mRNA_Ecto-sp8_S_contig9258.30676.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9258.30676.1
Unique NamemRNA_Ecto-sp8_S_contig9258.30676.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9258.30676.1 vs. uniprot
Match: D7FZV3_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZV3_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 1.640e-33
Identity = 72/78 (92.31%), Postives = 74/78 (94.87%), Query Frame = 1 
Query:    1 QIRLEEKLATLDVKLTAIKEYQENSQIYEQTLKDMEAKIDGCKDAFNEEMALLNSQLEEECETGRRDQEERRKITKKA 234
            QIRL EKL TLDV+LTAIKEYQENSQIYEQTLKDMEAKI GCKDAFNEEMALLNSQLEEE ETGRRD+EERRKITKKA
Sbjct:   99 QIRLGEKLGTLDVELTAIKEYQENSQIYEQTLKDMEAKIAGCKDAFNEEMALLNSQLEEEWETGRRDKEERRKITKKA 176
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9258.30676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZV3_ECTSI1.640e-3392.31Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9258contigEcto-sp8_S_contig9258:6115..7005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size235
Hectar predicted targeting categoryother localisation
Exons2
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145279.0336614-CDS-Ecto-sp8_S_contig9258:6115..62561681145279.0336614-CDS-Ecto-sp8_S_contig9258:6115..6256Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9258 6116..6256 -
1681145279.0448482-CDS-Ecto-sp8_S_contig9258:6912..70051681145279.0448482-CDS-Ecto-sp8_S_contig9258:6912..7005Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9258 6913..7005 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9258.30676.1prot_Ecto-sp8_S_contig9258.30676.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9258 6116..7005 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9258.30676.1

>prot_Ecto-sp8_S_contig9258.30676.1 ID=prot_Ecto-sp8_S_contig9258.30676.1|Name=mRNA_Ecto-sp8_S_contig9258.30676.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=78bp
QIRLEEKLATLDVKLTAIKEYQENSQIYEQTLKDMEAKIDGCKDAFNEEM
ALLNSQLEEECETGRRDQEERRKITKKA
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mRNA from alignment at Ecto-sp8_S_contig9258:6115..7005-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9258.30676.1 ID=mRNA_Ecto-sp8_S_contig9258.30676.1|Name=mRNA_Ecto-sp8_S_contig9258.30676.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=891bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9258:6115..7005- (Ectocarpus species8 EcLAC_412)
CAGATACGGCTGGAGGAGAAACTGGCGACCCTCGACGTCAAGCTTACGGC
TATCAAAGAATACCAAGAAAACTCACAAATCTACGAGCAGACGGTACGAG
GCTACCGTGAAGGCGTTGTCGCTCTGGTGGATATCCTTTTGGATCGGTCG
CGCTTCCTGCAATGCAACACCCTGTGGCTTTGGGTTGTAGCGCCTGCATT
GAGGCACCGCTATCGCGGACATTATTTGTTGAAACAGCTTTAACGGGCGT
TGCTTTGGTGTAAGTTTGGCAGTTCCCCATTCTTTCTGATAAGTTCCCTC
CGCTTGGTTCCGGACAGCGTGTTCTAATCATCTTATCAACATGTGTACAT
GTTCGAGCTTGCAAGAGGGATACTTGATTTCATTGTTGAACGCCCAAACG
TCAGCAAGGAAACCGAGCGTTTTCCTCTGCCATACTTGCTGGGAGTATGG
GTTGGAACACGTCTGTCGTCTGCTGCAGACATGCTTTTCTCACCATGGTC
AGTGCGGTGAGCGGGTTCGTGCCCCTAGCCGTTCCTGTGGTTTCCCAGTC
ACAAAGGGCACCGTGGTGGACTGCAACACCTCGTGTAGCCCTTATCTTAG
TCGTTCTGGTGAGCCAAATTGGTTCAACACGGCACTAGCAGTACTCCCTA
GCTACGTGTTACGGTGCACGTCTCGCCGCGTAGTCAAGTTCGCTGTTTTT
GTTTATATCGTCAATCATCACTTTTTCGTGGTACGGCTCGCTAACGCAGT
TGAAAGACATGGAGGCCAAAATCGATGGCTGCAAGGACGCCTTCAATGAA
GAGATGGCCTTGCTAAACTCCCAGCTGGAGGAGGAGTGTGAAACTGGGCG
CCGAGACCAAGAGGAGCGGCGGAAGATCACGAAAAAGGCGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9258:6115..7005-

>mRNA_Ecto-sp8_S_contig9258.30676.1 ID=mRNA_Ecto-sp8_S_contig9258.30676.1|Name=mRNA_Ecto-sp8_S_contig9258.30676.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9258:6115..7005- (Ectocarpus species8 EcLAC_412)
CAGATACGGCTGGAGGAGAAACTGGCGACCCTCGACGTCAAGCTTACGGC
TATCAAAGAATACCAAGAAAACTCACAAATCTACGAGCAGACGTTGAAAG
ACATGGAGGCCAAAATCGATGGCTGCAAGGACGCCTTCAATGAAGAGATG
GCCTTGCTAAACTCCCAGCTGGAGGAGGAGTGTGAAACTGGGCGCCGAGA
CCAAGAGGAGCGGCGGAAGATCACGAAAAAGGCG
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