mRNA_Ecto-sp8_S_contig92444.30652.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig92444.30652.1
Unique NamemRNA_Ecto-sp8_S_contig92444.30652.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig92444.30652.1 vs. uniprot
Match: A0A6H5JQJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQJ9_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 5.520e-20
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:  271 RFLFWLSSPFLVSEREPHCVLERAVQFNDGLRAVLEPRGWIEAS 402
            RFLFW+SSPFLVSEREPHCVLERAVQFNDGLRAVLEPRGWIEAS
Sbjct:  367 RFLFWMSSPFLVSEREPHCVLERAVQFNDGLRAVLEPRGWIEAS 410
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BLAST of mRNA_Ecto-sp8_S_contig92444.30652.1 vs. uniprot
Match: A0A6H5KGQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGQ9_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 9.890e-20
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:  271 RFLFWLSSPFLVSEREPHCVLERAVQFNDGLRAVLEPRGWIEAS 402
            RFLFWLSSPFLVSEREPHCVLERAVQFNDGLR+VLEPRGWIEAS
Sbjct:  589 RFLFWLSSPFLVSEREPHCVLERAVQFNDGLRSVLEPRGWIEAS 632
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BLAST of mRNA_Ecto-sp8_S_contig92444.30652.1 vs. uniprot
Match: D7G564_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G564_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 3.340e-19
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:  271 RFLFWLSSPFLVSEREPHCVLERAVQFNDGLRAVLEPRGWIEAS 402
            RFLFWLSSPFLVSEREPHCVLERAVQFNDGLRAVLEPRGWIE +
Sbjct:  520 RFLFWLSSPFLVSEREPHCVLERAVQFNDGLRAVLEPRGWIEVN 563
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BLAST of mRNA_Ecto-sp8_S_contig92444.30652.1 vs. uniprot
Match: A0A6H5KRQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRQ7_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 3.650e-13
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:  271 RFLFWLSSPFLVSEREPHCVLERAVQFNDGLRAVLEPRGWIE 396
            R+ FWLS+PFLVSEREPHCVLER +QF   LR +LEPRGWIE
Sbjct:  392 RYTFWLSAPFLVSEREPHCVLERGLQFTKALRGLLEPRGWIE 433
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BLAST of mRNA_Ecto-sp8_S_contig92444.30652.1 vs. uniprot
Match: D7G563_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G563_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 2.730e-10
Identity = 35/65 (53.85%), Postives = 37/65 (56.92%), Query Frame = 2 
Query:  125 MAHTTPRISNLLQIVLYQQNVPPPYDTCCNAVPLATWIR-----SNARSAAQREGFCSGCLPPSW 304
            MAHTTPRISNLLQIVLYQQNV            +A + R              EGFCSGCLPPSW
Sbjct:    1 MAHTTPRISNLLQIVLYQQNV----------TLVAMFFRLLLGLDQMLGLRPNEGFCSGCLPPSW 55
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig92444.30652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JQJ9_9PHAE5.520e-2097.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGQ9_9PHAE9.890e-2097.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G564_ECTSI3.340e-1995.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRQ7_9PHAE3.650e-1376.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G563_ECTSI2.730e-1053.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig92444contigEcto-sp8_S_contig92444:215..618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size404
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_006360.1
Cds size195
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145277.5518174-UTR-Ecto-sp8_S_contig92444:214..3261681145277.5518174-UTR-Ecto-sp8_S_contig92444:214..326Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig92444 215..326 +
1681145277.5752523-UTR-Ecto-sp8_S_contig92444:521..6181681145277.5752523-UTR-Ecto-sp8_S_contig92444:521..618Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig92444 522..618 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145277.5637257-CDS-Ecto-sp8_S_contig92444:326..5211681145277.5637257-CDS-Ecto-sp8_S_contig92444:326..521Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig92444 327..521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig92444.30652.1prot_Ecto-sp8_S_contig92444.30652.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig92444 327..521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig92444.30652.1

>prot_Ecto-sp8_S_contig92444.30652.1 ID=prot_Ecto-sp8_S_contig92444.30652.1|Name=mRNA_Ecto-sp8_S_contig92444.30652.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=65bp
MLPKMAHTTPRISNLLQIVLYQQNVPPPYDTCCNAVPLATWIRSNARSAA
QREGFCSGCLPPSW*
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mRNA from alignment at Ecto-sp8_S_contig92444:215..618+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig92444.30652.1 ID=mRNA_Ecto-sp8_S_contig92444.30652.1|Name=mRNA_Ecto-sp8_S_contig92444.30652.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=404bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92444:215..618+ (Ectocarpus species8 EcLAC_412)
GTTGTTGTCTTCACATTAACACCCGTTCCGGCCTCTGCGCGGTTTCTTCG
TTTCTTCTGACCTCCGGGCCGGTCTAGCTGCCGCGGACCCCTTCCGTGGT
CACAGGCCAACTATGCTACCCAAAATGGCACACACCACACCACGAATATC
AAACTTGCTACAAATAGTCTTGTATCAACAAAACGTACCACCACCTTACG
ACACTTGTTGCAATGCTGTTCCGCTCGCTACTTGGATCCGTTCAAATGCT
CGGTCTGCGGCCCAACGTGAAGGTTTTTGTTCTGGTTGTCTTCCCCCTTC
CTGGTGAGCGAGAGGGAGCCACACTGCGTCCTGGAACGTGCTGTTCAGTT
CAACGACGGCCTTCGGGCTGTGCTGGAACCCAGGGGGTGGATTGAGGCGA
GTGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig92444:215..618+

>mRNA_Ecto-sp8_S_contig92444.30652.1 ID=mRNA_Ecto-sp8_S_contig92444.30652.1|Name=mRNA_Ecto-sp8_S_contig92444.30652.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92444:215..618+ (Ectocarpus species8 EcLAC_412)
ATGCTACCCAAAATGGCACACACCACACCACGAATATCAAACTTGCTACA
AATAGTCTTGTATCAACAAAACGTACCACCACCTTACGACACTTGTTGCA
ATGCTGTTCCGCTCGCTACTTGGATCCGTTCAAATGCTCGGTCTGCGGCC
CAACGTGAAGGTTTTTGTTCTGGTTGTCTTCCCCCTTCCTGGTGA
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