mRNA_Ecto-sp8_S_contig926.30678.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig926.30678.1 vs. uniprot
Match: A0A6H5KHT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHT3_9PHAE) HSP 1 Score: 242 bits (618), Expect = 1.760e-77 Identity = 134/168 (79.76%), Postives = 141/168 (83.93%), Query Frame = 1
Query: 4 PLKALKGVQEPGVFPVAGEPASSGESLAPPGQLKPDAKATRMTGRVVGSGGATGASSKGGVYGQAAAEHDEERKGGGEAEDLSEEDPEVEVGDDYGAGPEAGFSSAVAEREVDCDGNSTVGLQGDKGAGSDSMVPRQAGKFLKTEQGKSSCSDHKTARQAEWHTLREE 507
PLKALKGVQEPG FP AG PA + E LA GQ+KPDAKAT MTG VVGSGGATGASSKGGV GQAAAE EERK GGE + L EEDPEVEVGD YGAGP AGFS AVAEREV+CDGNSTVGLQGDKGAGSDSMVPR+AGK LKTE+GKS SD K RQAEWHT RE+
Sbjct: 18 PLKALKGVQEPGFFPAAGAPAWTDEGLAQSGQIKPDAKATGMTGMVVGSGGATGASSKGGVCGQAAAEPKEERKEGGEVKGLLEEDPEVEVGDGYGAGPAAGFSRAVAEREVECDGNSTVGLQGDKGAGSDSMVPREAGKLLKTERGKSCRSDSKRTRQAEWHTPREK 185
BLAST of mRNA_Ecto-sp8_S_contig926.30678.1 vs. uniprot
Match: D7FT65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT65_ECTSI) HSP 1 Score: 228 bits (581), Expect = 1.670e-70 Identity = 153/281 (54.45%), Postives = 184/281 (65.48%), Query Frame = 1
Query: 1 MPLKALKGVQEPGVFPVAGEPASSGESLAPPGQLKPDAKATRMTGRVVGSGGATGASSKGGVYGQAAAEHDEERKGGGEAEDLSEEDPEVEVGDDYGAGPEAGFSSAVAEREVDCDGNSTVGLQGDKGAGSDSMVPRQAGKFLKTEQGKSSCSDHK--TARQAEWHTLREE*MLRWRSSLS*VTSFWCSPSTSDARH*R*TRRADARRLW---WY*LVE--ATCHQSIWLAARRTTSLHMMSGSGVVPE*KRVPRILPGGLVWCLPLEAFGQGDVDLTGVR 822
MPLKALKGV EP FP +G PAS+GESLA GQ+K KA M GRVVGS GATGASS+GGV GQAAAE+ +ERK G EA+ LSEE+PEVEVGD + AG EA S AV ER+V+ DG+STVGL+G+KGA SDS+ PRQAGK LKTEQGKS SD+K T +A + ++ + W L CS T + RRA + Y +E A ++ + MM+ G++PE KRVP+ILP GLVWCLPLEAFGQGDVDL VR
Sbjct: 1 MPLKALKGVLEPVFFPASGAPASTGESLAQSGQIKTGVKANGMHGRVVGSVGATGASSEGGVCGQAAAENCKERKEGSEAKGLSEENPEVEVGDGFDAGAEAELSRAVTERDVEGDGDSTVGLKGEKGADSDSVAPRQAGKLLKTEQGKSFRSDNKGITVMEAALMIVIQQ-LYVWTRDLQ------CSSLTLNEA----CRRAPTLVVMVGGGYMPLERLAGSKKNHEAGVPPAMAGDMMTRPGLMPESKRVPQILPRGLVWCLPLEAFGQGDVDLPVVR 270
BLAST of mRNA_Ecto-sp8_S_contig926.30678.1 vs. uniprot
Match: A0A6H5KTZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTZ8_9PHAE) HSP 1 Score: 169 bits (427), Expect = 1.380e-47 Identity = 124/269 (46.10%), Postives = 155/269 (57.62%), Query Frame = 1
Query: 1 MPLKALKGVQEPGVFPVAGEPASSGESLAPPGQLKPDAKATRMTGRVVGSGGATGASSKGGVYGQAAAEHDEERKGGGEAEDLSEEDPEVEVGDDYGAGPEAGFSSAVAEREVDCDGNSTVGLQGDKGAGSDSMVPRQAGKFLKTEQGKSSCSDHKTARQAEWHTLREE*MLRWRSSLS*VTSF----WCSPSTSDARH*R*TRRADARRLWWY*LVE----------ATCHQSIWLAARRTTSLHMMSGSGVVPE*KRVPRILPGGLV 765
MPL+ALK +E FP AG PAS+ ESLA GQ+K DA AT M GRVVG G ATGASS+ GV GQA AEH +ERK G EA+ LSEED VGD + AGP S AV E++V+ DG+STVGL+ +KGA DS+ PRQAGK LKTEQGKSS S + ++ + + R + V ST D + T RR +V A C ++ T+ +MM+G G++PE KR+PRILP GLV
Sbjct: 1 MPLEALKAARELVFFPAAGAPASTVESLAQSGQIKTDATATGMHGRVVGLGRATGASSEDGVCGQAVAEHCKERKEGSEAKGLSEED----VGDGFDAGPGEELSRAVTEQDVEGDGDSTVGLKREKGADPDSVAPRQAGKLLKTEQGKSSRSQTRESQSGVSYLETIQVQFLQRKVIQPVFELVVIQQLHVSTKDLQCSSLTLSEACRRAPTLVVVVGRGYLPLERLAGCKKNHEAGVPPATAGNMMTGPGLIPESKRLPRILPRGLV 265
BLAST of mRNA_Ecto-sp8_S_contig926.30678.1 vs. uniprot
Match: A0A6H5JV70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV70_9PHAE) HSP 1 Score: 156 bits (394), Expect = 7.870e-41 Identity = 131/308 (42.53%), Postives = 155/308 (50.32%), Query Frame = 1
Query: 7 LKALKGVQEPGVFPVAGEPASSGESL------------APPGQLKPDAKATRMTGRVVGSGGATGASSKGGVYGQAAAEHDEERKGGGEAEDLSEEDPEVEVGDDYGAGPEAGFSSAVAEREVDCDGNSTVGLQGDKGAGSDSMVPRQAGKFLKTEQGKSSCSDHKTARQAEWHTLR------EE*MLR-----------WRSSLS*VTSFWCSPSTSDARH*R*TRRADARRLWWY*LVEATCHQSIWLA-----ARRTTSLHMMSGSGVVPE*KRVPRILPGGLVWCLPLEAFGQGDVDLTGVRYL 828
+K KGV+EP VFP AG PAS+GESL PGQ K D AT + GRVVGS GA GAS++GG+ GQ AAEH EE K GGEAE LSEE+ EV VG GPEA S +VAE EV+ DG STVGL K +DS RQAG +SS SD + RQ WH LR + R WR SLS S P+ +A R + V +C LA R T+ + M+ GV+P RV RI P L CL L+ GQ +VD VRYL
Sbjct: 55 IKEPKGVREPSVFPAAGAPASTGESLNQTGQITSDDMVTQPGQTKADDNATGVDGRVVGSEGAPGASAEGGMCGQVAAEHSEEMKDGGEAEGLSEENAEVAVGGGSSTGPEAELSRSVAELEVEDDGESTVGLN--KKRVTDSTARRQAGT-------RSSRSDGASTRQEAWHNLRFKQYRLNQSQYRNMRMFTKVHTCWRPSLSSSVSVSYRPNYLQCLSLE-LNKACRRVSTFIVTVGESCMPLDRLARNEVRVRPATAGNTMTAPGVMPT-ARVSRIRPCSLWRCLALDVLGQSEVDFACVRYL 351
BLAST of mRNA_Ecto-sp8_S_contig926.30678.1 vs. uniprot
Match: A0A6H5L6Q1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Q1_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 3.880e-16 Identity = 43/59 (72.88%), Postives = 48/59 (81.36%), Query Frame = 1
Query: 685 TSLHMMSGSGVVPE*KRVPRILPGGLVWCLPLEAFGQGDVDLTGVRYLRLTETACLPGD 861
T+ MM+G G++PE KRVP+ILP GLVWCLPLEAFGQGDVDL VR LRLTE A LP D
Sbjct: 60 TAGDMMTGPGLMPESKRVPQILPHGLVWCLPLEAFGQGDVDLPVVRNLRLTEAANLPDD 118 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig926.30678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig926.30678.1 >prot_Ecto-sp8_S_contig926.30678.1 ID=prot_Ecto-sp8_S_contig926.30678.1|Name=mRNA_Ecto-sp8_S_contig926.30678.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=170bp MPLKALKGVQEPGVFPVAGEPASSGESLAPPGQLKPDAKATRMTGRVVGSback to top mRNA from alignment at Ecto-sp8_S_contig926:2257..3676+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig926.30678.1 ID=mRNA_Ecto-sp8_S_contig926.30678.1|Name=mRNA_Ecto-sp8_S_contig926.30678.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1420bp|location=Sequence derived from alignment at Ecto-sp8_S_contig926:2257..3676+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig926:2257..3676+ >mRNA_Ecto-sp8_S_contig926.30678.1 ID=mRNA_Ecto-sp8_S_contig926.30678.1|Name=mRNA_Ecto-sp8_S_contig926.30678.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp8_S_contig926:2257..3676+ (Ectocarpus species8 EcLAC_412)back to top |