mRNA_Ecto-sp8_S_contig9245.30653.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9245.30653.1
Unique NamemRNA_Ecto-sp8_S_contig9245.30653.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig9245.30653.1 vs. uniprot
Match: A0A6H5KSZ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSZ4_9PHAE)

HSP 1 Score: 453 bits (1166), Expect = 2.180e-154
Identity = 216/229 (94.32%), Postives = 222/229 (96.94%), Query Frame = 1
Query:  289 MASEGLKRPRSNDGGDESGTVSSSSGDDLLDRKCGFCNLGHNEGLEMATDFIDIPTDRNVWASDEPTLTLNRKPIWCHTNCVHFSPQTIYDETAPKCKWREVSREYFRARCLSCIICEEKGASIGCTVSSCNASVHFPCAIK---EVLSDGRKNWYPCQESELPYFCPKHFAQRSVHEQDKEIARLSDLSQGNEPYPIPLEMGLALAMKTPFHSALAAPGTANGKGHGG 966
            MASEGLKRPRS+DG +ESGTVSSSSGDDLLDRKCGFCNLGHNEGLEMATDFIDIPTDRNVWASDEPTLTLNRKP+WCHTNCVHFSPQTIYDETAPKCKWR+VSREYFRARCLSCIICEEKGASIGC VSSCNASVHFPCAIK   EVL DGRKNWYPCQESELPYFCPKHFAQR+VHEQDKEIARLSDLSQGNEPYPIPLEMGLALAMKTPFHSALAAPGTANGKG+ G
Sbjct:    1 MASEGLKRPRSDDGCEESGTVSSSSGDDLLDRKCGFCNLGHNEGLEMATDFIDIPTDRNVWASDEPTLTLNRKPVWCHTNCVHFSPQTIYDETAPKCKWRDVSREYFRARCLSCIICEEKGASIGCRVSSCNASVHFPCAIKASREVLPDGRKNWYPCQESELPYFCPKHFAQRTVHEQDKEIARLSDLSQGNEPYPIPLEMGLALAMKTPFHSALAAPGTANGKGYAG 229          
BLAST of mRNA_Ecto-sp8_S_contig9245.30653.1 vs. uniprot
Match: E4WQI9_OIKDI (PHD-type domain-containing protein n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4WQI9_OIKDI)

HSP 1 Score: 68.2 bits (165), Expect = 6.430e-10
Identity = 36/105 (34.29%), Postives = 54/105 (51.43%), Query Frame = 1
Query:  442 IDIPTDRNVWASDEPTLTLNRKPIWCHTNCVHFSPQ--------------TIYDETAPKCKWR--EVSREYFRARCLSCIICEEKGASIGCTVSSCNASVHFPCA 708
            +D       W  D  T  ++ K + CH  C+ FSPQ              + +D+T  K  +R  ++ +E  RA+ +SC +C EKGA+IGC+  SC  S H+PCA
Sbjct:   84 LDFEAQYGKWFKDYFT-NVDGKDLSCHEGCLVFSPQLFVRPQSDELSIPLSAHDQTIGKMGFRREDIVKELNRAKAISCFLCNEKGANIGCSEKSCRKSFHYPCA 187          
BLAST of mRNA_Ecto-sp8_S_contig9245.30653.1 vs. uniprot
Match: A0A0P1A932_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A932_PLAHL)

HSP 1 Score: 70.9 bits (172), Expect = 9.660e-10
Identity = 41/147 (27.89%), Postives = 65/147 (44.22%), Query Frame = 1
Query:  388 CGFCNLGHNEGLEMATDFIDIPTDRNVWASDEPTLTLNRKPIWCHTNCVHFSPQTIYDETAPKCKWREVSREYFRARCLSCIICEEKGASIGCTVSSCNASVHFPCAIKEVLSDGRKNWYPCQESELPYFCPKHFAQRSVHEQDKEI 828
            C  C +G ++ +      + +P D          L +  + ++ H  C   SP     +      W  V+RE  R R L C+ C ++GA+IGCT+S+C  S H+ CAI           Y     +L +FCP H  +R+V     E+
Sbjct: 1285 CALCGIGDDDAM------LKLPGD----GMGIHPLIVGVQRVFVHDQCAIASPLCFNRDG----NWYNVTREIRRGRALLCVACNKRGATIGCTISACQNSYHWKCAIN----------YGWSVDQLHFFCPDHRTERNVENVAHEV 1407          
BLAST of mRNA_Ecto-sp8_S_contig9245.30653.1 vs. uniprot
Match: G4YIG9_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YIG9_PHYSP)

HSP 1 Score: 69.7 bits (169), Expect = 2.270e-9
Identity = 38/146 (26.03%), Postives = 68/146 (46.58%), Query Frame = 1
Query:  388 CGFCNLGHNEGLEMATDFIDIPTDRNVWASDEPTLTLNRKPIWCHTNCVHFSPQTIYDETAPKCKWREVSREYFRARCLSCIICEEKGASIGCTVSSCNASVHFPCAIKEVLSDGRKNWYPCQESELPYFCPKHFAQRSVHEQDKE 825
            C FC +G ++ +      + +P D          L    + ++ H  C   SP     +      W  V+RE  R R L+C+ C ++GA+IGCT+++C  S H+ CAI           Y     ++ +FCP H ++R+  ++ ++
Sbjct:  991 CAFCGVGDDDAM------LKLPGD----GMGAHPLIYGVQRVFVHDQCAIASPLCFNRDG----NWYNVAREIRRGRSLTCVACNKRGATIGCTIAACRNSYHWKCAIT----------YGWSVDQMHFFCPTHQSRRTQRQRQEQ 1112          
BLAST of mRNA_Ecto-sp8_S_contig9245.30653.1 vs. uniprot
Match: A0A7R9UGP6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGP6_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 5.550e-9
Identity = 34/116 (29.31%), Postives = 53/116 (45.69%), Query Frame = 1
Query:  367 DDLLDRKCGFCNLGHNEGLEMATDFIDIPTDRNVWASDEPTLTLNRKPIWCHTNCVHFSPQTIYDETAPKCKWREVSREYFRARCLSCIICEEKGASIGCTVSSCNASVHFPCAIK 714
            DDL+   C FC+ GH +G  +    +             P L  N + +W H  C   SPQ   DE         + +E  R R + C++C ++GA++GC   SC  + H  CA++
Sbjct: 1166 DDLV---CAFCHRGHLDGWPLPGPTL----------GPHPLLAGNGERLWAHDQCALLSPQAFQDEAG---NLYNIMKEIRRGRVMDCVLCNQRGATVGCYRRSCRGNYHVHCAME 1265          
BLAST of mRNA_Ecto-sp8_S_contig9245.30653.1 vs. uniprot
Match: A0A6A3MDY0_9STRA (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MDY0_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 9.910e-9
Identity = 42/152 (27.63%), Postives = 70/152 (46.05%), Query Frame = 1
Query:  349 VSSSSGDDLLDRKCGFCNLGHNEGLEMATDFIDIPTDRNVWASDEPTLTLNRKPIWCHTNCVHFSPQTIYDETAPKCKWREVSREYFRARCLSCIICEEKGASIGCTVSSCNASVHFPCAIKEVLSDGRKNWYPCQESELPYFCPKHFAQRS 804
            V + +GDD L   C  C +G ++ +      + +P D          L    + ++ H  C   SP     +      W  VS+E  R R L+C+ C ++GA+IGCT++SC  S H+ CAI           +     ++ +FCP H ++R+
Sbjct: 1349 VPAENGDDAL-IPCALCGVGDDDAM------LKLPGD----GMGVHPLIYGAQRVFVHDQCAIASPLCFNRDG----NWYNVSKEIRRGRSLTCVGCNKRGATIGCTIASCRNSYHWKCAIN----------FGWSVDQMHFFCPGHQSRRA 1475          
BLAST of mRNA_Ecto-sp8_S_contig9245.30653.1 vs. uniprot
Match: L8GIU8_ACACA (SET domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GIU8_ACACA)

HSP 1 Score: 62.8 bits (151), Expect = 2.840e-7
Identity = 38/125 (30.40%), Postives = 62/125 (49.60%), Query Frame = 1
Query:  451 PTDRNVWA---SDEPTL---------TLNRKPIWCHTNCVHFSPQTIYDETAPKCKWREVSREYFRARCLSCIICEEKGASIGCTVSSCNASVHFPCAIKEVLSDGRKNWYPCQESELPYFCPKH 789
            PTD++  A    D+P+L            RKP+W H+ C+H++ +   DE+ P      V+R  + A  L C  C++K A++GC +  C  + H+PCAI+   S G           + ++CP H
Sbjct:  107 PTDQSCCALCRMDDPSLGDLKRVGIGRYGRKPLWAHSECLHYASRKTEDESDPDL----VTRAIYHA--LPCKRCKKKRATMGCRIERCPYACHYPCAIE---SGGE------YVDNVGFYCPGH 216          
BLAST of mRNA_Ecto-sp8_S_contig9245.30653.1 vs. uniprot
Match: A0A0L0DLJ8_THETB (Bromodomain adjacent to zinc finger domain-containing protein 2B n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DLJ8_THETB)

HSP 1 Score: 61.2 bits (147), Expect = 1.120e-6
Identity = 40/138 (28.99%), Postives = 65/138 (47.10%), Query Frame = 1
Query:  403 LGHNEGLEMATDFIDIPTDRNVWASDEPTLTLNR-KPIWCHTNCVHF-SPQTIYDETAPKCKWREVSREYFRARCLSCIICE---EKGASIGCTVSSCNASVHFPCAIKEV--LSDGRKNWYPCQESELPYFCPKHFA 795
            L  N+ ++ A   + + TD      + P +   + K ++ H NC  F +P+T+YDE  P   W  + +   R R + C + +    KGA++GCT ++C  S H PC+ K+     DG             +FCP H A
Sbjct:  285 LDTNKPIKCALCRLTVETDVTGPFLNPPFVAPGKAKYLYVHLNCARFGAPETLYDE--PSDTWFNLIKAVSRGRFIKCALSDCPSGKGATLGCTTTTCQRSYHLPCSGKDAAFFEDGGV-----------FFCPTHEA 409          
BLAST of mRNA_Ecto-sp8_S_contig9245.30653.1 vs. uniprot
Match: F2UIA0_SALR5 (Uncharacterized protein n=2 Tax=Opisthokonta TaxID=33154 RepID=F2UIA0_SALR5)

HSP 1 Score: 59.7 bits (143), Expect = 4.330e-6
Identity = 27/67 (40.30%), Postives = 41/67 (61.19%), Query Frame = 1
Query:  514 WCHTNCVHFSPQTIYDETAPKCKW-REVSREYFRARCLSCIICEEKGASIGCTVSSCNASVHFPCAI 711
            W H NC+ +S     +E++ + +  R VS    R +   C  C +KGA++GC V SCNA++HFPCA+
Sbjct: 2748 WVHFNCIWWSAGLEREESSGRVQHVRRVSDVLSRGKQSRCTACRKKGATVGCHVPSCNANMHFPCAV 2814          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9245.30653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KSZ4_9PHAE2.180e-15494.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
E4WQI9_OIKDI6.430e-1034.29PHD-type domain-containing protein n=1 Tax=Oikople... [more]
A0A0P1A932_PLAHL9.660e-1027.89Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
G4YIG9_PHYSP2.270e-926.03Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A7R9UGP6_9STRA5.550e-929.31Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6A3MDY0_9STRA9.910e-927.63Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]
L8GIU8_ACACA2.840e-730.40SET domain containing protein n=1 Tax=Acanthamoeba... [more]
A0A0L0DLJ8_THETB1.120e-628.99Bromodomain adjacent to zinc finger domain-contain... [more]
F2UIA0_SALR54.330e-640.30Uncharacterized protein n=2 Tax=Opisthokonta TaxID... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9245contigEcto-sp8_S_contig9245:2864..6115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score471.1
Seed ortholog evalue3.1e-130
Seed eggNOG ortholog2880.D8LCC1
Model size970
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K11420,ko:K14778
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko04211,map00310,map04211
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010501,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031974,GO:0031981,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071704,GO:0090304,GO:0140098,GO:1901360
Exons4
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1082@2759
EC2.1.1.43,3.6.4.13
Cds size714
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145277.6246543-UTR-Ecto-sp8_S_contig9245:2863..31181681145277.6246543-UTR-Ecto-sp8_S_contig9245:2863..3118Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9245 2864..3118 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145277.6608202-CDS-Ecto-sp8_S_contig9245:3118..32891681145277.6608202-CDS-Ecto-sp8_S_contig9245:3118..3289Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9245 3119..3289 +
1681145277.686414-CDS-Ecto-sp8_S_contig9245:4031..42051681145277.686414-CDS-Ecto-sp8_S_contig9245:4031..4205Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9245 4032..4205 +
1681145277.7048182-CDS-Ecto-sp8_S_contig9245:5135..52491681145277.7048182-CDS-Ecto-sp8_S_contig9245:5135..5249Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9245 5136..5249 +
1681145277.7191787-CDS-Ecto-sp8_S_contig9245:5860..61151681145277.7191787-CDS-Ecto-sp8_S_contig9245:5860..6115Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9245 5861..6115 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9245.30653.1prot_Ecto-sp8_S_contig9245.30653.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9245 3119..6115 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9245.30653.1

>prot_Ecto-sp8_S_contig9245.30653.1 ID=prot_Ecto-sp8_S_contig9245.30653.1|Name=mRNA_Ecto-sp8_S_contig9245.30653.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=238bp
MPEAQKHCNEVMASEGLKRPRSNDGGDESGTVSSSSGDDLLDRKCGFCNL
GHNEGLEMATDFIDIPTDRNVWASDEPTLTLNRKPIWCHTNCVHFSPQTI
YDETAPKCKWREVSREYFRARCLSCIICEEKGASIGCTVSSCNASVHFPC
AIKEVLSDGRKNWYPCQESELPYFCPKHFAQRSVHEQDKEIARLSDLSQG
NEPYPIPLEMGLALAMKTPFHSALAAPGTANGKGHGGG
back to top

mRNA from alignment at Ecto-sp8_S_contig9245:2864..6115+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9245.30653.1 ID=mRNA_Ecto-sp8_S_contig9245.30653.1|Name=mRNA_Ecto-sp8_S_contig9245.30653.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3252bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9245:2864..6115+ (Ectocarpus species8 EcLAC_412)
CGCATGCGATCCCTTCCCTGCAAGATTCGAAGAAGGGCTCTATGGTCTGC TTGAACAGAACCCCGTAGTGTATTGGTCGGTCCAGGTCCAGATACATATT GCCGTCGATAAGGTAGACGAGAGCAGGGAGAGCGTACGGCAAGGACAGGC GACCACTACTTTTTGAATTCAAACGCGGAGTTTTTGTAGGAACAGCAGCA GCAGGCGCAGCAGAACATGCTCGCGGGTTGAGGATACTCCGACCGACGTC CCTCTATGCCCGAGGCTCAAAAACACTGCAACGAAGTGATGGCGTCCGAA GGACTGAAGCGACCACGCTCCAATGACGGCGGCGACGAAAGCGGAACCGT TTCCAGCAGCAGCGGAGACGACCTGCTCGACCGTAAATGCGGTTTCTGTA ACCTGGGCCACAACGAGGGACTGGAGGTGCGAACTGCTGCTGTCGTCCTA ACCCCTTGGCGACCTGCATGGACAATTCGCACACCCGTGGAGCTTTCTCA ATAGACATCAGTGTAGATGTGTAGATGTGAGTGTACACTTGTTGCTGAGC GGACAGTTCTTCTCCCAGTTACGGGACCCCTCCAGTGGCCAGCAAGGCTA GCAGCGAGCACATAATCATTTACAAGGAACCCGAGTTCACGGAATGCGGC GTTTTCTGTGGTCCGATCCGCCACACTGCTGTTGTTGCTGTCAATAGGTT TGGATGTACATAACGACCACCTACCGCTGTTTTACGTTCGAAGCGCCTCC CGGTCTCGCTCCTCCGACCTAGGTTACGATACTCCCGTCGTTGCTGCTCA GTTAGCCGTCTCATTTGCCGCCGGTTCAACACGTACAGTAGTCTAGTCTG AACAAAGCAAAAAATAAATACACGCACAGAAAGACTACCCATTCGAGATA TACCCACAGTCAATTGCCCCTCTCACGTTATTTTTTTGGTTCTAGAAACT TGGTGTACCCCTCTTTGGGTGGTTGGGTTGTGACCACGGAAGGAAGGCGT CCGCGTCAGTTGGACCGGTACGGATGTTACAAGGAACTGAGCCCAGACCG GAACGGTTTTTAATGTGAAGACAACAACAACAACAACAACAACAACAACA ACGCCTTCCGCCCTCTGTTCCTCCCTCCGCCGGGCGAACTCTCGATGCAT CCAACGTTACACACAAAGATGGCAACGGACTTCATCGACATCCCTACCGA CCGGAACGTGTGGGCGTCCGATGAGCCAACCCTGACGCTAAACAGGAAAC CCATTTGGTGCCACACCAACTGCGTGCACTTCAGCCCGCAAACGATCTAC GACGAAACCGCACCGAAGTGCAAGTGGCGTGAAGTCAGCAGAGTGAGCAA GAGCAGCCGCAGCCAGTGGCAGAGCTTGACCTCGGTGGTCTCGGCAGTAT ATGGTTTGGAGCCGCATGTGTTTGGTTGGCGGTGTGATTTTTCGCCAGAA CCGGTCGTCTTGCCTCCGTCCAACGCGCCCGTTCTTCTCTCCGTTTTGGG TGGGCCTTCCTCCTGTTGGTCGAAATCCGCATTAAATAGCGCGCCGCAGA CCGGGCGTGCCTTGACGCGCCTTGGTATCATCCAGCCCGATGGCTTCTTG TCAGGCCGGTTCCGGGATACCTTTGCTTTTTTTGCCTCAGACACATTGTT GTTCTTCTTCGGGGACCGATGGAGGAAAGGACCCGTTCAGAAGAGGACTG TCTTGCCTGGCCGGCTCCGCCCCTTCCCACTACTGTACTGCTGTGGTTGC TGTAGTTTTTTTGCGCCCAAGGGAGAAAACGCCAAGAGAACTCGTGGCGT GGCACCAGTGAAGCGGCCGAAGAAACATCCAGAAATGAGAGCACGTACCC GGGGAGCGTCTCGCGTGGGAGCGTCTCCCCAAGAGGACAAGGCGCCATTT TCTCCGCTTCGTTTTGTGGTGTGGTGAAGTTGATCACCGTGGACCACCCA GCTCTTTCAAGGAAAACAAGTGTAGCAACCATGCACCGTCTTGTCGTCTA TCAGTATGGGGCGCAATCACCCATACGAGGTCCATTGCAGCGCCCGGTTT GTTCCCCCTCACCCTCCACGCCGTTCATTCCGGTCCAGCTGTGGCCTGTT CCCATCCCTTAATCCCGTCTGCGTGCACCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCACCCCCCCGTTTCGACCGCCCCGCTCGCCGC GTGTCCCCCCCCCTTCACCCCCCTGCGCGCCCCCCCCCCCCCCCCCCCCC TCCCCCGTCAACGCGCACGCAGGAGTACTTCCGTGCCCGATGCTTGAGTT GCATCATCTGCGAGGAAAAGGGGGCATCGATTGGGTGCACGGTATCCAGC TGTAATGCTTCGGTCCACTTTCCATGCGCAATCAAGGCGAGTCGAGTGGA GTGTGATGTCAACTGCACTAAAATATTTATTCTTGCGCTACCCCCGACCG CTAGCTCCAAAGGCTGGCAGTGTTGTCTTGTCGGCGCGTTCCCCGTGCGG CATCGATGCCCACCAAGCGTTATTGGAGCGCCGAGGATGAGAGATGCAAA GTGCTCGAGGGTCGTACATGGCCGCTTTGTTTTAACCGTTTGTACCTGGC TGCAGGGATATTGTTATGCTACCACTGTTGTGTGGCGCAAGTAACGCCCC TCCCCTCGTCAATTTTCCGTCCTTACGCCCGTTCTTCTCCATACCCCGCG TTTCCTTTCCCAACCATCGCCCCCCCCCCCCTCGCCCCCAGCCTCTTCTT CGCGACTTCGACATGAACCTATCATGTTCCATATTGTCGCTCCGTTTCTG CTTCAAGGCCCTCCTGTTTTCACTCCCATAGCAGGAGAGCCATATGTTCT TCTCGCCCACGCCGCGAATAATCGTACGCGCACGCCCCCTTTTGTTTCGC GCGCTTTCTCGACGGCACCTGCCTCTCCTCGTTCCGTGTGGTGTGGTCTC TCACCGCTCGTCCGTCGTCGCCGCCTGTCGTTTTTGTTGCCGCTCAGGAG GTCCTTTCAGACGGCCGGAAGAACTGGTACCCCTGCCAGGAGTCCGAGCT CCCCTACTTCTGCCCGAAGCACTTCGCCCAGCGCTCGGTGCACGAGCAGG ACAAGGAGATCGCCCGGCTGTCCGACCTGTCCCAGGGCAACGAGCCCTAC CCCATCCCCCTCGAGATGGGCCTGGCCTTGGCGATGAAGACGCCCTTCCA CTCCGCGCTGGCGGCGCCCGGGACGGCGAACGGCAAAGGGCACGGCGGCG GC
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9245:2864..6115+

>mRNA_Ecto-sp8_S_contig9245.30653.1 ID=mRNA_Ecto-sp8_S_contig9245.30653.1|Name=mRNA_Ecto-sp8_S_contig9245.30653.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9245:2864..6115+ (Ectocarpus species8 EcLAC_412)
ATGCCCGAGGCTCAAAAACACTGCAACGAAGTGATGGCGTCCGAAGGACT
GAAGCGACCACGCTCCAATGACGGCGGCGACGAAAGCGGAACCGTTTCCA
GCAGCAGCGGAGACGACCTGCTCGACCGTAAATGCGGTTTCTGTAACCTG
GGCCACAACGAGGGACTGGAGATGGCAACGGACTTCATCGACATCCCTAC
CGACCGGAACGTGTGGGCGTCCGATGAGCCAACCCTGACGCTAAACAGGA
AACCCATTTGGTGCCACACCAACTGCGTGCACTTCAGCCCGCAAACGATC
TACGACGAAACCGCACCGAAGTGCAAGTGGCGTGAAGTCAGCAGAGAGTA
CTTCCGTGCCCGATGCTTGAGTTGCATCATCTGCGAGGAAAAGGGGGCAT
CGATTGGGTGCACGGTATCCAGCTGTAATGCTTCGGTCCACTTTCCATGC
GCAATCAAGGAGGTCCTTTCAGACGGCCGGAAGAACTGGTACCCCTGCCA
GGAGTCCGAGCTCCCCTACTTCTGCCCGAAGCACTTCGCCCAGCGCTCGG
TGCACGAGCAGGACAAGGAGATCGCCCGGCTGTCCGACCTGTCCCAGGGC
AACGAGCCCTACCCCATCCCCCTCGAGATGGGCCTGGCCTTGGCGATGAA
GACGCCCTTCCACTCCGCGCTGGCGGCGCCCGGGACGGCGAACGGCAAAG
GGCACGGCGGCGGC
back to top