mRNA_Ecto-sp8_S_contig926.30679.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig926.30679.1 vs. uniprot
Match: D8LQE7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE7_ECTSI) HSP 1 Score: 429 bits (1103), Expect = 1.690e-147 Identity = 218/220 (99.09%), Postives = 219/220 (99.55%), Query Frame = 3
Query: 237 MASNRSERLTVHQKKKMSRALVRARRLRNASMATVLGEEEWSGYEATMRQGLRELDDTTEVKRRGTYASKPLVSAAPQIDENDDGRLLSERDAWAERMEGVWNEILQADAKGTRPRITLPGFPIHVVMVKIARDYGHHKIFWELSDVDTRPPNSVLRQLYEARKQGFNARAVVVKSTAERLRKYEGYLRANLARRVPMRRVPEVRWQHVSEMPMSLQIEL 896
MASNRSERLTVHQKKKMSRALVRARRLRNASMATVLGEEEWSGYEATMRQGLRELDDTTEVKRRGTYASKPLVSAAPQ D+NDDGRLLSERDAWAERMEGVWNEILQADAKGTRPRITLPGFPIHVVMVKIARDYGHHKIFWELSDVDTRPPNSVLRQLYEARKQGFNARAVVVKSTAERLRKYEGYLRANLARRVPMRRVPEVRWQHVSEMPMSLQIEL
Sbjct: 1 MASNRSERLTVHQKKKMSRALVRARRLRNASMATVLGEEEWSGYEATMRQGLRELDDTTEVKRRGTYASKPLVSAAPQADKNDDGRLLSERDAWAERMEGVWNEILQADAKGTRPRITLPGFPIHVVMVKIARDYGHHKIFWELSDVDTRPPNSVLRQLYEARKQGFNARAVVVKSTAERLRKYEGYLRANLARRVPMRRVPEVRWQHVSEMPMSLQIEL 220
BLAST of mRNA_Ecto-sp8_S_contig926.30679.1 vs. uniprot
Match: A0A6H5KAD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAD8_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 1.560e-17 Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = -2
Query: 1229 READWNTRLPHVKFAYSNSVSAATGFAPNDVHMN*LPRLPMTALEHPYARGHQSLKR 1399
R+ DW+ LPHV+FAY+NSVSAATG APN+VH+N LPR+PMT EHPYARGHQSL R
Sbjct: 523 RQDDWDIHLPHVEFAYNNSVSAATGLAPNEVHINRLPRMPMTVFEHPYARGHQSLHR 579
BLAST of mRNA_Ecto-sp8_S_contig926.30679.1 vs. uniprot
Match: A0A6H5JUZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ4_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 2.310e-17 Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = -2
Query: 1229 READWNTRLPHVKFAYSNSVSAATGFAPNDVHMN*LPRLPMTALEHPYARGHQSLKR 1399
R+ DW+ LPHV+FAY+NSVSAATG APN+VH+N LPR+PMT EHPYARGHQSL R
Sbjct: 1044 RQDDWDIHLPHVEFAYNNSVSAATGLAPNEVHINRLPRMPMTVFEHPYARGHQSLHR 1100
BLAST of mRNA_Ecto-sp8_S_contig926.30679.1 vs. uniprot
Match: A0A6H5JL71_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL71_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 6.060e-17 Identity = 41/57 (71.93%), Postives = 49/57 (85.96%), Query Frame = -2
Query: 1229 READWNTRLPHVKFAYSNSVSAATGFAPNDVHMN*LPRLPMTALEHPYARGHQSLKR 1399
R+ DW+ LPHV+FAY+NSVSAATG APN+VH+N LPR+PMT EHPYARGH+SL R
Sbjct: 771 RQDDWDIHLPHVEFAYNNSVSAATGLAPNEVHINRLPRMPMTVFEHPYARGHRSLHR 827
BLAST of mRNA_Ecto-sp8_S_contig926.30679.1 vs. uniprot
Match: A0A6H5KPF8_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF8_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 1.210e-13 Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = -2
Query: 1217 READWNTRLPHVKFAYSNSVSAATGFAPNDVHMN*LPRLPMTALEHPYARGHQSLKRIKLS 1399
R+ DW+ LPHV+FAY+NSV+ ATG APN+VH+ LPRLP++ L+HP GHQSL R +L+
Sbjct: 242 RQDDWDVHLPHVEFAYNNSVNTATGLAPNEVHIGRLPRLPLSVLDHPSVGGHQSLDRDQLA 302
BLAST of mRNA_Ecto-sp8_S_contig926.30679.1 vs. uniprot
Match: A0A6H5L4A9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A9_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 1.330e-12 Identity = 31/57 (54.39%), Postives = 44/57 (77.19%), Query Frame = -2
Query: 1229 READWNTRLPHVKFAYSNSVSAATGFAPNDVHMN*LPRLPMTALEHPYARGHQSLKR 1399
++ DW+ LPHV+FAY+NSV+ +TG APN++HM +PRLP++ +HP GHQSL R
Sbjct: 43 QQNDWDVHLPHVEFAYNNSVNQSTGLAPNEIHMGRIPRLPLSVFDHPSVGGHQSLDR 99
BLAST of mRNA_Ecto-sp8_S_contig926.30679.1 vs. uniprot
Match: A0A6H5K7Q6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Q6_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 2.170e-12 Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = -2
Query: 1229 READWNTRLPHVKFAYSNSVSAATGFAPNDVHMN*LPRLPMTALEHPYARGHQSLKR 1399
+E DW+ LPHV+FAY+NSV+ +TG APN +H+ +PRLP++ +HP GHQ L R
Sbjct: 43 QENDWDVHLPHVEFAYNNSVNQSTGLAPNKIHIERIPRLPLSVFDHPTVGGHQGLAR 99
BLAST of mRNA_Ecto-sp8_S_contig926.30679.1 vs. uniprot
Match: A0A6H5K2S7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2S7_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 9.730e-12 Identity = 31/57 (54.39%), Postives = 44/57 (77.19%), Query Frame = -2
Query: 1229 READWNTRLPHVKFAYSNSVSAATGFAPNDVHMN*LPRLPMTALEHPYARGHQSLKR 1399
++ DW+ LPHV+FAY+NSV+ +TG APN++HM +PRLP++ +HP GHQSL R
Sbjct: 276 QQNDWDVHLPHVEFAYNNSVNQSTGLAPNEIHMGRIPRLPLSVFDHPSVGGHQSLDR 332
BLAST of mRNA_Ecto-sp8_S_contig926.30679.1 vs. uniprot
Match: A0A6H5L0E0_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0E0_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 1.330e-11 Identity = 30/57 (52.63%), Postives = 45/57 (78.95%), Query Frame = -2
Query: 1229 READWNTRLPHVKFAYSNSVSAATGFAPNDVHMN*LPRLPMTALEHPYARGHQSLKR 1399
++ DW+ +LPHV+FAY+NSV+ +TG APN++H+ +PRLP++ +HP GHQSL R
Sbjct: 196 QQNDWDIQLPHVEFAYNNSVNQSTGLAPNEIHIGRIPRLPLSVFDHPTVGGHQSLAR 252
BLAST of mRNA_Ecto-sp8_S_contig926.30679.1 vs. uniprot
Match: A0A6H5KGR2_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGR2_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 1.460e-11 Identity = 30/55 (54.55%), Postives = 43/55 (78.18%), Query Frame = -2
Query: 1235 READWNTRLPHVKFAYSNSVSAATGFAPNDVHMN*LPRLPMTALEHPYARGHQSL 1399
++ DW+ LPHV+FAY+NSV+ +TG APN++HM +PRLP++ +HP GHQSL
Sbjct: 276 QQNDWDVHLPHVEFAYNNSVNQSTGLAPNEIHMGRIPRLPLSVFDHPSVGGHQSL 330 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig926.30679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig926.30679.1 >prot_Ecto-sp8_S_contig926.30679.1 ID=prot_Ecto-sp8_S_contig926.30679.1|Name=mRNA_Ecto-sp8_S_contig926.30679.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=266bp MSVFCRTTLLGAAHRAARNCVRQRIELALGGNLEQQQQQHQQRRSMASNRback to top mRNA from alignment at Ecto-sp8_S_contig926:8201..11737- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig926.30679.1 ID=mRNA_Ecto-sp8_S_contig926.30679.1|Name=mRNA_Ecto-sp8_S_contig926.30679.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3537bp|location=Sequence derived from alignment at Ecto-sp8_S_contig926:8201..11737- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig926:8201..11737- >mRNA_Ecto-sp8_S_contig926.30679.1 ID=mRNA_Ecto-sp8_S_contig926.30679.1|Name=mRNA_Ecto-sp8_S_contig926.30679.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=798bp|location=Sequence derived from alignment at Ecto-sp8_S_contig926:8201..11737- (Ectocarpus species8 EcLAC_412)back to top |