mRNA_Ecto-sp8_S_contig92522.30668.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig92522.30668.1
Unique NamemRNA_Ecto-sp8_S_contig92522.30668.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig92522.30668.1 vs. uniprot
Match: D8LS47_ECTSI (Predicted methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS47_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 5.630e-32
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 1
Query:    1 KLVKDFDDGEFAAIIHDPPARALCKTTDMYGAAFYKDLARVLKPGGTLFHYIGNPES 171
            +LVKDFDDGEFAAIIHDPPARALCKTTDMYGAAFYKDLARVLKPGGTLFHYIGNPES
Sbjct:  301 ELVKDFDDGEFAAIIHDPPARALCKTTDMYGAAFYKDLARVLKPGGTLFHYIGNPES 357          
BLAST of mRNA_Ecto-sp8_S_contig92522.30668.1 vs. uniprot
Match: A0A7S4DCZ9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCZ9_HETAK)

HSP 1 Score: 91.7 bits (226), Expect = 2.020e-20
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 1
Query:    1 KLVKDFDDGEFAAIIHDPPARALCKTTDMYGAAFYKDLARVLKPGGTLFHYIGNPESK 174
            +++K F    F+ IIHDPPARALCK +DMYG AFY DL RVL+PG TLFHYIGNP SK
Sbjct:  312 EVIKSFPANHFSGIIHDPPARALCKASDMYGQAFYDDLWRVLRPGATLFHYIGNPASK 369          
BLAST of mRNA_Ecto-sp8_S_contig92522.30668.1 vs. uniprot
Match: A0A7R9U1D7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1D7_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.800e-17
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1
Query:    1 KLVKDFDDGEFAAIIHDPPARALCKTTDMYGAAFYKDLARVLKPGGTLFHYIGNPESK 174
            ++V    D +F+AIIHDPPA ALCK TD+Y  +FY+ L RVLK GG +FHYIGNP+SK
Sbjct:  261 EIVTSLADEQFSAIIHDPPALALCKDTDLYSLSFYEQLRRVLKRGGKIFHYIGNPDSK 318          
BLAST of mRNA_Ecto-sp8_S_contig92522.30668.1 vs. uniprot
Match: A0A0G4FLZ1_VITBC (Methyltransf_25 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FLZ1_VITBC)

HSP 1 Score: 78.6 bits (192), Expect = 1.290e-15
Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 1
Query:    1 KLVKDFDDGEFAAIIHDPPARALCKTTDMYGAAFYKDLARVLKPGGTLFHYIGNPESK 174
            +L+ +  D  F+ +IHDPPARALCK  D++G  FY +L RVL+ GG LFHY+GNP+ +
Sbjct:  370 ELITELPDESFSVVIHDPPARALCKEGDLFGEVFYSELYRVLRRGGRLFHYLGNPDGR 427          
BLAST of mRNA_Ecto-sp8_S_contig92522.30668.1 vs. uniprot
Match: F6BEQ3_METIK (Methyltransferase type 11 n=1 Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) TaxID=880724 RepID=F6BEQ3_METIK)

HSP 1 Score: 72.4 bits (176), Expect = 9.030e-14
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    4 LVKDFDDGEFAAIIHDPPARALCKTTDMYGAAFYKDLARVLKPGGTLFHYIGNPESK 174
            +VK+F+DG F AI+HDPP  +L    ++Y   FY++L R+LKPGG LFHY+GNP  K
Sbjct:  186 VVKEFEDGTFDAIVHDPPRFSLAG--ELYSEEFYRELYRILKPGGRLFHYVGNPGKK 240          
BLAST of mRNA_Ecto-sp8_S_contig92522.30668.1 vs. uniprot
Match: A0A160VS32_9EURY (Methyltransf_25 domain-containing protein n=1 Tax=Thermococcus chitonophagus TaxID=54262 RepID=A0A160VS32_9EURY)

HSP 1 Score: 70.9 bits (172), Expect = 3.460e-13
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 1
Query:    1 KLVKDFDDGEFAAIIHDPPARALCKTTDMYGAAFYKDLARVLKPGGTLFHYIGNPESK 174
            +++K F+D EF  IIHDPP  +L    ++Y   FYK+L RVLKPGG LFHY+GNP  K
Sbjct:  185 EVIKKFEDEEFNVIIHDPPRFSLAG--ELYSEKFYKELYRVLKPGGRLFHYVGNPGKK 240          
BLAST of mRNA_Ecto-sp8_S_contig92522.30668.1 vs. uniprot
Match: A0A3M2A9P9_9CHLR (Methyltransferase domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M2A9P9_9CHLR)

HSP 1 Score: 70.5 bits (171), Expect = 5.080e-13
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 1
Query:    4 LVKDFDDGEFAAIIHDPPARALCKTTDMYGAAFYKDLARVLKPGGTLFHYIGNPESK 174
            +V +F+DG F+ IIHDPP  +L    D+Y   FY+ L R+LKP G LFHY+G+PESK
Sbjct:  196 VVAEFEDGRFSRIIHDPPVFSLAG--DLYATDFYRQLYRILKPKGRLFHYVGDPESK 250          
BLAST of mRNA_Ecto-sp8_S_contig92522.30668.1 vs. uniprot
Match: A0A218PCG7_9EURY (Methyltransf_11 domain-containing protein n=1 Tax=Thermococcus sp. P6 TaxID=122420 RepID=A0A218PCG7_9EURY)

HSP 1 Score: 69.7 bits (169), Expect = 9.640e-13
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    1 KLVKDFDDGEFAAIIHDPPARALCKTTDMYGAAFYKDLARVLKPGGTLFHYIGNP 165
            ++VK F DG F A+IHDPP  +L     +Y  +FY++L R+LKPGG LFHY+GNP
Sbjct:  187 EIVKRFGDGSFDAVIHDPPRFSLAG--QLYSESFYRELYRILKPGGRLFHYVGNP 239          
BLAST of mRNA_Ecto-sp8_S_contig92522.30668.1 vs. uniprot
Match: H1KZ39_9EURY (Methyltransferase type 11 n=1 Tax=Methanotorris formicicus Mc-S-70 TaxID=647171 RepID=H1KZ39_9EURY)

HSP 1 Score: 69.3 bits (168), Expect = 1.270e-12
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 1
Query:    4 LVKDFDDGEFAAIIHDPPARALCKTTDMYGAAFYKDLARVLKPGGTLFHYIGNPESK 174
            +VK+F+D  F AI+HDPP  +L    ++Y   FY++L R+LKPGG LFHY+GNP  K
Sbjct:  186 VVKEFEDERFDAIVHDPPRFSLAG--ELYSEEFYRELYRILKPGGRLFHYVGNPGRK 240          
BLAST of mRNA_Ecto-sp8_S_contig92522.30668.1 vs. uniprot
Match: UPI000299EDEC (methyltransferase domain-containing protein n=1 Tax=Thermococcus zilligii TaxID=54076 RepID=UPI000299EDEC)

HSP 1 Score: 69.3 bits (168), Expect = 1.390e-12
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 1
Query:    1 KLVKDFDDGEFAAIIHDPPARALCKTTDMYGAAFYKDLARVLKPGGTLFHYIGNPESK 174
            ++VK F DG F  +IHDPP  +L    ++Y   FY++L RVLKPGG LFHY+GNP  K
Sbjct:  188 EVVKRFKDGSFDVVIHDPPRFSLAG--ELYSEEFYRELFRVLKPGGRLFHYVGNPGKK 243          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig92522.30668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS47_ECTSI5.630e-3298.25Predicted methyltransferase n=1 Tax=Ectocarpus sil... [more]
A0A7S4DCZ9_HETAK2.020e-2068.97Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9U1D7_9STRA1.800e-1762.07Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A0G4FLZ1_VITBC1.290e-1553.45Methyltransf_25 domain-containing protein n=2 Tax=... [more]
F6BEQ3_METIK9.030e-1454.39Methyltransferase type 11 n=1 Tax=Methanotorris ig... [more]
A0A160VS32_9EURY3.460e-1355.17Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A3M2A9P9_9CHLR5.080e-1354.39Methyltransferase domain-containing protein n=1 Ta... [more]
A0A218PCG7_9EURY9.640e-1354.55Methyltransf_11 domain-containing protein n=1 Tax=... [more]
H1KZ39_9EURY1.270e-1252.63Methyltransferase type 11 n=1 Tax=Methanotorris fo... [more]
UPI000299EDEC1.390e-1253.45methyltransferase domain-containing protein n=1 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig92522contigEcto-sp8_S_contig92522:290..466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score123.6
Seed ortholog evalue3e-26
Seed eggNOG ortholog2880.D8LS47
Model size177
KEGG koko:K06983
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.Pfam:Methyltransf_26
EggNOG OGs2S1AS@2759,COG2521@1
Cds size177
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145278.473225-CDS-Ecto-sp8_S_contig92522:289..4661681145278.473225-CDS-Ecto-sp8_S_contig92522:289..466Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig92522 290..466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig92522.30668.1prot_Ecto-sp8_S_contig92522.30668.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig92522 290..466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig92522.30668.1

>prot_Ecto-sp8_S_contig92522.30668.1 ID=prot_Ecto-sp8_S_contig92522.30668.1|Name=mRNA_Ecto-sp8_S_contig92522.30668.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=59bp
KLVKDFDDGEFAAIIHDPPARALCKTTDMYGAAFYKDLARVLKPGGTLFH
YIGNPESK*
back to top

mRNA from alignment at Ecto-sp8_S_contig92522:290..466-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig92522.30668.1 ID=mRNA_Ecto-sp8_S_contig92522.30668.1|Name=mRNA_Ecto-sp8_S_contig92522.30668.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=177bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92522:290..466- (Ectocarpus species8 EcLAC_412)
AAGCTCGTCAAAGATTTCGATGATGGCGAGTTCGCGGCCATCATCCACGA CCCGCCGGCCCGCGCCCTCTGCAAGACCACGGACATGTACGGGGCCGCTT TCTACAAGGACCTCGCGAGGGTACTCAAGCCGGGTGGCACCTTGTTCCAC TACATCGGGAACCCGGAGAGCAAGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig92522:290..466-

>mRNA_Ecto-sp8_S_contig92522.30668.1 ID=mRNA_Ecto-sp8_S_contig92522.30668.1|Name=mRNA_Ecto-sp8_S_contig92522.30668.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92522:290..466- (Ectocarpus species8 EcLAC_412)
AAGCTCGTCAAAGATTTCGATGATGGCGAGTTCGCGGCCATCATCCACGA
CCCGCCGGCCCGCGCCCTCTGCAAGACCACGGACATGTACGGGGCCGCTT
TCTACAAGGACCTCGCGAGGGTACTCAAGCCGGGTGGCACCTTGTTCCAC
TACATCGGGAACCCGGAGAGCAAGTGA
back to top