mRNA_Ecto-sp8_S_contig92494.30658.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig92494.30658.1
Unique NamemRNA_Ecto-sp8_S_contig92494.30658.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig92494.30658.1 vs. uniprot
Match: D7FMA0_ECTSI (Uridine kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMA0_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 1.330e-30
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 TLSRAVVEALGGAQRVTYICHDYYYRDLSHLPIEQRAKTNFDHPDALETSLLVKQL 168
            TLSRAVVEALGGA+RVTYICHDYYYRDLSHLPIEQRAKTNFDHPDALETSLLVKQL
Sbjct:   18 TLSRAVVEALGGARRVTYICHDYYYRDLSHLPIEQRAKTNFDHPDALETSLLVKQL 73
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BLAST of mRNA_Ecto-sp8_S_contig92494.30658.1 vs. uniprot
Match: A0A448ZKP6_9STRA (PRK domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZKP6_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.980e-17
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    1 TLSRAVVEALGGAQRVTYICHDYYYRDLSHLPIEQRAKTNFDHPDALETSLLVKQLGKFE 180
            TLS+AV  ALGG     Y+ HD+YYRD SH  +E+R+KTNFDHPD+LET LLVK L + +
Sbjct:   30 TLSKAVYNALGGEANCVYLTHDHYYRDQSHKTLEERSKTNFDHPDSLETELLVKHLRELK 89
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BLAST of mRNA_Ecto-sp8_S_contig92494.30658.1 vs. uniprot
Match: V9EEH1_PHYPR (Uridine kinase n=13 Tax=Phytophthora TaxID=4783 RepID=V9EEH1_PHYPR)

HSP 1 Score: 81.3 bits (199), Expect = 9.710e-17
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 TLSRAVVEALGGAQRVTYICHDYYYRDLSHLPIEQRAKTNFDHPDALETSLLVKQL 168
            TLSRA++   G  +RV+Y+ HDYYY+DLSHL +EQRAK NFDHPDALET L+VK L
Sbjct:  129 TLSRAIMAEFG-TERVSYLSHDYYYKDLSHLTMEQRAKHNFDHPDALETDLMVKHL 183
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BLAST of mRNA_Ecto-sp8_S_contig92494.30658.1 vs. uniprot
Match: A0A5D6XUJ5_9STRA (Uridine kinase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUJ5_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.010e-16
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 TLSRAVVEALGGAQRVTYICHDYYYRDLSHLPIEQRAKTNFDHPDALETSLLVKQL 168
            TLSRA++   G A+RVTY+ HDYYY+DL HL +EQRA+ NFDHPD+LET LLVK L
Sbjct:   98 TLSRAIMTEFG-AERVTYLSHDYYYKDLGHLTMEQRAEHNFDHPDSLETDLLVKHL 152
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BLAST of mRNA_Ecto-sp8_S_contig92494.30658.1 vs. uniprot
Match: A0A484EDL0_BRELC (Uridine kinase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDL0_BRELC)

HSP 1 Score: 80.5 bits (197), Expect = 1.330e-16
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 TLSRAVVEALGGAQRVTYICHDYYYRDLSHLPIEQRAKTNFDHPDALETSLLVKQL 168
            TLSRA++   G A RV+Y+ HDYYY+DL+HL +EQRAK NFDHPDALET L+V+ L
Sbjct:   98 TLSRAIMSEFG-ADRVSYLSHDYYYKDLTHLTVEQRAKHNFDHPDALETDLMVEHL 152
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BLAST of mRNA_Ecto-sp8_S_contig92494.30658.1 vs. uniprot
Match: A0A067BXR9_SAPPC (PRK domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BXR9_SAPPC)

HSP 1 Score: 77.4 bits (189), Expect = 2.130e-16
Identity = 36/56 (64.29%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 TLSRAVVEALGGAQRVTYICHDYYYRDLSHLPIEQRAKTNFDHPDALETSLLVKQL 168
            TLSRA++E +G A  V+Y+ HDYYYRD+S+  +EQRA+ NFDHPD+LETSLLV+ L
Sbjct:   92 TLSRAIIEEIGEAN-VSYLSHDYYYRDISNRTLEQRAQHNFDHPDSLETSLLVRHL 146
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BLAST of mRNA_Ecto-sp8_S_contig92494.30658.1 vs. uniprot
Match: H3GFY1_PHYRM (Uridine kinase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GFY1_PHYRM)

HSP 1 Score: 80.9 bits (198), Expect = 2.490e-16
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 TLSRAVVEALGGAQRVTYICHDYYYRDLSHLPIEQRAKTNFDHPDALETSLLVKQL 168
            TLSRA++   G A+RV+Y+ HDYYY+DL+HL  EQRAK NFDHPDALET L+VK L
Sbjct:  542 TLSRAIMAEFG-AERVSYLSHDYYYKDLAHLTTEQRAKHNFDHPDALETDLMVKHL 596
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BLAST of mRNA_Ecto-sp8_S_contig92494.30658.1 vs. uniprot
Match: A0A6A4FYT4_9STRA (Uridine kinase n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A4FYT4_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.840e-16
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 TLSRAVVEALGGAQRVTYICHDYYYRDLSHLPIEQRAKTNFDHPDALETSLLVKQL 168
            TLSRA++   G A RV+Y+ HDYYY+DL+HL +EQRAK NFDHPD+LET L+VK L
Sbjct:   98 TLSRAIMAEFG-ADRVSYLSHDYYYKDLAHLTMEQRAKHNFDHPDSLETDLMVKHL 152
[Close]
BLAST of mRNA_Ecto-sp8_S_contig92494.30658.1 vs. uniprot
Match: A0A3M6VF61_9STRA (Uridine kinase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VF61_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.870e-16
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 TLSRAVVEALGGAQRVTYICHDYYYRDLSHLPIEQRAKTNFDHPDALETSLLVKQL 168
            TLSRA++   G   RV+Y+ HDYYY+DL+HL +EQRAK NFDHPDALET L+VK L
Sbjct:   97 TLSRAIMTEFG-VDRVSYLSHDYYYKDLAHLTMEQRAKHNFDHPDALETELMVKHL 151
[Close]
BLAST of mRNA_Ecto-sp8_S_contig92494.30658.1 vs. uniprot
Match: A0A2D4BY21_PYTIN (Uridine kinase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BY21_PYTIN)

HSP 1 Score: 79.3 bits (194), Expect = 3.870e-16
Identity = 36/56 (64.29%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 TLSRAVVEALGGAQRVTYICHDYYYRDLSHLPIEQRAKTNFDHPDALETSLLVKQL 168
            TLSRA++E  G A RVTY+ HDYYY+DL HL +E+RA+ NFDHPD+LET LLV+ +
Sbjct:   98 TLSRAIIEEFG-ADRVTYLSHDYYYKDLKHLTMEERAEHNFDHPDSLETELLVQHV 152
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig92494.30658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMA0_ECTSI1.330e-3098.21Uridine kinase n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
A0A448ZKP6_9STRA1.980e-1760.00PRK domain-containing protein n=1 Tax=Pseudo-nitzs... [more]
V9EEH1_PHYPR9.710e-1767.86Uridine kinase n=13 Tax=Phytophthora TaxID=4783 Re... [more]
A0A5D6XUJ5_9STRA1.010e-1667.86Uridine kinase n=1 Tax=Pythium brassicum TaxID=148... [more]
A0A484EDL0_BRELC1.330e-1666.07Uridine kinase n=1 Tax=Bremia lactucae TaxID=4779 ... [more]
A0A067BXR9_SAPPC2.130e-1664.29PRK domain-containing protein n=1 Tax=Saprolegnia ... [more]
H3GFY1_PHYRM2.490e-1667.86Uridine kinase n=1 Tax=Phytophthora ramorum TaxID=... [more]
A0A6A4FYT4_9STRA2.840e-1666.07Uridine kinase n=6 Tax=Phytophthora TaxID=4783 Rep... [more]
A0A3M6VF61_9STRA3.870e-1666.07Uridine kinase n=1 Tax=Peronospora effusa TaxID=54... [more]
A0A2D4BY21_PYTIN3.870e-1664.29Uridine kinase n=1 Tax=Pythium insidiosum TaxID=11... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig92494contigEcto-sp8_S_contig92494:411..599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score115.5
Seed ortholog evalue8.7e-24
Seed eggNOG ortholog2880.D7FMA0
Model size189
KEGG rclassRC00002,RC00017
KEGG koko:K00876
KEGG ReactionR00513,R00516,R00517,R00962,R00964,R00967,R00968,R00970,R01548,R01549,R01880,R02091,R02096,R02097,R02327,R02332,R02371,R02372,R08232
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.UMP salvage
EggNOG OGsCOG0572@1,KOG4203@2759
Ec32 ortholog descriptionUridine kinase like
Ec32 orthologEc-17_003720.1
EC2.7.1.48
Cds size189
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145277.946103-CDS-Ecto-sp8_S_contig92494:410..5991681145277.946103-CDS-Ecto-sp8_S_contig92494:410..599Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig92494 411..599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig92494.30658.1prot_Ecto-sp8_S_contig92494.30658.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig92494 411..599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig92494.30658.1

>prot_Ecto-sp8_S_contig92494.30658.1 ID=prot_Ecto-sp8_S_contig92494.30658.1|Name=mRNA_Ecto-sp8_S_contig92494.30658.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=63bp
TLSRAVVEALGGAQRVTYICHDYYYRDLSHLPIEQRAKTNFDHPDALETS
LLVKQLGKFERVI
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mRNA from alignment at Ecto-sp8_S_contig92494:411..599+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig92494.30658.1 ID=mRNA_Ecto-sp8_S_contig92494.30658.1|Name=mRNA_Ecto-sp8_S_contig92494.30658.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=189bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92494:411..599+ (Ectocarpus species8 EcLAC_412)
ACGTTATCTCGAGCCGTCGTTGAAGCGCTGGGTGGTGCTCAGAGGGTCAC
GTATATCTGCCACGACTACTACTACCGAGATCTTTCCCATCTCCCCATCG
AGCAACGAGCCAAGACCAACTTCGACCACCCAGACGCGCTCGAAACTTCC
TTGCTGGTGAAGCAGCTCGGTAAGTTTGAGAGGGTGATT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig92494:411..599+

>mRNA_Ecto-sp8_S_contig92494.30658.1 ID=mRNA_Ecto-sp8_S_contig92494.30658.1|Name=mRNA_Ecto-sp8_S_contig92494.30658.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92494:411..599+ (Ectocarpus species8 EcLAC_412)
ACGTTATCTCGAGCCGTCGTTGAAGCGCTGGGTGGTGCTCAGAGGGTCAC
GTATATCTGCCACGACTACTACTACCGAGATCTTTCCCATCTCCCCATCG
AGCAACGAGCCAAGACCAACTTCGACCACCCAGACGCGCTCGAAACTTCC
TTGCTGGTGAAGCAGCTCGGTAAGTTTGAGAGGGTGATT
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