mRNA_Ecto-sp8_S_contig92490.30656.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig92490.30656.1
Unique NamemRNA_Ecto-sp8_S_contig92490.30656.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig92490.30656.1 vs. uniprot
Match: D8LP29_ECTSI (Glycosyltransferase, family GT49 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP29_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 4.930e-19
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 DPVWYPVNRLRNVAVKAVTTSHFLMTDIDIWPDINAYSAL 120
            DPVWYPVNRLRNVAVKAV TSHFLMTDIDIWPD+NAYSAL
Sbjct:   15 DPVWYPVNRLRNVAVKAVKTSHFLMTDIDIWPDVNAYSAL 54
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BLAST of mRNA_Ecto-sp8_S_contig92490.30656.1 vs. uniprot
Match: A0A7S0J5T3_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J5T3_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 1.240e-8
Identity = 22/36 (61.11%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   13 YPVNRLRNVAVKAVTTSHFLMTDIDIWPDINAYSAL 120
            YP+N LRNVA+KAV TSHFL++DID+WP +++Y+ +
Sbjct:  220 YPINALRNVALKAVRTSHFLLSDIDLWPSVDSYNEI 255
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BLAST of mRNA_Ecto-sp8_S_contig92490.30656.1 vs. uniprot
Match: A0A7S3K145_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K145_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.170e-8
Identity = 25/40 (62.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    1 DPVWYPVNRLRNVAVKAVTTSHFLMTDIDIWPDINAYSAL 120
            D   YPVNRLRN+A+K V TSHFL+ DID+WPD   Y  L
Sbjct:  211 DATKYPVNRLRNLALKHVQTSHFLLHDIDLWPDSTLYKRL 250
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BLAST of mRNA_Ecto-sp8_S_contig92490.30656.1 vs. uniprot
Match: A0A196SG44_BLAHN (Glycosyltransferase-like protein LARGE1 n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SG44_BLAHN)

HSP 1 Score: 55.5 bits (132), Expect = 8.020e-8
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    4 PVWYPVNRLRNVAVKAVTTSHFLMTDIDIWPDINAYSAL 120
            P  YP NRLRN+A+K +T+SHF + D+D+WP  NAY+AL
Sbjct:  115 PSEYPYNRLRNIAMKHITSSHFWVMDMDMWPSDNAYNAL 153
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BLAST of mRNA_Ecto-sp8_S_contig92490.30656.1 vs. uniprot
Match: A0A196SFK5_BLAHN (Glycosyltransferase-like protein LARGE2-like protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SFK5_BLAHN)

HSP 1 Score: 54.7 bits (130), Expect = 1.470e-7
Identity = 19/36 (52.78%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   13 YPVNRLRNVAVKAVTTSHFLMTDIDIWPDINAYSAL 120
            YP+NRLRN+A+++V+TSHF++ D+D+WP +  Y +L
Sbjct:   89 YPLNRLRNIAIESVSTSHFVLFDMDVWPSLTTYKSL 124
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BLAST of mRNA_Ecto-sp8_S_contig92490.30656.1 vs. uniprot
Match: A0A196SK84_BLAHN (Glycosyltransferase-like protein LARGE2 n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SK84_BLAHN)

HSP 1 Score: 54.3 bits (129), Expect = 1.920e-7
Identity = 20/40 (50.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 DPVWYPVNRLRNVAVKAVTTSHFLMTDIDIWPDINAYSAL 120
            DP+ YPVN+LRN+A+  V T+HF ++D+D+WP  + Y A+
Sbjct:   49 DPLLYPVNKLRNMAIAQVETTHFYLSDMDVWPSPSTYRAI 88
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BLAST of mRNA_Ecto-sp8_S_contig92490.30656.1 vs. uniprot
Match: A0A196SIJ4_BLAHN (Glycosyltransferase-like protein LARGE2 n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SIJ4_BLAHN)

HSP 1 Score: 54.3 bits (129), Expect = 2.080e-7
Identity = 20/40 (50.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 DPVWYPVNRLRNVAVKAVTTSHFLMTDIDIWPDINAYSAL 120
            DP+ YPVN+LRN+A+  V T+HF ++D+D+WP  + Y A+
Sbjct:  140 DPLLYPVNKLRNMAIAQVETTHFYLSDMDVWPSPSTYRAI 179
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BLAST of mRNA_Ecto-sp8_S_contig92490.30656.1 vs. uniprot
Match: A0A196S5G6_BLAHN (Glycosyltransferase-like protein LARGE2-like protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196S5G6_BLAHN)

HSP 1 Score: 53.9 bits (128), Expect = 2.850e-7
Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   13 YPVNRLRNVAVKAVTTSHFLMTDIDIWPDINAYSAL 120
            YP+NRLRN+A+  VTTSHF++ D+D+WP  + YS L
Sbjct:  219 YPINRLRNLAIADVTTSHFVLFDMDVWPSSDTYSIL 254
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BLAST of mRNA_Ecto-sp8_S_contig92490.30656.1 vs. uniprot
Match: A0A196SE66_BLAHN (Glycosyltransferase-like protein LARGE1 n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SE66_BLAHN)

HSP 1 Score: 53.5 bits (127), Expect = 3.890e-7
Identity = 20/36 (55.56%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   13 YPVNRLRNVAVKAVTTSHFLMTDIDIWPDINAYSAL 120
            YP+NRLRN+A+  V TSHF++ D+D+WP  + Y+AL
Sbjct:  276 YPINRLRNIAIADVATSHFILFDMDVWPSHDTYAAL 311
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BLAST of mRNA_Ecto-sp8_S_contig92490.30656.1 vs. uniprot
Match: D8M7K9_BLAHO (Uncharacterized protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M7K9_BLAHO)

HSP 1 Score: 52.8 bits (125), Expect = 6.780e-7
Identity = 19/40 (47.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    1 DPVWYPVNRLRNVAVKAVTTSHFLMTDIDIWPDINAYSAL 120
            DP ++P+N LRN A+  V T+HF +TD+D+WP   +Y A+
Sbjct:  216 DPFYFPINTLRNRAIDNVKTTHFWLTDMDVWPSFGSYDAI 255
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig92490.30656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LP29_ECTSI4.930e-1995.00Glycosyltransferase, family GT49 n=1 Tax=Ectocarpu... [more]
A0A7S0J5T3_9EUKA1.240e-861.11Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S3K145_9STRA3.170e-862.50Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A196SG44_BLAHN8.020e-858.97Glycosyltransferase-like protein LARGE1 n=1 Tax=Bl... [more]
A0A196SFK5_BLAHN1.470e-752.78Glycosyltransferase-like protein LARGE2-like prote... [more]
A0A196SK84_BLAHN1.920e-750.00Glycosyltransferase-like protein LARGE2 n=1 Tax=Bl... [more]
A0A196SIJ4_BLAHN2.080e-750.00Glycosyltransferase-like protein LARGE2 n=1 Tax=Bl... [more]
A0A196S5G6_BLAHN2.850e-758.33Glycosyltransferase-like protein LARGE2-like prote... [more]
A0A196SE66_BLAHN3.890e-755.56Glycosyltransferase-like protein LARGE1 n=1 Tax=Bl... [more]
D8M7K9_BLAHO6.780e-747.50Uncharacterized protein n=1 Tax=Blastocystis homin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig92490contigEcto-sp8_S_contig92490:88..207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score86.3
Seed ortholog evalue3.6e-15
Seed eggNOG ortholog2880.D8LP29
Model size120
KEGG koko:K09668
KEGG Pathwayko00515,ko01100,map00515,map01100
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.protein O-linked glycosylation
EggNOG OGsKOG3765@1,KOG3765@2759
Ec32 ortholog descriptionGlycosyltransferase, family GT49
Ec32 orthologEc-06_006800.1
Cds size120
COG Functional cat.A
CAZyGT49,GT8
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145277.8618839-CDS-Ecto-sp8_S_contig92490:87..2071681145277.8618839-CDS-Ecto-sp8_S_contig92490:87..207Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig92490 88..207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig92490.30656.1prot_Ecto-sp8_S_contig92490.30656.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig92490 88..207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig92490.30656.1

>prot_Ecto-sp8_S_contig92490.30656.1 ID=prot_Ecto-sp8_S_contig92490.30656.1|Name=mRNA_Ecto-sp8_S_contig92490.30656.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=40bp
DPVWYPVNRLRNVAVKAVTTSHFLMTDIDIWPDINAYSAL
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mRNA from alignment at Ecto-sp8_S_contig92490:88..207+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig92490.30656.1 ID=mRNA_Ecto-sp8_S_contig92490.30656.1|Name=mRNA_Ecto-sp8_S_contig92490.30656.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=120bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92490:88..207+ (Ectocarpus species8 EcLAC_412)
GACCCGGTGTGGTACCCGGTCAACCGACTCCGGAACGTGGCGGTGAAGGC
GGTCACGACGTCCCACTTCCTCATGACGGACATCGACATCTGGCCCGACA
TCAACGCCTATTCTGCGCTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig92490:88..207+

>mRNA_Ecto-sp8_S_contig92490.30656.1 ID=mRNA_Ecto-sp8_S_contig92490.30656.1|Name=mRNA_Ecto-sp8_S_contig92490.30656.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=120bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92490:88..207+ (Ectocarpus species8 EcLAC_412)
GACCCGGTGTGGTACCCGGTCAACCGACTCCGGAACGTGGCGGTGAAGGC
GGTCACGACGTCCCACTTCCTCATGACGGACATCGACATCTGGCCCGACA
TCAACGCCTATTCTGCGCTG
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