mRNA_Ecto-sp8_S_contig9255.30671.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9255.30671.1
Unique NamemRNA_Ecto-sp8_S_contig9255.30671.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9255.30671.1 vs. uniprot
Match: D8LRH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRH3_ECTSI)

HSP 1 Score: 755 bits (1949), Expect = 1.070e-252
Identity = 383/409 (93.64%), Postives = 386/409 (94.38%), Query Frame = 2 
Query: 1697 SVGGSAGRHSTPVMVFRAPQGRSLPQKCSEADVERALSAARFVPDRSSPTWGGGGPPLPPPLPLPTGSMPCMVGLFKVDETTGVHRCAGNWAMNKADLQAADKNRASPFEFRMVEGGGTGTGVVRFPHTGKYQGHFLVRQPPKPVSKVEEKDLHIAFVKNSEGGWNVEGQGNNVYGAFTITGRLSANRELEVYRAYRKVAKAHHRRASSTAGVGATPGKRPGGGGSSSTPGLHGPNRGKHFSPAAVGGTGTGFANGGGSAKAGDSGSETPAPPSRRVSRTPSKLINDIGNDGTTHLTHGLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEYKNTVEFAHEVRLVFSNACRYNSDETSDVHIAARHLLHVFDAKMEELGPGLDDP 2923
            S GGSAGRHSTP+MVFRAPQGRSLPQKCSEADVERALSAA FVPDRSSP WGGGGPPLPPPLPLPTGSMPCMVG FKVDE TGVHRCAGNWAMNKADLQAADKNRASPFEFRMVEGGG GTGVVRFPHTGKYQGHFLVRQPPKPVSKVEEKDLHIAFVKNSEGGWNVEGQGNNVYGAFTITGRLSANRELEVYRAYRKVAKA HRRASSTAG GA            STPGLHGPNRGKHFSPAAVGGTG  F++GGGSAKAGDSGSETPAPPSRRVSRTPSKLINDIGNDGTTHLTHGLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEYKNTVEFAHEVRLVFSNAC YNSDETSDVHIAARHLLHVFDAKMEELGPGLDDP
Sbjct:  401 SGGGSAGRHSTPLMVFRAPQGRSLPQKCSEADVERALSAAHFVPDRSSPAWGGGGPPLPPPLPLPTGSMPCMVGFFKVDEKTGVHRCAGNWAMNKADLQAADKNRASPFEFRMVEGGGAGTGVVRFPHTGKYQGHFLVRQPPKPVSKVEEKDLHIAFVKNSEGGWNVEGQGNNVYGAFTITGRLSANRELEVYRAYRKVAKAQHRRASSTAGAGAXXXXXXXXXXXXSTPGLHGPNRGKHFSPAAVGGTG--FSDGGGSAKAGDSGSETPAPPSRRVSRTPSKLINDIGNDGTTHLTHGLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEYKNTVEFAHEVRLVFSNACHYNSDETSDVHIAARHLLHVFDAKMEELGPGLDDP 807
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9255.30671.1 vs. uniprot
Match: A0A836CDK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDK9_9STRA)

HSP 1 Score: 192 bits (489), Expect = 2.050e-47
Identity = 149/400 (37.25%), Postives = 188/400 (47.00%), Query Frame = 2 
Query: 1871 PPPLPLPTGS--MPCMVGLFKVDETTGVHRCAGNWAMN-KADLQAADKNRASPFEFRMVEGGGTGTGVVRFPHTGKYQGHFLVRQPPKPVSKVEEKDLHIAFVKNSEGGWNVEGQGNNVYGAFTITGRLSANRELEVYRAYRKVAKAHHRRASSTAGVGATPGKRPGGGG-----------SSSTPGLHGPNRG------KHFSPAAVGGTGTGF----------ANGGGSAKAGDSGSETPAPPSRRVSRTPSKLINDIGNDGTTHLTHGLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSK---------LESGEYKNTVEFAHE---------------VRLVFSNACRYNSDETSDVHIAARHLLHVFDAKMEELGP 2908
            P P   PT +  +PCM G+  V+  TG H   G W M+ KA L   +    SPFEFR     G   G    P +G+Y  HF+VR P KP  KV E  + + F  NS GGWNVEG G N +G F + G L   R+LE+++ Y   A A    ++   G   TP KR    G           S+  P L  P  G      +  S      T  G           A  GG AK         AP  RR+SR PS L +D G      L  GLR+CV +L  +  ++  S WF +PVD V LNLP Y TI+KRPMDLGTVK+K         LE+GEY  + EFA +               VRL FSNA  + +D    VH+AAR L   F+ +   LGP
Sbjct:   72 PSPFEEPTANVPLPCMRGVLAVEANTGDHVVTGWWGMSSKAHLPGGE---TSPFEFRR----GARPGGEEVPASGEYAAHFMVRMPGKPADKVHENGMQLTFTVNSGGGWNVEGSGTNKFGPFNLLGTLDGQRQLELFKIYTIRAAAP---STQKTGKRPTPVKRRAATGISPPVATADATSTKAPMLPPPGVGXXXXXVRRASSFFDDSTSNGATQVPDEAQFEAPPGGDAKVAAGVGPDGAPLRRRISRLPSHLQDDRGQ---VRLPEGLRKCVNLLKQISTVKNLSHWFRDPVDPVALNLPTYLTIVKRPMDLGTVKAKRLSRIGSTHLEAGEYATSAEFAADXXXXXXXXXXXXXXXVRLTFSNALAFTADAKEPVHVAARELSAQFEQRFAALGP 458
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9255.30671.1 vs. uniprot
Match: A0A6U4KPS7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4KPS7_9STRA)

HSP 1 Score: 157 bits (396), Expect = 1.290e-35
Identity = 133/385 (34.55%), Postives = 180/385 (46.75%), Query Frame = 2 
Query: 1835 SSPTWGGG---GPPLPPPLPLPTGSMPCMVGLFKVDETTGVHRCAGNWAMNKADLQAADKNRASPFEFRMVEGGGTGTGVVRFPHTGKYQGHFLVRQP-PKPVSKVEEKDLHIAFVKNSEGGWNVEGQGNNVYGAFTITGRLSANRELEVYRAY----------RKVAKAHHRRASST----AGVGATPGKRPGGGGSSSTPGLHGPNRG-----------KHFSPAAVGGTGTGFANGGGSAKAGDSGSETPAPPSRRVSR---TPSKLINDIGNDGTTHLTHGLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEYKNTVEFAHEVRLVFSNACRYNSDETSDVHIAARHLLHVFDAKM 2893
            S+PT   G   GPP  PP   P  ++PCM G    D  +GVH CAG W M K           S FE+R              P  G Y G F+++QP PKP  KV+EKD+ + FVKNS GG NV G+G N +G FT++G L+A+  LE+YR Y           K   A  +++ S         AT G+ P GG   +TP     NRG           +   P A        A   G AK        P   + R  R   TPS L+     +     +  +++   ++  L      S WF   VD + L +P+Y  IIK+PMDLGTVK KL + EY++  +FA +VRL F NA  YN    + V IAA+ +   F+ K+
Sbjct:  138 STPTASAGDDEGPP--PPTAPPAFALPCMKGAMMSDPVSGVHVCAGMWGMTKE--AHGIPGHTSAFEYRHTPA----NQPQAVPSAGPYTGFFMLKQPAPKPPLKVDEKDVVLRFVKNSAGGHNVAGEGANRFGKFTVSGVLAADGNLEIYRMYVVNKGAGAAQAKTPAARKKKSLSVKAPETAPPATGGEGPAGG---ATPRSQRQNRGSWKDIAKASAPEPAKPKAKAARKGAVAKAKGGAKKALKQEAEPVLHANRTGRLRKTPSHLMELPEQEKRPRNSEEMKKAGVLMTALMK-DANSFWFAIAVDPIALKIPDYFDIIKKPMDLGTVKKKLTAHEYESIHDFADDVRLTFQNAMTYNVAAENPVRIAAKSMSTTFEQKL 510
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BLAST of mRNA_Ecto-sp8_S_contig9255.30671.1 vs. uniprot
Match: A0A7S2VH74_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VH74_9STRA)

HSP 1 Score: 114 bits (285), Expect = 7.040e-22
Identity = 114/366 (31.15%), Postives = 165/366 (45.08%), Query Frame = 2 
Query: 1916 GLFKVDETTGVHRCAGNWAMNKADLQAADKNRASPFEFRM-----VEGGGTGTGVVRFP-HTGKYQGHF-LVRQPPKPVS--KVEEKDLHIAFVKNSEGGWNVEGQGNNVYGAFTITGRLSANR----ELEVYRAYRKVAKAHHRRASSTAGVGATPGKRPGGGGSSSTPGLHGPNRGKHFSPAAVGGTGTGFANGGGSAKAGDSGSETPAPP--------SRRVSRTPSKLINDIGNDGTTHLTHGLRRCVTVLNNLRAIR-GKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEYKNTVEFAHEVRLVFSNACRYNSDETSDVHIAARHLLHVFDAKMEEL---------GPGLDD 2920
            G  +VD+  G H CAG WA+ +  L    +   SPF  R+      +  G+ +   +FP  +  Y+G F L +Q    V   K+ +K + + F  NS+G +NV G+G N  G FT+ G L AN     ++E+YR Y           S      + PG            G   P      S +A+     G A  G   K        P PP        S R+ + PSKL +D   D T  L   + +C  +L  +R     +  +F+EPVD V L +P Y  IIK PMDL T+ S++++    +  EF+  VRLVF NA ++N D    VH +AR LL +F  K  ++           GLDD
Sbjct:  577 GTLRVDKD-GSHSCAGKWAVTRDHLTT--EGLTSPFAVRLDTLHAQDAAGSDSTGGQFPLDSAMYKGSFQLKKQGVGRVHSHKIVDKQVVMKFRMNSQGFYNVYGKGVNEIGTFTLIGTLIANSKTAGQVELYRTY----------PSDLLNKSSPPG------------GKQAP------SSSAISSANAGAAEDGKFTKP-----LLPGPPPVGVTRRESSRLVKLPSKLEDD---DPTAQLARAMEKCSQLLRVMRESDITQGGFFSEPVDPVKLGIPTYFQIIKEPMDLKTIASRMDNRLIDSPEEFSRLVRLVFENAMKFNVDPAHSVHRSARMLLTLFTKKYRDIDRMVQQVRKAQGLDD 903
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BLAST of mRNA_Ecto-sp8_S_contig9255.30671.1 vs. uniprot
Match: A0A7S4N176_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N176_9STRA)

HSP 1 Score: 110 bits (276), Expect = 8.330e-21
Identity = 103/364 (28.30%), Postives = 156/364 (42.86%), Query Frame = 2 
Query: 1916 GLFKVDETTGVHRCAGNWAMNKADL-----------------QAADKNRASPFEFRMVEGGGTGT-GVVRFP-HTGKYQGHFLVRQPPKPVSKVEEKDLHIAFVKNSEGGWNVEGQGNNVYGAFTITGRL------SANRELEVYRAYRKVAKAHHRRASSTAGVGATPGKRPGGGGSSSTPGLHGPNRGKHFSPAAVGGTGTGFANGGGSAKAGDSGSETPAPP---------SRRVSRTPSKLINDIGNDGTTHLTHGLRRCVTVLNNLR-AIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEYKNTVEFAHEVRLVFSNACRYNSDETSDVHIAARHLLHVFDAKMEEL 2902
            G+ ++++  G H C+G WA+ +                    Q A +N        +       T G   FP  + +Y+G F +R+       + +  + + F KN +G +NV G+G N  G F + G L      + +  +E+YR Y                V ATP   PGG         +G     H  P  + G             +  + S  P PP         S R S+ P++L +D     T  +   + +C ++L  L    +    +F EPVD V   +P Y TII+ PMDLGT++SK+E GE +   EFA   RLVF NA  +N D T  VH AAR LL +F+ K  ++
Sbjct:  658 GVLRINDD-GAHTCSGKWAITREHYNNGETANFHFGLEAHHAQFAAENMLKSIGKEVTNPAPPATLGTTTFPVDSARYKGSFKMRRGSTKYQSIVDTQIVLRFQKNEQGTYNVHGKGVNAIGTFNLIGTLILSTPGAMSGHVELYRMY----------------VVATPAPPPGGKMLKKAVPTNG--AATHDGPTPMEGVTP--------TSSSPAPSSLPPPPQPASLVRRESSRQSKLPARLEDDDPKAKTARI---MEKCSSILKFLGDKDKQAGSFFAEPVDPVAHGIPTYHTIIRDPMDLGTLRSKMERGEVETPEEFARLARLVFENAVTFNVDTTHVVHQAARSLLILFNQKFRDV 991
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9255.30671.1 vs. uniprot
Match: A0A7S2XB31_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XB31_9EUKA)

HSP 1 Score: 97.4 bits (241), Expect = 1.000e-19
Identity = 54/118 (45.76%), Postives = 74/118 (62.71%), Query Frame = 2 
Query: 2561 GNDGTTHLTHGLRRCVTVLNNLRAIRGKSEW-FNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEYKNTVEFAHEVRLVFSNACRYNSDETSDVHIAARHLLHVFDAKMEELGPG 2911
            G  G +     L++  TVL NL  ++ +  W FNEPVD V L +P+Y  IIK PMDLGTVK +L+ G Y +  +FA +VRLVF+NA R+N  +T DVH  A  +  VF+ K  ++ PG
Sbjct:   43 GRGGKSPAERALQQSKTVLKNL--MKHRHAWVFNEPVDPVKLGIPQYFEIIKHPMDLGTVKKRLDRGYYTDVSQFAEDVRLVFNNAQRFNKPQT-DVHKMAGIVREVFEQKYAKINPG 157
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9255.30671.1 vs. uniprot
Match: A0A7S2ANP6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ANP6_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.130e-19
Identity = 52/125 (41.60%), Postives = 80/125 (64.00%), Query Frame = 2 
Query: 2522 RVSRTPSKLIN--DIGNDGTTHLTHGLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEYKNTVEFAHEVRLVFSNACRYNSDETSDVHIAARHLLHVFDAK 2890
            R+ R PS L +  D+G DG   L   +R+C+ V+  +R+ +  + WFN+PVD + L +PEY+ ++K PMDLGTVK+ +ESG+     +F   V LVF NA  +N +  + V+IAAR L  VF+++
Sbjct:  554 RMRRIPSYLQDNDDLGTDGKVRLNEHMRKCLQVIRYMRS-QPNAHWFNDPVDPIALGIPEYSNVVKNPMDLGTVKNNIESGKMTKVDDFKAAVLLVFKNALTFNKERDNAVNIAARGLQTVFESR 677
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9255.30671.1 vs. uniprot
Match: A0A7N1A3F2_KALFE (Uncharacterized protein n=4 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N1A3F2_KALFE)

HSP 1 Score: 101 bits (251), Expect = 4.610e-18
Identity = 53/108 (49.07%), Postives = 75/108 (69.44%), Query Frame = 2 
Query: 2594 LRRCVTVLNNLRAIRGKSEW-FNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEYKNTVEFAHEVRLVFSNACRYNSDETSDVHIAARHLLHVFDAKMEELGPGL 2914
            L++C+T+L+ L +   +  W FN+PVD   LN+P+Y T+IK+PMDLGTVK +L SGEY N V FA++VRL FSNA  YN    SDVHI A  L  +F+++ +++   L
Sbjct:  200 LKQCLTLLDRLMS--HQYGWVFNDPVDAEKLNIPDYHTVIKQPMDLGTVKRRLTSGEYSNLVNFANDVRLTFSNAMTYNP-RGSDVHIMAETLSKIFESRWKQIAKKL 304
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9255.30671.1 vs. uniprot
Match: I1MEZ0_SOYBN (Bromo domain-containing protein n=3 Tax=Glycine subgen. Soja TaxID=1462606 RepID=I1MEZ0_SOYBN)

HSP 1 Score: 99.8 bits (247), Expect = 7.880e-18
Identity = 51/105 (48.57%), Postives = 71/105 (67.62%), Query Frame = 2 
Query: 2591 GLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEYKNTVEFAHEVRLVFSNACRYNSDETSDVHIAARHLLHVFDAKMEELG 2905
            G  +C T+L +L +    S  F++PVD + L++P+Y TII  PMDLGT+KSKLE   Y  T EFA +VRL FSNA +YN   ++DVH+ A+ L  +FD K ++LG
Sbjct:   79 GSMQCATILKSLMS-HTYSWVFSKPVDPIALSIPDYFTIISHPMDLGTIKSKLEKNIYSGTEEFAADVRLTFSNAMKYNPP-SNDVHLMAKELSKIFDRKWKDLG 181
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9255.30671.1 vs. uniprot
Match: A0A444WWU0_ARAHY (Bromo domain-containing protein n=2 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444WWU0_ARAHY)

HSP 1 Score: 95.9 bits (237), Expect = 1.250e-17
Identity = 53/105 (50.48%), Postives = 68/105 (64.76%), Query Frame = 2 
Query: 2591 GLRRCVTVLNNLRAIRGKSEW-FNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEYKNTVEFAHEVRLVFSNACRYNSDETSDVHIAARHLLHVFDAKMEEL 2902
            G   C TVL +L + R    W F++PVD V LN+P+Y TII  PMDLGT+KSKLE   Y +  EFA +VRL FSNA  YN    +DVH+ A+ L  VF+ K ++L
Sbjct:   80 GSSHCSTVLKSLTSHR--YSWVFSKPVDPVALNIPDYFTIISEPMDLGTIKSKLEKNIYSSIEEFATDVRLTFSNAMTYNPPN-NDVHLMAKELSKVFEKKWKDL 181
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9255.30671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRH3_ECTSI1.070e-25293.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CDK9_9STRA2.050e-4737.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U4KPS7_9STRA1.290e-3534.55Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2VH74_9STRA7.040e-2231.15Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S4N176_9STRA8.330e-2128.30Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]
A0A7S2XB31_9EUKA1.000e-1945.76Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S2ANP6_9STRA2.130e-1941.60Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7N1A3F2_KALFE4.610e-1849.07Uncharacterized protein n=4 Tax=Kalanchoe fedtsche... [more]
I1MEZ0_SOYBN7.880e-1848.57Bromo domain-containing protein n=3 Tax=Glycine su... [more]
A0A444WWU0_ARAHY1.250e-1750.48Bromo domain-containing protein n=2 Tax=Arachis hy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9255contigEcto-sp8_S_contig9255:1759..6745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score762.7
Seed ortholog evalue1.4e-217
Seed eggNOG ortholog2880.D8LRH3
Model size3304
KEGG koko:K11684
Hectar predicted targeting categorysignal peptide
Exons4
EggNOG free text desc.acetylation-dependent protein binding
EggNOG OGsCOG5076@1,KOG1474@2759
Ec32 ortholog descriptionBromodomain and extraterminal protein
Ec32 orthologEc-18_004520.1
Cds size1971
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145278.7013438-UTR-Ecto-sp8_S_contig9255:1758..23891681145278.7013438-UTR-Ecto-sp8_S_contig9255:1758..2389Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9255 1759..2389 +
1681145278.718462-UTR-Ecto-sp8_S_contig9255:3258..39601681145278.718462-UTR-Ecto-sp8_S_contig9255:3258..3960Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9255 3259..3960 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145278.7329252-CDS-Ecto-sp8_S_contig9255:3960..53941681145278.7329252-CDS-Ecto-sp8_S_contig9255:3960..5394Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9255 3961..5394 +
1681145278.7442641-CDS-Ecto-sp8_S_contig9255:6130..66161681145278.7442641-CDS-Ecto-sp8_S_contig9255:6130..6616Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9255 6131..6616 +
1681145278.7543864-CDS-Ecto-sp8_S_contig9255:6694..67451681145278.7543864-CDS-Ecto-sp8_S_contig9255:6694..6745Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9255 6695..6745 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9255.30671.1prot_Ecto-sp8_S_contig9255.30671.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9255 3961..6745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9255.30671.1

>prot_Ecto-sp8_S_contig9255.30671.1 ID=prot_Ecto-sp8_S_contig9255.30671.1|Name=mRNA_Ecto-sp8_S_contig9255.30671.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=657bp
MAAAAAAAALATVAAPAAAPAPAPAAAVAARNASSSPAASSPRQEVDEHA
ARASDAATAALAAALASATRSSPTPRPARASPPSKSPVPSQQQLLPKVEE
RGTAEAAAAVGAGESAAGAGRSVGGSAGRHSTPVMVFRAPQGRSLPQKCS
EADVERALSAARFVPDRSSPTWGGGGPPLPPPLPLPTGSMPCMVGLFKVD
ETTGVHRCAGNWAMNKADLQAADKNRASPFEFRMVEGGGTGTGVVRFPHT
GKYQGHFLVRQPPKPVSKVEEKDLHIAFVKNSEGGWNVEGQGNNVYGAFT
ITGRLSANRELEVYRAYRKVAKAHHRRASSTAGVGATPGKRPGGGGSSST
PGLHGPNRGKHFSPAAVGGTGTGFANGGGSAKAGDSGSETPAPPSRRVSR
TPSKLINDIGNDGTTHLTHGLRRCVTVLNNLRAIRGKSEWFNEPVDYVGL
NLPEYTTIIKRPMDLGTVKSKLESGEYKNTVEFAHEVRLVFSNACRYNSD
ETSDVHIAARHLLHVFDAKMEELGPGLDDPPSKRKKSGGGGGGGGGGGSS
SSNSNNHHPYSSSTGGAGNLGGSDDSDEEMPDRDRKRKSSDGGGAHGGDG
GGGGGGSTSKKARAPSKAERAQPKPEPPPPVAPPPAPAPTLALMQGGVGV
PPPPPPP
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mRNA from alignment at Ecto-sp8_S_contig9255:1759..6745+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9255.30671.1 ID=mRNA_Ecto-sp8_S_contig9255.30671.1|Name=mRNA_Ecto-sp8_S_contig9255.30671.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4987bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9255:1759..6745+ (Ectocarpus species8 EcLAC_412)
AAAAAACATCTTCATTTGAGAGTAGGCGGGAATAATTCCCCCCGGGAGGA
GGTAAAAAAAAAAAAAAAGCGTGGCGTGACGCCCGGGAAGCGTGTGGGCC
TGCTGCGGCGACGGCTACCGAGAGCGCTCGACGCCCGTGATCCGGAGGAC
TTCTCCTGTGTCCCCGCTGTTGCGGATCGGCCCGTTTCTATTATTTTTGC
GGCGAGGCGCCTTCATTTTCGAGTCAAGACTCATCGGGGGCAGTTTGGGG
CGTTTCTGAGAGAGTGGGGCCGAAATCCCCCGTTCATTTTGTCAGTCACT
TTGATTTTGGGGTTGTTTTTCGACCAGAGCGCCACAAAATTTGGGTCGGG
TCTCTCGGCTCGAGGCGCGTTGATCCCCCCGGTGCAGAGGGAACGCGGGA
GACACCCTGGTTCGGAACGAGGGACCGGCCGTGCCATCGGAGTGATCGAC
TCTCGCGTGACACGGTCTAGAGCGGCGAGCACTTTTGTCTCTTCCTGGTC
GGTGTTGGGCGTGCGCTGGTGATGGCGGCGACCTCAGCTTGGGGACTCGG
GACGCATAAGATGACCGCCGACTTGTCGGCGTCGACTCCCGTAGCCAATT
CCTCAACTGAATCGCCAATAAAGGCGAAGAGGTGAGCCCCAGCGCCTGGT
ACTCTGCCATCCATCCAGCTCACGCGCGGAAGCGCCCAAGCTGGCCTCTG
TTTTTCCTTTGTCTGCGTGCTTTTTGCACGGTGTTTTGTGTCTCGTCTGT
TTTTTTGGGCGACGCGGAGCGGTTCCTTGTTGAGTGTTGACCTCTTTTTA
GGCGCAGAGAGAGACACACAGCAGTGAGCGCGAGAACCGTAGGCTGGCGG
CAACACGTGACACTGCGATGGCAACGGTTTATCTACCACCTCCGTTGTTG
ACTCATCCTTGTTCTTCAAGATGAAGAGTGCTTGTCTCGTTGGCGTGGGC
GTTGGTTCACTGCTGTCCTAGACACGACGGGCTAGCAGCCGTGGCGTCTC
GCACAAATTCTCGGCTTCACTGATTTTTGCCAGCCGAGCGCCGAGAGTCG
GTTTCCTCCTTTCGGAAAAGAGAGCCAAGAAAAGTACTCGCCGTACTCTG
CTACTGCTGTCGCCTCCCGCGATCTCCCGACATATCTTGTCTTGTCTGTT
TTCACGCCCTTCACTACAGAAGACTGCCTGATTGGTTTGATCAAGCACAC
AATACCAGCGATCACGTTGTACTTTTCGGACGTTTCGCGCTCCTTCCCCC
CACACACCATCGGTTGCTTAGCCTGTTTTTTGAAAACTGAAAACTGCAGC
CGGGTGCCTTTTTTTTTCAAACAGCAGCCATGCGACGCTTATGATAGCCG
TTACCGCCAGCGCCTCTTGATCGGTTATGTACCTAATATGGTGGTGCTCG
TTACCTTACCTCTGCATCCAAACACGCACACACACACACATGGGTTGATG
ATCTCGCCTGAAAGAAATCAACCCGTTCCTCTATCGCTCGCTACCGGCAG
CTTCGGCATGGTAGAAGGCGCCACCACCGCCCCCAGCGCTTCAAACGGCA
CCACAGCGGTTAGCTCGCCATCCGCAGCAGCTGCAGCTTCCGCGGTCACG
GCGGCAAACCGCAGCACCACGAACAACGCCTCCGCGGCCGCGGCCTCTAA
CGGGGCGGATCGGGTACCGGCGTCCGCGGGGGAAGTCGGCGCGGCGGGGC
AGGGGGAGGAGGAAGCTTCGGAGGTGGCGGCCGGGACAAGCTCGGACTCG
GGAGATGACGAGGAGGAGGAGGAGGACCAGGGGAGGGGAGGTTCTACCGT
TTCCAAACCGAGCACACCAGTAGCTGTGGGGGGAGAGGCGGAGGGGTGTG
GGAGTAGGGAGGAGGAGCAGGAGGGGCCAAAGGAGGCGTTGAGTACGGAG
GAAGCTGGTGGAGAAAAGCCGGCGGCGAAGGCAACCGTCAAGGACAAAGA
ACCGCCGAAGGAGGACGAGGGAGAATCGAAGGGAGAGGAGCCGGAGGTGG
AGGGGTCAGAGTCAAAGGAGGAGCTTGCAAAGGAGGTGGGGGCGAAGGAA
GAGCTTGCAGCAAAGGAGGGGGGCGCAAAATCGAAGGAGAAGGCGACAAC
AGCAGAATCTAGCGCGACTAAGGAGACGACGGCGGCAGTGAATGGGAATG
GGCCGGTGGAGAGCAACGGTGGCCACAGTCCGCTGCCGCCGCTGCTGCCG
CTATGGCCGCCGCTGCCGCTGCCGCCGCTCTCGCCACCGTTGCTGCTCCC
GCCGCGGCCCCGGCCCCGGCCCCGGCGGCGGCGGTGGCGGCGCGTAACGC
CTCCTCGTCTCCAGCGGCTTCTTCTCCACGGCAAGAAGTGGACGAGCACG
CGGCTCGAGCTTCGGATGCTGCCACGGCGGCGCTAGCGGCGGCGCTCGCG
TCCGCTACGAGGAGTTCGCCGACGCCCCGCCCCGCTCGCGCCTCGCCACC
GTCCAAGTCGCCCGTCCCTTCCCAGCAGCAGTTGTTGCCGAAGGTGGAGG
AACGGGGTACGGCGGAGGCGGCGGCGGCTGTCGGGGCGGGTGAATCGGCG
GCCGGGGCGGGGAGAAGCGTAGGAGGGTCAGCGGGGAGGCACTCCACTCC
GGTGATGGTGTTTCGCGCGCCGCAGGGGCGAAGCTTGCCGCAAAAGTGCA
GCGAGGCGGACGTGGAACGCGCGTTGTCTGCCGCGCGCTTCGTTCCGGAT
CGATCGTCGCCGACCTGGGGCGGCGGCGGGCCTCCTCTGCCGCCGCCGTT
GCCGCTACCGACCGGATCGATGCCCTGCATGGTGGGGCTCTTCAAGGTCG
ACGAGACGACGGGAGTGCACCGGTGCGCGGGCAACTGGGCGATGAACAAG
GCGGACCTGCAGGCTGCCGATAAGAACCGCGCGAGCCCGTTCGAGTTCAG
GATGGTGGAAGGGGGCGGCACGGGGACGGGGGTGGTACGATTTCCGCACA
CCGGGAAATACCAGGGGCACTTCTTGGTGCGACAACCGCCCAAGCCGGTG
TCCAAGGTGGAGGAAAAGGACCTCCACATCGCGTTCGTCAAGAACTCGGA
GGGCGGCTGGAACGTGGAGGGACAGGGGAACAATGTGTACGGAGCGTTCA
CCATCACCGGCCGCCTCAGCGCCAACCGAGAGCTAGAGGTCTACCGAGCC
TACCGGAAGGTCGCGAAGGCGCACCACCGGCGCGCGAGCAGCACGGCGGG
GGTGGGGGCTACGCCGGGGAAAAGACCAGGGGGGGGGGGGTCGAGCAGCA
CGCCCGGCCTGCACGGGCCGAACCGAGGGAAGCACTTTTCGCCGGCCGCG
GTAGGGGGTACTGGTACTGGTTTTGCTAACGGCGGGGGGTCGGCCAAGGC
GGGTGACTCGGGGTCGGAGACGCCGGCACCCCCTAGCCGGAGAGTGAGCC
GCACGCCGTCGAAGCTGATCAACGACATCGGCAATGACGGCACGACGCAC
CTCACTCACGGGCTCCGGCGTTGTGTGACGGTGTTGAACAATTTGCGGGC
TATCCGAGGGAAGAGCGAGTGGTTCAACGAGCCGGTGGACTACGTCGGGC
TCAACCTGCCGGAGTACACCACGATTATCAAGCGGCCGATGGATCTTGGC
ACCGTGAAATCAAAGCTGGAGAGCGGAGAGTACAAGGTACGGCCTTTTGG
ATGGTTTGACTGGGTGTTGTTTCTTGTGCTGGTGCCTCTCCAGTTGGATC
ACGAGGTAGCTTGATGTTTGGTTTCGTTACGGCACATGTTATCGTGAATC
GTGGCTTCGGTTGACGAGAGAACCGTTGTGCTGTGGAGTGCGTTTTGACA
TAGCAGAACCATGCCTCTCGTAAGAAAAATATGTTTCAAGAAGTTCGGGC
TGGAAGTAGGAGGTGTAGAGCTCTAATGCGCGAGTGCCTCGTGCGATGCC
AGTGATGGACGCCCCCCCCTCCCTCTCCGGGACTCAACTCTGATCCTTGA
TTTGTGCTTGTCCAACAAAGTACCGCTGCTACGGCGGTGGTATCCAGACT
GCGACGTGTACTGTAGGGGGTGCACAGTTGCGCGCCCGCGCCGGGGATTT
GCGATTTTCGTGAGCTTTCATGGCCGTATGTTGTCGTGCACATCCGGCGC
GCGACAGCGGTCGTTCACCGGTGACCGAACCAAATGAATGTCAGTGTCGT
GCGGCTGGATGACCACCCTTCTGCACCGCGATCCATGCCCGCCTTCCTCT
TGTTGAACGCAGCTGAGCGATTTTCGCCTTTGGGGCTGGTAAACGTATTG
TAGACCTTTCGTGCTTCCGTGTCTCGCATTTCCTCTCGTTTTTTTTTGTT
GATTGAGATTCTGAAGCGACCACCCCCAACCGTGTGCCCCCCGCCACTGT
TTTCTGCTGCTTCTGCTTGCAGAACACGGTCGAGTTCGCCCACGAAGTCC
GTCTTGTTTTCAGCAACGCCTGTCGCTACAACTCCGACGAGACGAGCGAT
GTCCACATTGCTGCGCGGCACCTGTTGCACGTGTTCGATGCCAAGATGGA
GGAGCTCGGGCCGGGCCTAGACGACCCTCCTTCGAAGCGAAAAAAGTCGG
GTGGAGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCAGCAGCAGCAACAGC
AACAACCACCACCCGTACAGCAGTAGCACAGGAGGCGCTGGCAACTTGGG
CGGTTCCGACGACAGCGATGAGGAGATGCCGGACCGGGATAGGAAGCGCA
AGAGTTCGGACGGGGGCGGTGCTCATGGAGGGGACGGGGGCGGCGGCGGC
GGCGGATCCACGAGCAAGAAGGCCCGGGCCCCTTCGAAGGCGGAACGGGC
GCAACCTAAGCCGGAGCCGCCGCCGCCGGTGGCGCCTCCGCCCGCTCCGG
CCCCCACCGTGACCCCGGTCGCTGACCCGCAGCACCAGCAGCAGGTCTTG
ATGATGCAGCGCCAGATCACCCAGATGCAGGAGCAGCTTGCCTTGATGCA
AGGAGGGGTGGGGGTTCCGCCGCCGCCGCCGCCACCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9255:1759..6745+

>mRNA_Ecto-sp8_S_contig9255.30671.1 ID=mRNA_Ecto-sp8_S_contig9255.30671.1|Name=mRNA_Ecto-sp8_S_contig9255.30671.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1971bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9255:1759..6745+ (Ectocarpus species8 EcLAC_412)
ATGGCCGCCGCTGCCGCTGCCGCCGCTCTCGCCACCGTTGCTGCTCCCGC
CGCGGCCCCGGCCCCGGCCCCGGCGGCGGCGGTGGCGGCGCGTAACGCCT
CCTCGTCTCCAGCGGCTTCTTCTCCACGGCAAGAAGTGGACGAGCACGCG
GCTCGAGCTTCGGATGCTGCCACGGCGGCGCTAGCGGCGGCGCTCGCGTC
CGCTACGAGGAGTTCGCCGACGCCCCGCCCCGCTCGCGCCTCGCCACCGT
CCAAGTCGCCCGTCCCTTCCCAGCAGCAGTTGTTGCCGAAGGTGGAGGAA
CGGGGTACGGCGGAGGCGGCGGCGGCTGTCGGGGCGGGTGAATCGGCGGC
CGGGGCGGGGAGAAGCGTAGGAGGGTCAGCGGGGAGGCACTCCACTCCGG
TGATGGTGTTTCGCGCGCCGCAGGGGCGAAGCTTGCCGCAAAAGTGCAGC
GAGGCGGACGTGGAACGCGCGTTGTCTGCCGCGCGCTTCGTTCCGGATCG
ATCGTCGCCGACCTGGGGCGGCGGCGGGCCTCCTCTGCCGCCGCCGTTGC
CGCTACCGACCGGATCGATGCCCTGCATGGTGGGGCTCTTCAAGGTCGAC
GAGACGACGGGAGTGCACCGGTGCGCGGGCAACTGGGCGATGAACAAGGC
GGACCTGCAGGCTGCCGATAAGAACCGCGCGAGCCCGTTCGAGTTCAGGA
TGGTGGAAGGGGGCGGCACGGGGACGGGGGTGGTACGATTTCCGCACACC
GGGAAATACCAGGGGCACTTCTTGGTGCGACAACCGCCCAAGCCGGTGTC
CAAGGTGGAGGAAAAGGACCTCCACATCGCGTTCGTCAAGAACTCGGAGG
GCGGCTGGAACGTGGAGGGACAGGGGAACAATGTGTACGGAGCGTTCACC
ATCACCGGCCGCCTCAGCGCCAACCGAGAGCTAGAGGTCTACCGAGCCTA
CCGGAAGGTCGCGAAGGCGCACCACCGGCGCGCGAGCAGCACGGCGGGGG
TGGGGGCTACGCCGGGGAAAAGACCAGGGGGGGGGGGGTCGAGCAGCACG
CCCGGCCTGCACGGGCCGAACCGAGGGAAGCACTTTTCGCCGGCCGCGGT
AGGGGGTACTGGTACTGGTTTTGCTAACGGCGGGGGGTCGGCCAAGGCGG
GTGACTCGGGGTCGGAGACGCCGGCACCCCCTAGCCGGAGAGTGAGCCGC
ACGCCGTCGAAGCTGATCAACGACATCGGCAATGACGGCACGACGCACCT
CACTCACGGGCTCCGGCGTTGTGTGACGGTGTTGAACAATTTGCGGGCTA
TCCGAGGGAAGAGCGAGTGGTTCAACGAGCCGGTGGACTACGTCGGGCTC
AACCTGCCGGAGTACACCACGATTATCAAGCGGCCGATGGATCTTGGCAC
CGTGAAATCAAAGCTGGAGAGCGGAGAGTACAAGAACACGGTCGAGTTCG
CCCACGAAGTCCGTCTTGTTTTCAGCAACGCCTGTCGCTACAACTCCGAC
GAGACGAGCGATGTCCACATTGCTGCGCGGCACCTGTTGCACGTGTTCGA
TGCCAAGATGGAGGAGCTCGGGCCGGGCCTAGACGACCCTCCTTCGAAGC
GAAAAAAGTCGGGTGGAGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCAGC
AGCAGCAACAGCAACAACCACCACCCGTACAGCAGTAGCACAGGAGGCGC
TGGCAACTTGGGCGGTTCCGACGACAGCGATGAGGAGATGCCGGACCGGG
ATAGGAAGCGCAAGAGTTCGGACGGGGGCGGTGCTCATGGAGGGGACGGG
GGCGGCGGCGGCGGCGGATCCACGAGCAAGAAGGCCCGGGCCCCTTCGAA
GGCGGAACGGGCGCAACCTAAGCCGGAGCCGCCGCCGCCGGTGGCGCCTC
CGCCCGCTCCGGCCCCCACCCTTGCCTTGATGCAAGGAGGGGTGGGGGTT
CCGCCGCCGCCGCCGCCACCC
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