mRNA_Ecto-sp8_S_contig926.30678.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig926.30678.1
Unique NamemRNA_Ecto-sp8_S_contig926.30678.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig926.30678.1 vs. uniprot
Match: A0A6H5KHT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHT3_9PHAE)

HSP 1 Score: 242 bits (618), Expect = 1.760e-77
Identity = 134/168 (79.76%), Postives = 141/168 (83.93%), Query Frame = 1
Query:    4 PLKALKGVQEPGVFPVAGEPASSGESLAPPGQLKPDAKATRMTGRVVGSGGATGASSKGGVYGQAAAEHDEERKGGGEAEDLSEEDPEVEVGDDYGAGPEAGFSSAVAEREVDCDGNSTVGLQGDKGAGSDSMVPRQAGKFLKTEQGKSSCSDHKTARQAEWHTLREE 507
            PLKALKGVQEPG FP AG PA + E LA  GQ+KPDAKAT MTG VVGSGGATGASSKGGV GQAAAE  EERK GGE + L EEDPEVEVGD YGAGP AGFS AVAEREV+CDGNSTVGLQGDKGAGSDSMVPR+AGK LKTE+GKS  SD K  RQAEWHT RE+
Sbjct:   18 PLKALKGVQEPGFFPAAGAPAWTDEGLAQSGQIKPDAKATGMTGMVVGSGGATGASSKGGVCGQAAAEPKEERKEGGEVKGLLEEDPEVEVGDGYGAGPAAGFSRAVAEREVECDGNSTVGLQGDKGAGSDSMVPREAGKLLKTERGKSCRSDSKRTRQAEWHTPREK 185          
BLAST of mRNA_Ecto-sp8_S_contig926.30678.1 vs. uniprot
Match: D7FT65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT65_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 1.670e-70
Identity = 153/281 (54.45%), Postives = 184/281 (65.48%), Query Frame = 1
Query:    1 MPLKALKGVQEPGVFPVAGEPASSGESLAPPGQLKPDAKATRMTGRVVGSGGATGASSKGGVYGQAAAEHDEERKGGGEAEDLSEEDPEVEVGDDYGAGPEAGFSSAVAEREVDCDGNSTVGLQGDKGAGSDSMVPRQAGKFLKTEQGKSSCSDHK--TARQAEWHTLREE*MLRWRSSLS*VTSFWCSPSTSDARH*R*TRRADARRLW---WY*LVE--ATCHQSIWLAARRTTSLHMMSGSGVVPE*KRVPRILPGGLVWCLPLEAFGQGDVDLTGVR 822
            MPLKALKGV EP  FP +G PAS+GESLA  GQ+K   KA  M GRVVGS GATGASS+GGV GQAAAE+ +ERK G EA+ LSEE+PEVEVGD + AG EA  S AV ER+V+ DG+STVGL+G+KGA SDS+ PRQAGK LKTEQGKS  SD+K  T  +A    + ++ +  W   L       CS  T +       RRA    +     Y  +E  A   ++         +  MM+  G++PE KRVP+ILP GLVWCLPLEAFGQGDVDL  VR
Sbjct:    1 MPLKALKGVLEPVFFPASGAPASTGESLAQSGQIKTGVKANGMHGRVVGSVGATGASSEGGVCGQAAAENCKERKEGSEAKGLSEENPEVEVGDGFDAGAEAELSRAVTERDVEGDGDSTVGLKGEKGADSDSVAPRQAGKLLKTEQGKSFRSDNKGITVMEAALMIVIQQ-LYVWTRDLQ------CSSLTLNEA----CRRAPTLVVMVGGGYMPLERLAGSKKNHEAGVPPAMAGDMMTRPGLMPESKRVPQILPRGLVWCLPLEAFGQGDVDLPVVR 270          
BLAST of mRNA_Ecto-sp8_S_contig926.30678.1 vs. uniprot
Match: A0A6H5KTZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTZ8_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 1.380e-47
Identity = 124/269 (46.10%), Postives = 155/269 (57.62%), Query Frame = 1
Query:    1 MPLKALKGVQEPGVFPVAGEPASSGESLAPPGQLKPDAKATRMTGRVVGSGGATGASSKGGVYGQAAAEHDEERKGGGEAEDLSEEDPEVEVGDDYGAGPEAGFSSAVAEREVDCDGNSTVGLQGDKGAGSDSMVPRQAGKFLKTEQGKSSCSDHKTARQAEWHTLREE*MLRWRSSLS*VTSF----WCSPSTSDARH*R*TRRADARRLWWY*LVE----------ATCHQSIWLAARRTTSLHMMSGSGVVPE*KRVPRILPGGLV 765
            MPL+ALK  +E   FP AG PAS+ ESLA  GQ+K DA AT M GRVVG G ATGASS+ GV GQA AEH +ERK G EA+ LSEED    VGD + AGP    S AV E++V+ DG+STVGL+ +KGA  DS+ PRQAGK LKTEQGKSS S  + ++    +    +     R  +  V           ST D +    T     RR     +V           A C ++        T+ +MM+G G++PE KR+PRILP GLV
Sbjct:    1 MPLEALKAARELVFFPAAGAPASTVESLAQSGQIKTDATATGMHGRVVGLGRATGASSEDGVCGQAVAEHCKERKEGSEAKGLSEED----VGDGFDAGPGEELSRAVTEQDVEGDGDSTVGLKREKGADPDSVAPRQAGKLLKTEQGKSSRSQTRESQSGVSYLETIQVQFLQRKVIQPVFELVVIQQLHVSTKDLQCSSLTLSEACRRAPTLVVVVGRGYLPLERLAGCKKNHEAGVPPATAGNMMTGPGLIPESKRLPRILPRGLV 265          
BLAST of mRNA_Ecto-sp8_S_contig926.30678.1 vs. uniprot
Match: A0A6H5JV70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV70_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 7.870e-41
Identity = 131/308 (42.53%), Postives = 155/308 (50.32%), Query Frame = 1
Query:    7 LKALKGVQEPGVFPVAGEPASSGESL------------APPGQLKPDAKATRMTGRVVGSGGATGASSKGGVYGQAAAEHDEERKGGGEAEDLSEEDPEVEVGDDYGAGPEAGFSSAVAEREVDCDGNSTVGLQGDKGAGSDSMVPRQAGKFLKTEQGKSSCSDHKTARQAEWHTLR------EE*MLR-----------WRSSLS*VTSFWCSPSTSDARH*R*TRRADARRLWWY*LVEATCHQSIWLA-----ARRTTSLHMMSGSGVVPE*KRVPRILPGGLVWCLPLEAFGQGDVDLTGVRYL 828
            +K  KGV+EP VFP AG PAS+GESL              PGQ K D  AT + GRVVGS GA GAS++GG+ GQ AAEH EE K GGEAE LSEE+ EV VG     GPEA  S +VAE EV+ DG STVGL   K   +DS   RQAG        +SS SD  + RQ  WH LR       +   R           WR SLS   S    P+           +A  R   +   V  +C     LA      R  T+ + M+  GV+P   RV RI P  L  CL L+  GQ +VD   VRYL
Sbjct:   55 IKEPKGVREPSVFPAAGAPASTGESLNQTGQITSDDMVTQPGQTKADDNATGVDGRVVGSEGAPGASAEGGMCGQVAAEHSEEMKDGGEAEGLSEENAEVAVGGGSSTGPEAELSRSVAELEVEDDGESTVGLN--KKRVTDSTARRQAGT-------RSSRSDGASTRQEAWHNLRFKQYRLNQSQYRNMRMFTKVHTCWRPSLSSSVSVSYRPNYLQCLSLE-LNKACRRVSTFIVTVGESCMPLDRLARNEVRVRPATAGNTMTAPGVMPT-ARVSRIRPCSLWRCLALDVLGQSEVDFACVRYL 351          
BLAST of mRNA_Ecto-sp8_S_contig926.30678.1 vs. uniprot
Match: A0A6H5L6Q1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Q1_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 3.880e-16
Identity = 43/59 (72.88%), Postives = 48/59 (81.36%), Query Frame = 1
Query:  685 TSLHMMSGSGVVPE*KRVPRILPGGLVWCLPLEAFGQGDVDLTGVRYLRLTETACLPGD 861
            T+  MM+G G++PE KRVP+ILP GLVWCLPLEAFGQGDVDL  VR LRLTE A LP D
Sbjct:   60 TAGDMMTGPGLMPESKRVPQILPHGLVWCLPLEAFGQGDVDLPVVRNLRLTEAANLPDD 118          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig926.30678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KHT3_9PHAE1.760e-7779.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT65_ECTSI1.670e-7054.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTZ8_9PHAE1.380e-4746.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV70_9PHAE7.870e-4142.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6Q1_9PHAE3.880e-1672.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig926contigEcto-sp8_S_contig926:2257..3676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size862
Hectar predicted targeting categoryother localisation
Exons2
Cds size510
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145279.1058216-CDS-Ecto-sp8_S_contig926:2256..27661681145279.1058216-CDS-Ecto-sp8_S_contig926:2256..2766Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig926 2257..2766 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145279.1170838-UTR-Ecto-sp8_S_contig926:2766..27671681145279.1170838-UTR-Ecto-sp8_S_contig926:2766..2767Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig926 2767..2767 +
1681145279.128403-UTR-Ecto-sp8_S_contig926:3325..36761681145279.128403-UTR-Ecto-sp8_S_contig926:3325..3676Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig926 3326..3676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig926.30678.1prot_Ecto-sp8_S_contig926.30678.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig926 2257..2766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig926.30678.1

>prot_Ecto-sp8_S_contig926.30678.1 ID=prot_Ecto-sp8_S_contig926.30678.1|Name=mRNA_Ecto-sp8_S_contig926.30678.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=170bp
MPLKALKGVQEPGVFPVAGEPASSGESLAPPGQLKPDAKATRMTGRVVGS
GGATGASSKGGVYGQAAAEHDEERKGGGEAEDLSEEDPEVEVGDDYGAGP
EAGFSSAVAEREVDCDGNSTVGLQGDKGAGSDSMVPRQAGKFLKTEQGKS
SCSDHKTARQAEWHTLREE*
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mRNA from alignment at Ecto-sp8_S_contig926:2257..3676+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig926.30678.1 ID=mRNA_Ecto-sp8_S_contig926.30678.1|Name=mRNA_Ecto-sp8_S_contig926.30678.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1420bp|location=Sequence derived from alignment at Ecto-sp8_S_contig926:2257..3676+ (Ectocarpus species8 EcLAC_412)
ATGCCACTAAAGGCCCTGAAAGGGGTCCAGGAGCCCGGGGTTTTCCCTGT TGCTGGCGAGCCAGCTTCGAGTGGCGAGAGTCTCGCCCCGCCGGGTCAGC TCAAGCCCGACGCTAAGGCCACCAGGATGACCGGGAGGGTGGTGGGTTCG GGGGGGGCTACGGGGGCGTCGTCGAAGGGCGGGGTGTACGGGCAGGCGGC GGCAGAGCACGATGAGGAGAGGAAAGGGGGTGGCGAGGCGGAGGACCTCT CGGAGGAGGACCCCGAGGTGGAGGTGGGGGATGATTACGGAGCAGGACCA GAGGCAGGGTTCTCGAGCGCAGTGGCGGAACGGGAGGTCGACTGTGACGG CAACAGCACCGTGGGGCTGCAGGGGGACAAGGGCGCTGGCTCTGACTCAA TGGTGCCTCGTCAAGCCGGAAAGTTTCTCAAGACGGAACAAGGCAAATCC TCTTGCTCAGATCACAAGACAGCCAGGCAAGCAGAATGGCACACTCTGAG AGAGGAATAAAGTAGGCTAAAGCAATCTTGTTATAGAAACCAGCGGATGT CGATAGAGGTTCTTGTCAACATGCAGTTCTTGTTGCCCCCCAAGACAAGC TCGAAAACGACAGGGTCAGGGGTCAGCTGCCTAGAGACGATAAAGGTGAC CTATCGTCCCTTGCCATAGCTCCGATGGTAGGGGACTTCTCCGTTCTTCA AACCTCTTCGGGTTTATCAATTCTACCGAGCGTGGGTGGAGAGAACGGGC GGTCTAATTCCACCACCCCCGTTACAGTGCTCACGCCCTCTCCTCCCGAC ATACATCTCCCCGCCTACTTGCACTTTCTATCATTCAATGAAAATATCTG CCGCGCAGGGGGGGCGATAGGGTACGCAGCTTATCAACCCACCTACTCCT TCCCACGCACGCTCGCCAACCAAATTCACGACCCGCGACAGAGCCTCACG GCCATCCACCGTCTAATTTTGAACCAAATAGAATATTCACGAAGAAGGAC CCATTTGTCCTTTTGACCCTGTCTCATTTCCTCCCTTCGCTTGCCACCAT GCCGACGTGTCTGTTGCAGTGTTGCGGTGGCGGTCCTCACTATCGTGAGT CACCAGTTTTTGGTGTTCACCAAGCACCTCCGATGCTCGTCATTAGCGCT GAACGAGGCGTGCCGACGCGCGCCGACTTTGGTGGTACTAGTTGGTGGAG GCTACATGCCACCAGAGTATCTGGCTGGCAGCAAGGAGGACCACGTCACT CCACATGATGAGCGGGTCAGGCGTCGTGCCGGAGTAAAAAAGGGTACCAC GAATCCTTCCGGGCGGTCTGGTGTGGTGCCTGCCCCTGGAAGCGTTCGGA CAGGGTGACGTTGACCTCACTGGTGTGCGTTACCTGCGACTCACCGAGAC AGCCTGCCTGCCGGGTGACC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig926:2257..3676+

>mRNA_Ecto-sp8_S_contig926.30678.1 ID=mRNA_Ecto-sp8_S_contig926.30678.1|Name=mRNA_Ecto-sp8_S_contig926.30678.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp8_S_contig926:2257..3676+ (Ectocarpus species8 EcLAC_412)
ATGCCACTAAAGGCCCTGAAAGGGGTCCAGGAGCCCGGGGTTTTCCCTGT
TGCTGGCGAGCCAGCTTCGAGTGGCGAGAGTCTCGCCCCGCCGGGTCAGC
TCAAGCCCGACGCTAAGGCCACCAGGATGACCGGGAGGGTGGTGGGTTCG
GGGGGGGCTACGGGGGCGTCGTCGAAGGGCGGGGTGTACGGGCAGGCGGC
GGCAGAGCACGATGAGGAGAGGAAAGGGGGTGGCGAGGCGGAGGACCTCT
CGGAGGAGGACCCCGAGGTGGAGGTGGGGGATGATTACGGAGCAGGACCA
GAGGCAGGGTTCTCGAGCGCAGTGGCGGAACGGGAGGTCGACTGTGACGG
CAACAGCACCGTGGGGCTGCAGGGGGACAAGGGCGCTGGCTCTGACTCAA
TGGTGCCTCGTCAAGCCGGAAAGTTTCTCAAGACGGAACAAGGCAAATCC
TCTTGCTCAGATCACAAGACAGCCAGGCAAGCAGAATGGCACACTCTGAG
AGAGGAATAA
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