Q+  VAE +H +LV + +  +  ++GA+ QL RH++AFGR
Sbjct:   37 EEFVPHVQFKSLSFDHRYVFPTKKDK--------------TASPSKGIWKAGWLKKHHEVLPSVVLLFYAFEPRLASRDWAIQETVIRDEVEDFRRTLSGRDVKILLVLVQLLDDATSSASPASTMSSSMVNLPSSDDRLQSLRKRAELDAKSVWFV--KDIVSRTHPTLIK-LEAAIRTNAVEYYKAQAKRVKKAKK---PTKLVG----IRHSFKVAHYYEFRNYTSKMLLHYEAAYKALLHLAAG---------GDADD----------GADLHRQLVAVAEYIHYKLVYHAIFSSHHLKGAVDQLHRHMTAFGR 311
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BLAST of mRNA_Ecto-sp8_S_contig9267.30689.1 vs. uniprot
Match: A0A485L0Z1_9STRA (Aste57867_14202 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L0Z1_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 6.260e-13
Identity = 69/274 (25.18%), Postives = 125/274 (45.62%), Query Frame = 1 
Query:  376 PKGLVKRGWLHKHTRELPGSLVYLASVDVSAGAEDWADTEDEIVGDLRSVVANMAARDVKVLLVLVRAGAEAGQGGGREERDV--------ADERALSLRRRAEIDARMVLMIGEPDLASHSNPPSVRRIAKAAKDLAVAHYASHISRIRRWEKVLVPTQRLYRPLLTRLYFKLGVLHEMQGLVDRSLLCYQEVSALLSDMVPRDGGRFQGGRGDADRGTLGGAFVRGGADPMEQIRGVAEVVHLRLVRNHLHRNMSVEGAIRQLRRHVSAFGR 1173
            P+G++K  WL KH   LP  L+   + +      DWA  E  I  ++  +  +++ R+ K+LLVLV+   +                    +D+R LSLR+RAE+DA+ V ++ +    + +N   ++ +  A +  A+ +Y +   R++R       T++ +R L  R  FK+   +E +    + L+ Y+     L  M P                               QI+ VAE +H +LV + +  N +++ A+ QL+RH++AF R
Sbjct:   69 PRGILKARWLKKHHEILPSVLLLFYAFEPRLATRDWAIQETVIRDEVEDLRRSLSGRECKILLVLVQLLDDGPSXXXXXXXXXXXXVNHANSDDRLLSLRKRAELDAKSVWLLKD---VARTNSQLIK-LELAIRTNAIEYYKAQAKRVKR-------TKKPHRALAVRHSFKIAHYYEFRKYTSKMLVHYEAAYKALLAMPPTSD---------------------------MQIKHVAEYIHFKLVYHAIFSNHNLKAAVDQLQRHMTAFAR 304
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9267.30689.1 vs. uniprot
Match: UPI0006D51644 (trafficking protein particle complex subunit 11 n=1 Tax=Halyomorpha halys TaxID=286706 RepID=UPI0006D51644)

HSP 1 Score: 66.6 bits (161), Expect = 1.170e-7
Identity = 54/205 (26.34%), Postives = 100/205 (48.78%), Query Frame = 1 
Query:  373 LPKGLVKRGWLHKHTRELPGSLVYLASVDVSAGAEDWADTEDEIVGDLRSVVANMAARDVKVLLVLVRAGAEAGQGGGREERDVADERALSLRRRAEIDARMVLMIGEPD--LASHSNPPSVRRIAKAAKDLAVAHYASHISRIRRWEKVLVPTQRLYRPLLTRLYFKLGVLHEMQGLVDRSLLCYQEVSALLSDMVPRDGGRFQ 981
            +PKG++KR W+HKH  ++P  +V    +D       W + + E V  ++S+ +++  R+ K+ LVL++  A    G    E  +  ERA +L + AE+  + + ++   +  L   SN      + KA  DLAV++Y   +  ++   + +  T   Y  L  R  FKLG   E++  ++ +   Y E  + L ++   D   F+
Sbjct:   78 IPKGILKRNWMHKHLTQIPAVIVIFYDLDWDD--PHWEEKKIECVSRVQSIRSSLEGRNCKICLVLIQKTAPLPSG----EDILGTERANALYQAAELGYKALFILPHTEHLLGYTSN------LEKAFYDLAVSYYQMEMRSVKSHRENMNKTTHQY--LYVRHQFKLGFFSELKQDLNSAHAYYSEAYSNLLEVRLSDTNEFE 268
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BLAST of mRNA_Ecto-sp8_S_contig9267.30689.1 vs. uniprot
Match: A0A8B8KNF2_ABRPR (trafficking protein particle complex subunit 11 n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8KNF2_ABRPR)

HSP 1 Score: 66.2 bits (160), Expect = 1.580e-7
Identity = 59/199 (29.65%), Postives = 99/199 (49.75%), Query Frame = 1 
Query:  367 SALPKGLVKRGWLHKHTRELPGSLVYL-ASVDVSAGAEDWADTEDEIVGDLRSVVANMAARDVKVLLVLVRAGAEAGQGGGREERDVADERALSLRRRAEIDARMVLMIGEPDLASHSNPPSVRRIAKAAKDLAVAHYASHISRIR-RWEKVLVPTQRLYRPLLTRLYFKLGVLHEMQGLVDRSLLCYQEVSALLSDMV 957
            S L +G+ KR WL KH  +LP  LV L  S  + A    W     ++   L S+   +  R++K  +V+V A A+          +++++R ++LR+RAE+DA+ VL++   D  S     S+ R++    +LA ++Y     RI+ R EK  V +  L    + R  FK+ V  E +     +L  Y+E    L ++V
Sbjct:   69 SPLVRGIFKRDWLTKHRTKLPSVLVALFPSHHLLADPSHWL----QLCSHLDSIKTVIRGRNIKFAVVVVHANAD----------EISEDRMIALRKRAELDAKYVLVLNPND--SSELKQSLDRLSSMFSELAGSYYRDEGRRIKQRIEKKNVNSVEL----IVRYCFKVAVYAEFRSDWAEALKFYEEAYHTLREIV 247
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9267.30689.1 vs. uniprot
Match: A0A7S1ZVI0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZVI0_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.760e-7
Identity = 63/265 (23.77%), Postives = 111/265 (41.89%), Query Frame = 1 
Query:  307 PAKKPSGGAWRGADGLRVVDSALPK------------------GLVKRGWLHKHTRELPGSLVYLASVDVSAGAEDWADTED---EIVGDLRSVVANMAARDVKVLLVLV-----RAGAEAGQGGGREERD-------------VADERALSLRRRAEIDARMVLMIGEP--------------------DLASHSNPPSVRRIAKAAKDLAVAHYASHISRIRRWEKVLVPTQRLYR----PLLTRLYFKLGVLHEMQGLVDRS 912
            P+K P+G A R    +R V S  P                   G++  GW+ KH   LP  L+ + S+D+S  +E     ++   E++  LRS +A+   R+ ++ L  +      AG+ +   GG+ E +             + +ER  S+R    +    V ++ +P                    DL+  +  P++RR+ ++ +D + A+Y     R +R           Y     PL  R  FK+G+L+E QG +DR+
Sbjct:  213 PSKDPNGTANRTIFQVRQVISNNPTTTVSSSPQAFQSAATTVGGILPIGWIEKHCHALPSVLIIVTSIDLSLSSEIQKQQDEHLVEVIDMLRSSLASK--RECRIHLACLVTSIGSAGSTSADHGGKGEEEKVESGLNSTVSSAIENERLASIRSMCRLSPSAVSLLHDPIDLNTVTNSNSMSSIDTATNDLSMENITPALRRLHRSVRDASNAYYLGQARRAKRKHSTFASNIHKYPFALLPLAARYLFKIGILYEFQGKLDRA 475
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9267.30689.1 vs. uniprot
Match: A0A7S1ZW06_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZW06_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 4.270e-7
Identity = 63/265 (23.77%), Postives = 111/265 (41.89%), Query Frame = 1 
Query:  307 PAKKPSGGAWRGADGLRVVDSALPK------------------GLVKRGWLHKHTRELPGSLVYLASVDVSAGAEDWADTED---EIVGDLRSVVANMAARDVKVLLVLV-----RAGAEAGQGGGREERD-------------VADERALSLRRRAEIDARMVLMIGEP--------------------DLASHSNPPSVRRIAKAAKDLAVAHYASHISRIRRWEKVLVPTQRLYR----PLLTRLYFKLGVLHEMQGLVDRS 912
            P+K P+G A R    +R V S  P                   G++  GW+ KH   LP  L+ + S+D+S  +E     ++   E++  LRS +A+   R+ ++ L  +      AG+ +   GG+ E +             + +ER  S+R    +    V ++ +P                    DL+  +  P++RR+ ++ +D + A+Y     R +R           Y     PL  R  FK+G+L+E QG +DR+
Sbjct:  213 PSKDPNGTANRTIFQVRQVISNNPTTTVSSSPQAFQSAATTVGGILPIGWIEKHCHALPSVLIIVTSIDLSLSSEIQKQQDEHLVEVIDMLRSSLASK--RECRIHLACLVTSIGSAGSTSADHGGKGEEEKVESGLNSTVSSAIENERLASIRSMCRLSPSAVSLLHDPIDLNTVTNSNSMSSIDTATNDLSMENITPALRRLHRSVRDASNAYYLGQARRAKRKHSTFASNIHKYPFALLPLAARYLFKIGILYEFQGKLDRA 475
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9267.30689.1 vs. uniprot
Match: A0A1R3HEW1_COCAP (Foie-gras_1 domain-containing protein n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3HEW1_COCAP)

HSP 1 Score: 64.7 bits (156), Expect = 4.710e-7
Identity = 59/200 (29.50%), Postives = 100/200 (50.00%), Query Frame = 1 
Query:  364 DSALPKGLVKRGWLHKHTRELPGSLVYLASVD-VSAGAEDWADTEDEIVGDLRSVVANMAARDVKVLLVLVRAGAEAGQGGGREERDVADERALSLRRRAEIDARMVLMIGEPDLASHSNPPSVRRIAKAAKDLAVAHYASHISRIR-RWEKVLVPTQRLYRPLLTRLYFKLGVLHEMQGLVDRSLLCYQEVSALLSDMV 957
            +S++  G++KR WL KH  ++P  +  L S D VS     W     ++  DL  + A +  R++K+L+V++               + +++R L+LR+RAEIDA+ +L+   PD +  +N  S++R+  A  +LA   Y     RI+ R EK    +      L  R  FK+GV  E +     +L  Y++    L +MV
Sbjct:   62 NSSVGGGILKRDWLVKHRTKIPAVVGALFSWDHVSGDPAQWV----QVCSDLDHLKAAIRPRNIKLLVVVLL-----------HSEETSEDRLLALRKRAEIDAKYLLLFN-PDPSQLNN--SLQRLGDALAELATTFYRDEGRRIKARIEKKSFSSL----DLQVRYCFKVGVYAEFRRDWVEALRFYEDAYHALREMV 239
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9267.30689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JA98_9PHAE1.750e-24796.97Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FX28_ECTSI2.190e-23396.97Foie-gras_1 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5J7Z5_9PHAE5.990e-4470.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A418AIK4_9STRA1.590e-1628.30Foie-gras_1 domain-containing protein n=2 Tax=Apha... [more]
A0A485L0Z1_9STRA6.260e-1325.18Aste57867_14202 protein n=1 Tax=Aphanomyces stella... [more]
UPI0006D516441.170e-726.34trafficking protein particle complex subunit 11 n=... [more]
A0A8B8KNF2_ABRPR1.580e-729.65trafficking protein particle complex subunit 11 n=... [more]
A0A7S1ZVI0_9STRA3.760e-723.77Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S1ZW06_9STRA4.270e-723.77Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A1R3HEW1_COCAP4.710e-729.50Foie-gras_1 domain-containing protein n=2 Tax=Corc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9267contigEcto-sp8_S_contig9267:708..7313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score700.3
Seed ortholog evalue6.1e-199
Seed eggNOG ortholog2880.D7FX28
Model size1862
KEGG koko:K02575,ko:K20308
KEGG TC2.A.1.8
KEGG Pathwayko00910,map00910
KEGG ModuleM00615
Hectar predicted targeting categoryother localisation
Exons9
EggNOG free text desc.regulation of protein complex stability
EggNOG OGsKOG4386@1,KOG4386@2759
Cds size1395
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9267.30689.1prot_Ecto-sp8_S_contig9267.30689.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9267 708..4951 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145279.9760075-CDS-Ecto-sp8_S_contig9267:707..12621681145279.9760075-CDS-Ecto-sp8_S_contig9267:707..1262Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9267 708..1262 +
1681145279.9883945-CDS-Ecto-sp8_S_contig9267:1891..21391681145279.9883945-CDS-Ecto-sp8_S_contig9267:1891..2139Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9267 1892..2139 +
1681145279.9988632-CDS-Ecto-sp8_S_contig9267:2621..27481681145279.9988632-CDS-Ecto-sp8_S_contig9267:2621..2748Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9267 2622..2748 +
1681145280.01013-CDS-Ecto-sp8_S_contig9267:3179..33051681145280.01013-CDS-Ecto-sp8_S_contig9267:3179..3305Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9267 3180..3305 +
1681145280.0226152-CDS-Ecto-sp8_S_contig9267:3774..40941681145280.0226152-CDS-Ecto-sp8_S_contig9267:3774..4094Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9267 3775..4094 +
1681145280.0339713-CDS-Ecto-sp8_S_contig9267:4932..49511681145280.0339713-CDS-Ecto-sp8_S_contig9267:4932..4951Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9267 4933..4951 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145280.046286-UTR-Ecto-sp8_S_contig9267:4951..50941681145280.046286-UTR-Ecto-sp8_S_contig9267:4951..5094Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9267 4952..5094 +
1681145280.0576057-UTR-Ecto-sp8_S_contig9267:5784..58861681145280.0576057-UTR-Ecto-sp8_S_contig9267:5784..5886Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9267 5785..5886 +
1681145280.0721605-UTR-Ecto-sp8_S_contig9267:6610..67951681145280.0721605-UTR-Ecto-sp8_S_contig9267:6610..6795Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9267 6611..6795 +
1681145280.0860858-UTR-Ecto-sp8_S_contig9267:7276..73131681145280.0860858-UTR-Ecto-sp8_S_contig9267:7276..7313Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9267 7277..7313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9267.30689.1

>prot_Ecto-sp8_S_contig9267.30689.1 ID=prot_Ecto-sp8_S_contig9267.30689.1|Name=mRNA_Ecto-sp8_S_contig9267.30689.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=465bp
MQVDQREALEDPRPLVGIMAHAYANPLINKRAPGAGSGTAAGDTNTDAAG
GGGDAAELDASTAAAAAAANELVIDALLAAEAETIGPEVRFLGLPRGTAA
PFPAKKPSGGAWRGADGLRVVDSALPKGLVKRGWLHKHTRELPGSLVYLA
SVDVSAGAEDWADTEDEIVGDLRSVVANMAARDVKVLLVLVRAGAEAGQG
GGREERDVADERALSLRRRAEIDARMVLMIGEPDLASHSNPPSVRRIAKA
AKDLAVAHYASHISRIRRWEKVLVPTQRLYRPLLTRLYFKLGVLHEMQGL
VDRSLLCYQEVSALLSDMVPRDGGRFQGGRGDADRGTLGGAFVRGGADPM
EQIRGVAEVVHLRLVRNHLHRNMSVEGAIRQLRRHVSAFGRPGDAAAAAA
ASSRAGKGSPSSTSSAGGGGGEAAGKPGGGGGGGGVQDGGWCLTVTTRGC
RGSTLCSERCWVLT*
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mRNA from alignment at Ecto-sp8_S_contig9267:708..7313+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9267.30689.1 ID=mRNA_Ecto-sp8_S_contig9267.30689.1|Name=mRNA_Ecto-sp8_S_contig9267.30689.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=6606bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9267:708..7313+ (Ectocarpus species8 EcLAC_412)
ATGCAGGTTGATCAGCGAGAGGCGCTAGAGGACCCCCGCCCTTTGGTGGG
GATCATGGCCCATGCCTACGCCAACCCCCTCATCAACAAGAGGGCTCCCG
GCGCAGGCAGCGGCACCGCCGCGGGGGACACCAACACCGACGCCGCCGGT
GGAGGAGGCGACGCGGCAGAACTAGACGCGTCGACAGCGGCGGCGGCGGC
GGCGGCCAACGAGCTCGTGATCGACGCCCTCCTTGCGGCGGAGGCGGAGA
CCATCGGCCCCGAGGTACGGTTCCTCGGCCTGCCTCGAGGCACTGCTGCC
CCTTTCCCGGCGAAGAAGCCGAGCGGCGGCGCCTGGCGCGGGGCCGACGG
GCTCAGGGTGGTGGACAGCGCCCTCCCGAAGGGGCTGGTGAAGCGGGGCT
GGTTGCACAAGCACACGCGAGAGCTCCCGGGCTCGCTGGTGTACCTTGCC
TCGGTGGACGTCTCGGCGGGAGCGGAGGATTGGGCGGACACCGAGGATGA
GATCGTCGGAGATCTGAGGAGCGTCGTGGCTAACATGGCGGCGCGGGATG
TCAAGGTGCGGGGAGGTGCCAAATGTGGTTGGCCGTACGGGAGGTCTGTG
TGCGTTGCTTTGTGTGACGCAGCACTACGGTTGGTATTTTTTTCACTATC
GTTTGGCCACGCGATTGCTTTGGCCCCGCGACTCTGCTGCTGTGCTATGG
TGGTACTCGTTGATACTCCCCGTGTCTCCGCCAGCCCATGCGACACCCGC
TGGATGCTCCTGCAACCGACTACTCGTACTGACAAACAGCAGTGGATGCG
ACGCAGTTGGCAGTGCGGCGAGTAGATGACAACGCCCACCGCTGCGAGTT
GCAGCATCGGGCCTTCAGGCGTGAGAACAGAGATGCGATCATCAACACGC
ATGTTCTCCATGTACTACTGCCAGTACCGCCTTGTCGCCTTCGCCACATG
CACGCATGCCTGCTGTGCACTTTTAGGTGACGATCACTTTGCCCGTGCAG
CACGCTGTCGTCGCCATGTTTCTCCTCGTCCCCCTTTTAACGTACCCAAT
GGTTGGACCACTCGCCCTCTGTCTCTGCCTGTCTCTCTCTCTGTCTCTAT
CTGTCTAATCTGTCTGTCTGTCTCTCTCTGTCTGTCTGTCTGTCTGTCTC
TCTCTCTCTCTCTCACTCTCTCTCTCTCGAGCAGGTATTGTTGGTGCTCG
TACGGGCCGGCGCGGAGGCCGGGCAGGGCGGGGGAAGGGAGGAGCGGGAC
GTGGCCGACGAGCGCGCGCTGAGCCTCCGCAGGCGGGCGGAGATCGACGC
CAGGATGGTGCTCATGATCGGCGAGCCCGACCTGGCTTCCCACAGCAATC
CCCCCTCGGTGCGGCGCATCGCGAAGGCGGCCAAGGACTTGGCCGTCGCC
CACTACGCCTCGCACATCTCGCGCATTCGAAGGTGATGACGGCTTCACAC
AGCAGTGCTACTGAACCCCCGTGTACTCAAGTATTCAAGATTACTCAGTT
TATCCCAAGTGGCAATGCCTACGGGAAGTTGACCAGGATGTCGAGGGAAT
ATCTCATTCAGACCTCCGTGCTGCAGTGTGCAAGTGGTGGTGTCTCCCGC
GATTGTGACCTGTTGAGCGCACGGCGCTTACGGCAACAGCAGCGGTAGCA
GTGGTCCTTCCCCTTCGGGGGCACACCCGGTCTTTGGTGGGGGAAGATTA
AGATTGCTAGTCTCAGCAGTTCTGGTCTAGGGGTTGGAATGGTCGGAGAA
GCCCACTTCCGTAAGACAGCTCACCCTTGCCTCATCTTAGCACATCTTCG
GGGAGAAGTGCAAAGGGGTATCCCTAAACACCGCCCCGTCCGCGCAAGCT
TATCCCAACCCTAATCCAGCCGCTCCCCTCCTGCCTGTCTGCGACATTTT
GCGGAATCCCCAAGATGGGAAAAGGTGCTGGTGCCTACGCAGCGACTGTA
CCGCCCGCTCCTGACGAGGCTGTACTTTAAGCTCGGCGTTCTTCACGAGA
TGCAGGGCCTCGTGGATAGGAGCTTGCTGTGCTACCAAGAGGTACTTACG
ATGCGTCTTACGTGGCATGCGCTTGTACGTGTACGCGCGTGCGATTGCTT
TCGTTTTTCCCTTTTGGCGCGGTGGAAGAATTGAGGGGGGAGGGGTCAAC
GGCGGTGTCTTTGTTCTGATGGGTCCTTTGGAAGCTGAGACCAAAGCATC
CTGAGCGGTACCGGTTGCAGTACAATGGCAATTGAGCTGATTTATTTACC
CACATCGCCTCCCAATACACGCTCAGCCTGTGCACCCTGGTCTGTCTCCC
ATGTGGTTGATGCTTTTGGTAACGCAAGCGGTACCGTCCAAAGATTTTCG
TGTATGTTAATTGCCAACATCGGTGCTGGTTGCTAACAACTGCTTAACCG
CTGTGCCACCCCTCCCTATTCATGTACGTTGCACTTGCGGCACGTTGTTC
TCTCTCGCAAACTGAACGAAAGGTGTCGGCTCTTCTGAGCGACATGGTGC
CGCGGGACGGGGGACGGTTTCAGGGTGGAAGGGGCGACGCAGATAGAGGA
ACGCTGGGGGGGGCATTCGTTCGTGGGGGAGCGGACCCGATGGAGCAGGT
GAGACTGACTAGAGGGAAGATTCGATGTTGCGCGATTGATCTATTATTGA
TGTTCTGTTTTGGTGCTTTCGTTGTGAAGCTGTAGTACCTGGTGTGCGGT
AGGCACGTGTTGCTGATATTGGCGTCCCGAATCACAGCGTTTCTTTCTTG
ACACGTCTTTTTCGCTGTCTCTCGAATTTTTCTTCTTCTTGCCTCACCTT
TGCGGGCGTGCTTCAAGTGTTCGTGTTTTCCTCCCCTCCGTTCGACCAGC
TTGACACCAAGAGACGAAGCGGGCCAGAAGTCCCTGGTTGAGATGTGTCC
TCCCTTTGCCGAAGCTGTCCTTGGCACATAATACTTTGTTTCATTGACAC
GATGACGAGTTTCCTCTATGGCAATATCCTTGTTCTTGTTCATTCGTTTT
TCTCAACCACACAACAACGACAACGACGGCGAACAACAACAACATCAACA
ACAACAACAACAACTAGATCCGAGGCGTGGCAGAAGTGGTCCACCTCCGG
CTGGTGCGGAACCACCTGCACCGCAACATGAGCGTCGAGGGGGCCATCCG
ACAGCTCCGGCGGCACGTGTCCGCATTCGGCAGACCCGGTGATGCTGCGG
CCGCCGCCGCCGCTTCTTCCCGTGCCGGAAAAGGCTCGCCTTCGTCTACG
TCTTCGGCTGGTGGTGGTGGGGGGGAGGCGGCGGGGAAGCCAGGAGGAGG
AGGGGGGGGGGGGGGGGTTCAGGATGGGGGGTGGTGCCTTACCGTCACCA
CGCGTGGCTGTCGCGGCAGTACCTTGTGTTCGGAGAGGTGAGAGGATGTG
TATCGAAGATAGAGAAGATAGAGCTGTTGGATGTAGGTATTCGGTTGGTT
AGCGGCGTACTACCCAGCAGCAGCGTAGCGATTTATGGGGCGGATACCAG
ATGGAGTGATAGTTGGGAGTTGTTAGGGTTGCTTGGCGTGTTGGCGGGAT
CAAGAGCCGAGGACAGTTTATCTGTTCAAAGAGAAGCTCAGAAGATGGGG
GGCGTGGGGTTGGGAGATGTCCAGGTCGCGTTTTGTTCACCCTTTGACTC
ATGTTTGCTGTTTCTGGCAGCTGTGCGCGTCCTTTCTGGTACACACTCCC
CAAGAAACTTGAGGCAATCGGAAGCGGAATGCCGGGCGGCGTGGTCTCGG
AGCCGCTTGTTGTCGAGCCTGCCCCCTTCCATGTCTTGTCTATCTGTCCG
ACTTTCTGAGCGAGAGGGGGGCTTCATTGAACCCAAGAGCATCAGCCTGC
AGTTAGCCGACCAAAAACGTCCGGAATATGTCGCGCCATGCTTGGCTCCC
TCTTTGAGTAAAACAAAGACATCAACACACCCCTTCGACAGGGGTAGGGG
TGATGTACCGTCTCGAACGGGTAGTCTTTGAGTGATTTGAATGCATGTGT
GTTCTAGTTACTAATTTCGTCGTGTGGTTTTTTTGTTCTTCCCCCGAACC
TCCTCCTCTCGCTCTCTGTCTCTCTGTGTGTGTGTGTGTGTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCCTTCTGTATATCGAAT
ACCTGCGCGCGTCTGCGCGGGTGATGTATCTCTCCCGGCGACTTGTCCGT
CCTTTGCACCGCTCACCGTCAAAAGATGCTGGGTGCTCACATGAGCCAGA
TCGCGCAGTCAACCGCGCGCGGGGGTGGGTGGGCGGGAGGCGGCGCGCTC
GGATACACGTCCCCGGGGCACTACTACCTCGGCGCCGCCCTGCAGGCCGT
TCGGCGAAGGAAGACAGCCGACAGGCTTCTGAGAGGAGTGAGTGGTTCCA
AATTGTTTCCGAAGTTCTGAAGTAAGACAACCGAGAGGTTTCTTAAGAGG
CATGACACTGGTATTTTGAGAAGGTCTTGGCCACTTTTCGAGACGGAGAG
GAAGTGGCGACGTGGGCACTGAGCGGCAGCAGTAATTTTCCACGACAGAG
GGGCGCGTTGGCGTCACAGAGGGACCAGCGTGACGCCAGTTGCAGGGGTA
CGAGGTTTGTTGGGCACTGCTGTGGCCTAAGGGGGTCGCAACTTTGCAAT
TTTAGTTTGTTTAAGTTTGAGACAGAGGACGCACCCGTTCGGCGAAGGAA
GAAGTTTCTGGCGCGGGTGTCTGTTAGGTATGTCAGAGAGCGCAGGCCGG
CACGAAATATTCCACAACGGCACAACAACAGGGTCGGCTGTTTCGTTGTT
TTGCGTATTCTTGGTGTTGCGCTTCACAATGGTCGGTGTAGTGCTCTCCG
TCCTGCCGCCAACCTTGTTGGCTTTACCAGTCAGCCCCTCCAACGACACC
GCTAAGCCGCCGCATGCCTTGCAAGTCGCATCGGCACTATTATAGTGATC
ATGTTCTTCTTGTGTGGGCACAGCCACCGCCCCCCTTACCACCCAGCCAC
GTCGTCGTACTAACCCTCCCCCCTCTCTCCCACACGTTGTGGCAATGTCG
CGAAACGGCACCAATGACGCCGAGAAGATCGACAAAGATAAGCTCCTGGC
TTCTCTGGAGGGCCTTGAAGTGCGGGAGCCTTTGTACCTAGGGGAGAGCG
TGCGGCTCGTCGACCCTACGAACGCCGAGGTGAGTCGGATGAAGTGGACA
CACGAATGGTGAGGGCTGCCTACGCAAAGAAAGTAAGTTTATTGCGAAAA
AAAAAAACAGGCAGGGGGCTCGCAGACCGTAACCTTAACTTAGCCGATTC
TATACTTTATCTAGTATGTTTTTTTACTTAGAAAATGCTGCGTAGACTAC
TGAATCATCAACCCAACGGCCAGGCATTGGAGTCACTGTTTTTTTTTTTG
CAACATCCCACTTTCTGCGGTCTACCTACCGCTTGGTGGTCGTTGGCGAA
CGCATCATCAATCATCATGGAAATTTTCACGAGAAACTAGCTGCTCTTCC
GGTTCTGTACAGCCCAGACGTTGCTACGAGCACGTTCGCAAGCCCAGCTT
TTTTCGACTTTTTTCGAGTTGAGGCTAATTTCCTCATCGCGTTGTCATGG
TCGAGAGCCGAAGCTTGATGGCCAGCGTTCCTGCCTGGCTGGCTCATTCG
ATGGGACTCGTCCGTTTATGATCGGCTTCCTCAACGAATTGTCCAAGGGC
TTTTCGTCATCAGTTGCCTTTTTGCGTTGCCGGATTCTTATGTTGTCGTC
TTCATCACGTACACAGTCGACCCTAACCCGGACTGCATAGTTGTCTTCGA
CGCTGCCTCAAGTAACCCTTTCCCTTTAACCCCACGACCCCCCCCCCCCT
GGTTCAACATCCGCCCACGGCACGACCAACAACAACGACGACGATGACGA
CAGCGAAACCTTCGAGAGGAGTGCCGAGGGTTCCTGGACCTGGAGGAGAC
CAAGACCGACAGGGTGGGGATGGCTCGTTCCCTGCTGGTGAAGGCTCTGG
AGCACTGCCCGTCGGGAGAGGATGGCTTCCGACGGCGGCGGGTGCTTATC
CTAGGGCACCTCGGGGAGGAGAGCTTCGTCGCGGGAAGGTAGGATGAAAT
GGGACGGAACGAAATGGGATGGGATGGGATAGAATGAAAAGGGGTGGGGT
GGGGTGGGGTGGGATGCTATGGGTTGTGTTGGGCGGGATAATTAGGTCTT
TGTGAGCGAGCCCGCGCGACCTCGAAGAGAAGGTTTTTCGGCGGCCATGT
GGATGCGTTGGGGTGGGGTGGGGTGGAGTGGGGTGGGAGGGTACGACGTA
GATGCAATCGTTGAGTTGAAGGGGTTGAGTCCCTCCCCCCGTGAGAGTTG
TCGTTTCGGGACCTTGGCGATGGGAGCATTCAGTACTGCGTGAAGCGTGG
AACTAAGACGTGGAACTATTTTCGAGTTTGATGGCACTGTACACACCGGC
GATACTGCTGTGTAGCTTCGGTGGCGCGATGGCTTTCCGATCACCACCAA
CTTGTTGCCAAATAATAAACGCGAGCTTCGTCTGCTCCTCCTTCTCTATC
CCCCGTCCGTTCCCGCCAGATACGACGACGCATTGGAACGCCTGCCACCT
GTGTGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9267:708..7313+

>mRNA_Ecto-sp8_S_contig9267.30689.1 ID=mRNA_Ecto-sp8_S_contig9267.30689.1|Name=mRNA_Ecto-sp8_S_contig9267.30689.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1395bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9267:708..7313+ (Ectocarpus species8 EcLAC_412)
ATGCAGGTTGATCAGCGAGAGGCGCTAGAGGACCCCCGCCCTTTGGTGGG
GATCATGGCCCATGCCTACGCCAACCCCCTCATCAACAAGAGGGCTCCCG
GCGCAGGCAGCGGCACCGCCGCGGGGGACACCAACACCGACGCCGCCGGT
GGAGGAGGCGACGCGGCAGAACTAGACGCGTCGACAGCGGCGGCGGCGGC
GGCGGCCAACGAGCTCGTGATCGACGCCCTCCTTGCGGCGGAGGCGGAGA
CCATCGGCCCCGAGGTACGGTTCCTCGGCCTGCCTCGAGGCACTGCTGCC
CCTTTCCCGGCGAAGAAGCCGAGCGGCGGCGCCTGGCGCGGGGCCGACGG
GCTCAGGGTGGTGGACAGCGCCCTCCCGAAGGGGCTGGTGAAGCGGGGCT
GGTTGCACAAGCACACGCGAGAGCTCCCGGGCTCGCTGGTGTACCTTGCC
TCGGTGGACGTCTCGGCGGGAGCGGAGGATTGGGCGGACACCGAGGATGA
GATCGTCGGAGATCTGAGGAGCGTCGTGGCTAACATGGCGGCGCGGGATG
TCAAGGTATTGTTGGTGCTCGTACGGGCCGGCGCGGAGGCCGGGCAGGGC
GGGGGAAGGGAGGAGCGGGACGTGGCCGACGAGCGCGCGCTGAGCCTCCG
CAGGCGGGCGGAGATCGACGCCAGGATGGTGCTCATGATCGGCGAGCCCG
ACCTGGCTTCCCACAGCAATCCCCCCTCGGTGCGGCGCATCGCGAAGGCG
GCCAAGGACTTGGCCGTCGCCCACTACGCCTCGCACATCTCGCGCATTCG
AAGATGGGAAAAGGTGCTGGTGCCTACGCAGCGACTGTACCGCCCGCTCC
TGACGAGGCTGTACTTTAAGCTCGGCGTTCTTCACGAGATGCAGGGCCTC
GTGGATAGGAGCTTGCTGTGCTACCAAGAGGTGTCGGCTCTTCTGAGCGA
CATGGTGCCGCGGGACGGGGGACGGTTTCAGGGTGGAAGGGGCGACGCAG
ATAGAGGAACGCTGGGGGGGGCATTCGTTCGTGGGGGAGCGGACCCGATG
GAGCAGATCCGAGGCGTGGCAGAAGTGGTCCACCTCCGGCTGGTGCGGAA
CCACCTGCACCGCAACATGAGCGTCGAGGGGGCCATCCGACAGCTCCGGC
GGCACGTGTCCGCATTCGGCAGACCCGGTGATGCTGCGGCCGCCGCCGCC
GCTTCTTCCCGTGCCGGAAAAGGCTCGCCTTCGTCTACGTCTTCGGCTGG
TGGTGGTGGGGGGGAGGCGGCGGGGAAGCCAGGAGGAGGAGGGGGGGGGG
GGGGGGTTCAGGATGGGGGGTGGTGCCTTACCGTCACCACGCGTGGCTGT
CGCGGCAGTACCTTGTGTTCGGAGAGATGCTGGGTGCTCACATGA
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