mRNA_Ecto-sp8_S_contig924.30637.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig924.30637.1
Unique NamemRNA_Ecto-sp8_S_contig924.30637.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig924.30637.1 vs. uniprot
Match: A0A6H5K3B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3B9_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 1.950e-24
Identity = 60/90 (66.67%), Postives = 70/90 (77.78%), Query Frame = 3 
Query:  327 MSGLEGIFPFAWGALRLTASL-TAGLKALVGTEDENDALLEWSGDVVFKVRDKSRRTKQQGKADTATAL--VEQHNLYEVRRDLASVRAT 587
            MSGLE + PFAWGALRLT+SL TAG K LVG EDE++ L+EWSGDVV K RDKS  TKQQG+ D + A+   EQH  +EVRRDL SVRA+
Sbjct:    1 MSGLEPLIPFAWGALRLTSSLLTAGFKKLVGVEDESNGLIEWSGDVVLKARDKSLLTKQQGRGDGSAAMRASEQHG-HEVRRDLESVRAS 89
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BLAST of mRNA_Ecto-sp8_S_contig924.30637.1 vs. uniprot
Match: A0A6H5JUZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ0_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 4.760e-23
Identity = 52/73 (71.23%), Postives = 57/73 (78.08%), Query Frame = 3 
Query:  327 MSGLEGIFPFAWGALRLTASL-TAGLKALVGTEDENDALLEWSGDVVFKVRDKSRRTKQQGKADTATALVEQH 542
            MSGLE   P AWGALRLTASL TAG K LVG EDE+DAL+EWSGDVV K RD SRRT+Q+G +D A   VEQH
Sbjct:    1 MSGLEPFIPLAWGALRLTASLVTAGFKKLVGVEDESDALVEWSGDVVLKARDTSRRTQQKG-SDAAARAVEQH 72
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig924.30637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K3B9_9PHAE1.950e-2466.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUZ0_9PHAE4.760e-2371.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig924contigEcto-sp8_S_contig924:5625..7476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size587
Hectar predicted targeting categoryother localisation
Exons2
Cds size261
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145276.6029272-UTR-Ecto-sp8_S_contig924:5624..59501681145276.6029272-UTR-Ecto-sp8_S_contig924:5624..5950Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig924 5625..5950 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145276.6158836-CDS-Ecto-sp8_S_contig924:5950..61781681145276.6158836-CDS-Ecto-sp8_S_contig924:5950..6178Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig924 5951..6178 +
1681145276.6284246-CDS-Ecto-sp8_S_contig924:7443..74761681145276.6284246-CDS-Ecto-sp8_S_contig924:7443..7476Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig924 7444..7476 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig924.30637.1prot_Ecto-sp8_S_contig924.30637.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig924 5951..7476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig924.30637.1

>prot_Ecto-sp8_S_contig924.30637.1 ID=prot_Ecto-sp8_S_contig924.30637.1|Name=mRNA_Ecto-sp8_S_contig924.30637.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=87bp
MSGLEGIFPFAWGALRLTASLTAGLKALVGTEDENDALLEWSGDVVFKVR
DKSRRTKQQGKADTATALVEQHNLYEVRRDLASVRAT
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mRNA from alignment at Ecto-sp8_S_contig924:5625..7476+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig924.30637.1 ID=mRNA_Ecto-sp8_S_contig924.30637.1|Name=mRNA_Ecto-sp8_S_contig924.30637.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1852bp|location=Sequence derived from alignment at Ecto-sp8_S_contig924:5625..7476+ (Ectocarpus species8 EcLAC_412)
GTGATTAGGTAAGATGTCCGGCTTAGGTCGGTACGCTGGGTTGTGTCACC
ACACCTGGCGAAGCGAGACTTGCCTCAAGCAAGGATGGATGTGGTGGAAA
GCGGTGCTTACATCTTGTAATATTGTGCGAGATGTATCCGACCACAACGC
GTACACGGAGACACAGGCAGACATGTTGCCATTGATGTGGCGACCCCCCT
GAAGACCACCACTTCTTCGCTCCCCTGCGGAGGGTCACACAGCAGAGTAA
GTTTTCTCTGCGTGTTATCTGCACACTCTTACCGCCCTCTCGCTGCCACA
ATAATAGCTCGTGCCCGATTGGAAGCATGTCAGGTCTTGAGGGTATTTTC
CCGTTTGCCTGGGGCGCCCTGAGGTTGACCGCGAGCCTCACGGCCGGCCT
GAAGGCGCTAGTAGGCACCGAGGACGAGAACGATGCGCTCCTTGAGTGGT
CAGGCGACGTCGTCTTCAAGGTTCGGGACAAATCGCGCCGGACGAAGCAG
CAGGGAAAGGCAGATACTGCAACAGCTCTTGTTGAACAGCATAATCTCTA
TGAGGCGAGTGAGCCTGAGCATGGTCATGGTCGGGTGTGTGTGAACATGT
AGAATCAATTGGCCCGATACATGTATTCGAGCGGCGTGGTGTTGGCGGCG
GTGTAAAAGTGTCTGCGAGAGAGTTGTGCGACGCGTGCGACGAATAGCAC
CCAAGGTCTCTGGAGAAACACCCCCCCTTGTTTGAGCAACAGGAAGGCTG
ATGTGGTTGCGGTTGGTTCTGACTTGGACCTTTACTCAGTTGCCCCGCGC
CTCGGCGCAATCTCCCCGATCTCCGCGCAAGTAAGTGTTGTTGACAGAAT
CAAGCACCACCACGGAGTGTGGCACCTTGCGGAATTTCAAAGTTAATGAA
GTCTCACACGACGTTGTTGATCTTGTAGGATTGCTGTACTACAACACGGC
CACGATGCGAAGAAAACAATTTCGTGTGTACGCAAGCATTCGACTTCACG
GCTGAATCCTACTCGCGATGATAGCTAAGGCATTTCTTTTAACAACACCG
CTGGCAATAGCCGCGAGGCGTGTACGCCAGCGTTGGCGCGCGCGAAGCGA
GCTCCAGTAGCTCGGTACAGCGACCTAGGCCTACCCACTGCACACCAACC
AAGCTTGGGGTGTGGGTAAGGGTTAAGGGGTTGGTTAGGTTTAGTTAGGC
CTTGCGCCGTGGTGTAGCCTGAGGGCTGGACACCGTTGCTGGTTTTCCTG
TCTACGTCTAACAACCACCACTCAAAAACTGCTGTTAAACTAGCGACCCG
CAAGCAAGTCACCAACGATGGCGTATCTACGGCGCTCCCGCAACAGCAGA
GGGGGGCGGAAGAAAAAAAGGTCATGAAGTGGCCTTCCTCCTGCATGGCC
CCCGCTGGTACGCATAAACTACTTGAACCTGTAAAGACCAACGTCCAGAA
TGGAAAGGGGTGGCGCAAACCTGGCAAACGCATATAGCCTCATTGCGGCC
TACCATACAGCAGTGCTGAACCGCTCGTAAAAACATCCAATTTGAGTTAC
ACGTTCGCGATCGATGCACCCAACGTTGACCTGGTAGTGAACGTGGATAT
TTTTGTTCAGCGACAACTAATGACCCGCCAACCAATGTTGATCTTCTCGT
GATAACGAATGGCAGTCCCGTCGACAGCGCTCATGTCGTTATCTACCACT
GACCTTCGTGTCGTGCGTGATGGGGGGCTCGTTTTTACCATGCGGAGATG
AGGTTGACCTTTTTCCCGACAATGCCGCTCCTTTCCCTGCCGCTGCAATC
GCCACGTCTGATCCGATAGGTTCGACGGGATCTGGCAAGCGTGCGTGCAA
CC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig924:5625..7476+

>mRNA_Ecto-sp8_S_contig924.30637.1 ID=mRNA_Ecto-sp8_S_contig924.30637.1|Name=mRNA_Ecto-sp8_S_contig924.30637.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp8_S_contig924:5625..7476+ (Ectocarpus species8 EcLAC_412)
ATGTCAGGTCTTGAGGGTATTTTCCCGTTTGCCTGGGGCGCCCTGAGGTT
GACCGCGAGCCTCACGGCCGGCCTGAAGGCGCTAGTAGGCACCGAGGACG
AGAACGATGCGCTCCTTGAGTGGTCAGGCGACGTCGTCTTCAAGGTTCGG
GACAAATCGCGCCGGACGAAGCAGCAGGGAAAGGCAGATACTGCAACAGC
TCTTGTTGAACAGCATAATCTCTATGAGGTTCGACGGGATCTGGCAAGCG
TGCGTGCAACC
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