mRNA_Ecto-sp8_S_contig9245.30653.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig9245.30653.1 vs. uniprot
Match: A0A6H5KSZ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSZ4_9PHAE) HSP 1 Score: 453 bits (1166), Expect = 2.180e-154 Identity = 216/229 (94.32%), Postives = 222/229 (96.94%), Query Frame = 1
Query: 289 MASEGLKRPRSNDGGDESGTVSSSSGDDLLDRKCGFCNLGHNEGLEMATDFIDIPTDRNVWASDEPTLTLNRKPIWCHTNCVHFSPQTIYDETAPKCKWREVSREYFRARCLSCIICEEKGASIGCTVSSCNASVHFPCAIK---EVLSDGRKNWYPCQESELPYFCPKHFAQRSVHEQDKEIARLSDLSQGNEPYPIPLEMGLALAMKTPFHSALAAPGTANGKGHGG 966
MASEGLKRPRS+DG +ESGTVSSSSGDDLLDRKCGFCNLGHNEGLEMATDFIDIPTDRNVWASDEPTLTLNRKP+WCHTNCVHFSPQTIYDETAPKCKWR+VSREYFRARCLSCIICEEKGASIGC VSSCNASVHFPCAIK EVL DGRKNWYPCQESELPYFCPKHFAQR+VHEQDKEIARLSDLSQGNEPYPIPLEMGLALAMKTPFHSALAAPGTANGKG+ G
Sbjct: 1 MASEGLKRPRSDDGCEESGTVSSSSGDDLLDRKCGFCNLGHNEGLEMATDFIDIPTDRNVWASDEPTLTLNRKPVWCHTNCVHFSPQTIYDETAPKCKWRDVSREYFRARCLSCIICEEKGASIGCRVSSCNASVHFPCAIKASREVLPDGRKNWYPCQESELPYFCPKHFAQRTVHEQDKEIARLSDLSQGNEPYPIPLEMGLALAMKTPFHSALAAPGTANGKGYAG 229
BLAST of mRNA_Ecto-sp8_S_contig9245.30653.1 vs. uniprot
Match: E4WQI9_OIKDI (PHD-type domain-containing protein n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4WQI9_OIKDI) HSP 1 Score: 68.2 bits (165), Expect = 6.430e-10 Identity = 36/105 (34.29%), Postives = 54/105 (51.43%), Query Frame = 1
Query: 442 IDIPTDRNVWASDEPTLTLNRKPIWCHTNCVHFSPQ--------------TIYDETAPKCKWR--EVSREYFRARCLSCIICEEKGASIGCTVSSCNASVHFPCA 708
+D W D T ++ K + CH C+ FSPQ + +D+T K +R ++ +E RA+ +SC +C EKGA+IGC+ SC S H+PCA
Sbjct: 84 LDFEAQYGKWFKDYFT-NVDGKDLSCHEGCLVFSPQLFVRPQSDELSIPLSAHDQTIGKMGFRREDIVKELNRAKAISCFLCNEKGANIGCSEKSCRKSFHYPCA 187
BLAST of mRNA_Ecto-sp8_S_contig9245.30653.1 vs. uniprot
Match: A0A0P1A932_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A932_PLAHL) HSP 1 Score: 70.9 bits (172), Expect = 9.660e-10 Identity = 41/147 (27.89%), Postives = 65/147 (44.22%), Query Frame = 1
Query: 388 CGFCNLGHNEGLEMATDFIDIPTDRNVWASDEPTLTLNRKPIWCHTNCVHFSPQTIYDETAPKCKWREVSREYFRARCLSCIICEEKGASIGCTVSSCNASVHFPCAIKEVLSDGRKNWYPCQESELPYFCPKHFAQRSVHEQDKEI 828
C C +G ++ + + +P D L + + ++ H C SP + W V+RE R R L C+ C ++GA+IGCT+S+C S H+ CAI Y +L +FCP H +R+V E+
Sbjct: 1285 CALCGIGDDDAM------LKLPGD----GMGIHPLIVGVQRVFVHDQCAIASPLCFNRDG----NWYNVTREIRRGRALLCVACNKRGATIGCTISACQNSYHWKCAIN----------YGWSVDQLHFFCPDHRTERNVENVAHEV 1407
BLAST of mRNA_Ecto-sp8_S_contig9245.30653.1 vs. uniprot
Match: G4YIG9_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YIG9_PHYSP) HSP 1 Score: 69.7 bits (169), Expect = 2.270e-9 Identity = 38/146 (26.03%), Postives = 68/146 (46.58%), Query Frame = 1
Query: 388 CGFCNLGHNEGLEMATDFIDIPTDRNVWASDEPTLTLNRKPIWCHTNCVHFSPQTIYDETAPKCKWREVSREYFRARCLSCIICEEKGASIGCTVSSCNASVHFPCAIKEVLSDGRKNWYPCQESELPYFCPKHFAQRSVHEQDKE 825
C FC +G ++ + + +P D L + ++ H C SP + W V+RE R R L+C+ C ++GA+IGCT+++C S H+ CAI Y ++ +FCP H ++R+ ++ ++
Sbjct: 991 CAFCGVGDDDAM------LKLPGD----GMGAHPLIYGVQRVFVHDQCAIASPLCFNRDG----NWYNVAREIRRGRSLTCVACNKRGATIGCTIAACRNSYHWKCAIT----------YGWSVDQMHFFCPTHQSRRTQRQRQEQ 1112
BLAST of mRNA_Ecto-sp8_S_contig9245.30653.1 vs. uniprot
Match: A0A7R9UGP6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGP6_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 5.550e-9 Identity = 34/116 (29.31%), Postives = 53/116 (45.69%), Query Frame = 1
Query: 367 DDLLDRKCGFCNLGHNEGLEMATDFIDIPTDRNVWASDEPTLTLNRKPIWCHTNCVHFSPQTIYDETAPKCKWREVSREYFRARCLSCIICEEKGASIGCTVSSCNASVHFPCAIK 714
DDL+ C FC+ GH +G + + P L N + +W H C SPQ DE + +E R R + C++C ++GA++GC SC + H CA++
Sbjct: 1166 DDLV---CAFCHRGHLDGWPLPGPTL----------GPHPLLAGNGERLWAHDQCALLSPQAFQDEAG---NLYNIMKEIRRGRVMDCVLCNQRGATVGCYRRSCRGNYHVHCAME 1265
BLAST of mRNA_Ecto-sp8_S_contig9245.30653.1 vs. uniprot
Match: A0A6A3MDY0_9STRA (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MDY0_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 9.910e-9 Identity = 42/152 (27.63%), Postives = 70/152 (46.05%), Query Frame = 1
Query: 349 VSSSSGDDLLDRKCGFCNLGHNEGLEMATDFIDIPTDRNVWASDEPTLTLNRKPIWCHTNCVHFSPQTIYDETAPKCKWREVSREYFRARCLSCIICEEKGASIGCTVSSCNASVHFPCAIKEVLSDGRKNWYPCQESELPYFCPKHFAQRS 804
V + +GDD L C C +G ++ + + +P D L + ++ H C SP + W VS+E R R L+C+ C ++GA+IGCT++SC S H+ CAI + ++ +FCP H ++R+
Sbjct: 1349 VPAENGDDAL-IPCALCGVGDDDAM------LKLPGD----GMGVHPLIYGAQRVFVHDQCAIASPLCFNRDG----NWYNVSKEIRRGRSLTCVGCNKRGATIGCTIASCRNSYHWKCAIN----------FGWSVDQMHFFCPGHQSRRA 1475
BLAST of mRNA_Ecto-sp8_S_contig9245.30653.1 vs. uniprot
Match: L8GIU8_ACACA (SET domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GIU8_ACACA) HSP 1 Score: 62.8 bits (151), Expect = 2.840e-7 Identity = 38/125 (30.40%), Postives = 62/125 (49.60%), Query Frame = 1
Query: 451 PTDRNVWA---SDEPTL---------TLNRKPIWCHTNCVHFSPQTIYDETAPKCKWREVSREYFRARCLSCIICEEKGASIGCTVSSCNASVHFPCAIKEVLSDGRKNWYPCQESELPYFCPKH 789
PTD++ A D+P+L RKP+W H+ C+H++ + DE+ P V+R + A L C C++K A++GC + C + H+PCAI+ S G + ++CP H
Sbjct: 107 PTDQSCCALCRMDDPSLGDLKRVGIGRYGRKPLWAHSECLHYASRKTEDESDPDL----VTRAIYHA--LPCKRCKKKRATMGCRIERCPYACHYPCAIE---SGGE------YVDNVGFYCPGH 216
BLAST of mRNA_Ecto-sp8_S_contig9245.30653.1 vs. uniprot
Match: A0A0L0DLJ8_THETB (Bromodomain adjacent to zinc finger domain-containing protein 2B n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DLJ8_THETB) HSP 1 Score: 61.2 bits (147), Expect = 1.120e-6 Identity = 40/138 (28.99%), Postives = 65/138 (47.10%), Query Frame = 1
Query: 403 LGHNEGLEMATDFIDIPTDRNVWASDEPTLTLNR-KPIWCHTNCVHF-SPQTIYDETAPKCKWREVSREYFRARCLSCIICE---EKGASIGCTVSSCNASVHFPCAIKEV--LSDGRKNWYPCQESELPYFCPKHFA 795
L N+ ++ A + + TD + P + + K ++ H NC F +P+T+YDE P W + + R R + C + + KGA++GCT ++C S H PC+ K+ DG +FCP H A
Sbjct: 285 LDTNKPIKCALCRLTVETDVTGPFLNPPFVAPGKAKYLYVHLNCARFGAPETLYDE--PSDTWFNLIKAVSRGRFIKCALSDCPSGKGATLGCTTTTCQRSYHLPCSGKDAAFFEDGGV-----------FFCPTHEA 409
BLAST of mRNA_Ecto-sp8_S_contig9245.30653.1 vs. uniprot
Match: F2UIA0_SALR5 (Uncharacterized protein n=2 Tax=Opisthokonta TaxID=33154 RepID=F2UIA0_SALR5) HSP 1 Score: 59.7 bits (143), Expect = 4.330e-6 Identity = 27/67 (40.30%), Postives = 41/67 (61.19%), Query Frame = 1
Query: 514 WCHTNCVHFSPQTIYDETAPKCKW-REVSREYFRARCLSCIICEEKGASIGCTVSSCNASVHFPCAI 711
W H NC+ +S +E++ + + R VS R + C C +KGA++GC V SCNA++HFPCA+
Sbjct: 2748 WVHFNCIWWSAGLEREESSGRVQHVRRVSDVLSRGKQSRCTACRKKGATVGCHVPSCNANMHFPCAV 2814 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9245.30653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig9245.30653.1 >prot_Ecto-sp8_S_contig9245.30653.1 ID=prot_Ecto-sp8_S_contig9245.30653.1|Name=mRNA_Ecto-sp8_S_contig9245.30653.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=238bp MPEAQKHCNEVMASEGLKRPRSNDGGDESGTVSSSSGDDLLDRKCGFCNLback to top mRNA from alignment at Ecto-sp8_S_contig9245:2864..6115+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig9245.30653.1 ID=mRNA_Ecto-sp8_S_contig9245.30653.1|Name=mRNA_Ecto-sp8_S_contig9245.30653.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3252bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9245:2864..6115+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9245:2864..6115+ >mRNA_Ecto-sp8_S_contig9245.30653.1 ID=mRNA_Ecto-sp8_S_contig9245.30653.1|Name=mRNA_Ecto-sp8_S_contig9245.30653.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9245:2864..6115+ (Ectocarpus species8 EcLAC_412)back to top |