mRNA_Ecto-sp8_S_contig925.30661.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig925.30661.1
Unique NamemRNA_Ecto-sp8_S_contig925.30661.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig925.30661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig925contigEcto-sp8_S_contig925:14963..15674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size291
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-04_002120.1
Cds size291
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145278.1379163-CDS-Ecto-sp8_S_contig925:14962..151041681145278.1379163-CDS-Ecto-sp8_S_contig925:14962..15104Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig925 14963..15104 +
1681145278.1517422-CDS-Ecto-sp8_S_contig925:15244..152901681145278.1517422-CDS-Ecto-sp8_S_contig925:15244..15290Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig925 15245..15290 +
1681145278.1666062-CDS-Ecto-sp8_S_contig925:15571..156741681145278.1666062-CDS-Ecto-sp8_S_contig925:15571..15674Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig925 15572..15674 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig925.30661.1prot_Ecto-sp8_S_contig925.30661.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig925 14963..15674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig925.30661.1

>prot_Ecto-sp8_S_contig925.30661.1 ID=prot_Ecto-sp8_S_contig925.30661.1|Name=mRNA_Ecto-sp8_S_contig925.30661.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=97bp
VPGGERDQPPRHDRRGRLSGLSRDFDHLCNKARKEGLIRLRAGERRYAAP
RLRSIEARRKTSRRWKLRPPSPRSSPSRRRRTAATIVSRRTSLSCC*
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mRNA from alignment at Ecto-sp8_S_contig925:14963..15674+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig925.30661.1 ID=mRNA_Ecto-sp8_S_contig925.30661.1|Name=mRNA_Ecto-sp8_S_contig925.30661.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=712bp|location=Sequence derived from alignment at Ecto-sp8_S_contig925:14963..15674+ (Ectocarpus species8 EcLAC_412)
GTCCCGGGCGGCGAGAGAGATCAGCCACCGAGACACGATCGACGAGGCCG
CCTTTCAGGCTTGTCTCGGGACTTTGACCACCTTTGCAACAAGGCGAGGA
AAGAAGGGCTCATCAGGCTCAGAGCCGGAGAGAGAAGGTATGGTTGGAAG
TTTGCGGAAGGGGTAATTTTCTTTTCTTTCCTGTACCACAATCCACAAGT
CAAACACCGTGTAATGCCCGACCCCTTGTTTGTTTTCCAGACTCCGCGGG
AAGGGAGGGAGCGATGCAAGGAGGAAGCTAAGCTGCGCCACGTTTGCGAT
CGATCGAGGCCAGAAGGAAAACCTCCAGGTGAGACCAGTTGACACCAGAT
GCGCCCCCGCAGGCGCAGTGCCGGGCCGACAAATAACTGAGTTTTTTTGG
CCAGCCGTAGCGCGCCAAAGTCGCATGAATTTGAAGATCTGCACCGCCTG
TACCACTTTACCCCCAAACTGTTTCGCCGGCGACCACACACCCCGAATTG
CGCCATCGCTAGCCAACCGTTGCTGTACCATCCTCTGTTTCGGCGGCGAT
CAATGGTCCCGATTGGCTCTACTGAAACAACTTAGCCTTGCTCGCTGGAA
TTTGAACAGGCGCTGGAAGCTACGCCCGCCGTCGCCCAGATCGTCACCGT
CGAGGAGAAGACGGACGGCTGCGACCATTGTATCTAGACGTACCTCACTG
TCGTGTTGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig925:14963..15674+

>mRNA_Ecto-sp8_S_contig925.30661.1 ID=mRNA_Ecto-sp8_S_contig925.30661.1|Name=mRNA_Ecto-sp8_S_contig925.30661.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp8_S_contig925:14963..15674+ (Ectocarpus species8 EcLAC_412)
GTCCCGGGCGGCGAGAGAGATCAGCCACCGAGACACGATCGACGAGGCCG
CCTTTCAGGCTTGTCTCGGGACTTTGACCACCTTTGCAACAAGGCGAGGA
AAGAAGGGCTCATCAGGCTCAGAGCCGGAGAGAGAAGGTATGCTGCGCCA
CGTTTGCGATCGATCGAGGCCAGAAGGAAAACCTCCAGGCGCTGGAAGCT
ACGCCCGCCGTCGCCCAGATCGTCACCGTCGAGGAGAAGACGGACGGCTG
CGACCATTGTATCTAGACGTACCTCACTGTCGTGTTGTTGA
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