mRNA_Ecto-sp8_S_contig92424.30646.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig92424.30646.1
Unique NamemRNA_Ecto-sp8_S_contig92424.30646.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig92424.30646.1 vs. uniprot
Match: A0A1L3I505_9RHOB (Uncharacterized protein n=1 Tax=Phaeobacter porticola TaxID=1844006 RepID=A0A1L3I505_9RHOB)

HSP 1 Score: 52.8 bits (125), Expect = 8.450e-8
Identity = 26/36 (72.22%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    1 GRPSIV-WIKDFQLTQNAGGALPVRIQNGHCYATLV 105
            G PSIV W KDFQLTQN GGALP   QNGH Y +LV
Sbjct:    2 GAPSIVFWFKDFQLTQNGGGALPDGFQNGHRYTSLV 37
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig92424.30646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1L3I505_9RHOB8.450e-872.22Uncharacterized protein n=1 Tax=Phaeobacter portic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig92424contigEcto-sp8_S_contig92424:512..616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size105
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size105
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145277.1557982-CDS-Ecto-sp8_S_contig92424:511..6161681145277.1557982-CDS-Ecto-sp8_S_contig92424:511..616Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig92424 512..616 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig92424.30646.1prot_Ecto-sp8_S_contig92424.30646.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig92424 512..616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig92424.30646.1

>prot_Ecto-sp8_S_contig92424.30646.1 ID=prot_Ecto-sp8_S_contig92424.30646.1|Name=mRNA_Ecto-sp8_S_contig92424.30646.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=35bp
GRPSIVWIKDFQLTQNAGGALPVRIQNGHCYATLV
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mRNA from alignment at Ecto-sp8_S_contig92424:512..616+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig92424.30646.1 ID=mRNA_Ecto-sp8_S_contig92424.30646.1|Name=mRNA_Ecto-sp8_S_contig92424.30646.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=105bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92424:512..616+ (Ectocarpus species8 EcLAC_412)
GGCCGCCCCTCCATTGTTTGGATCAAGGACTTCCAACTTACACAGAACGC
GGGCGGCGCGCTCCCGGTTAGGATTCAAAATGGGCATTGCTATGCTACTT
TGGTC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig92424:512..616+

>mRNA_Ecto-sp8_S_contig92424.30646.1 ID=mRNA_Ecto-sp8_S_contig92424.30646.1|Name=mRNA_Ecto-sp8_S_contig92424.30646.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=105bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92424:512..616+ (Ectocarpus species8 EcLAC_412)
GGCCGCCCCTCCATTGTTTGGATCAAGGACTTCCAACTTACACAGAACGC
GGGCGGCGCGCTCCCGGTTAGGATTCAAAATGGGCATTGCTATGCTACTT
TGGTC
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