mRNA_Ecto-sp8_S_contig924.30636.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig924.30636.1 vs. uniprot
Match: A0A6H5JCA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCA8_9PHAE) HSP 1 Score: 538 bits (1387), Expect = 5.050e-188 Identity = 278/302 (92.05%), Postives = 285/302 (94.37%), Query Frame = 1
Query: 7 MHSACGGNPRQAGRRKRRATSAAVKERPLLLFTLISIVARGGWATEEGVRTAAGSDGVAGGRNRGDSGVPGTYGSVGEAAAGTGVSFLGVAAVGDAEDASARVRGGDYASHAPADSRVGHGVGGRTDAAGGDGPHLQTKQESASMQSLRGRRARGGGEGGREQKEGRLYESENHARRLPEITVGTVGESFDVRENGASAGSQEQALTEGTLATPPTWDSTLCMAHWGVPELQDEPDPNGYVVYVNGREQLGGNKFLVSDGIFMAKALGRTFVEYPVKDSRVAKLEEASIGLGAYWDLSELCM 912
MHSACGGNPRQ GR KRRA SA VKERPLLLFTLISIVARGGWA EEGVRTA GSDGVAGG NRGDSGV GTYGS+GEA AG GVSFL VAAVGDAEDASARVRGGDYAS+APADSRVGHG+ GRTDAAGGDGPH QTKQ+S S QSLRGRRARGGG+GGREQKEGRLYESENHAR+LPEITVGTVGESFDVRENGASAG QEQALTEGTLATPP WDSTLCMAHWGVPELQDEPDPNGYVVYVNGREQLGGNKFLVSDGIFMAKALGRTFVEYPVKD+RVAKLEEASIGLGAYWDLSELCM
Sbjct: 1 MHSACGGNPRQTGRHKRRAVSAVVKERPLLLFTLISIVARGGWAAEEGVRTAVGSDGVAGGSNRGDSGVAGTYGSIGEATAGAGVSFLDVAAVGDAEDASARVRGGDYASYAPADSRVGHGISGRTDAAGGDGPHPQTKQKSPSWQSLRGRRARGGGDGGREQKEGRLYESENHARQLPEITVGTVGESFDVRENGASAGPQEQALTEGTLATPPAWDSTLCMAHWGVPELQDEPDPNGYVVYVNGREQLGGNKFLVSDGIFMAKALGRTFVEYPVKDARVAKLEEASIGLGAYWDLSELCM 302
BLAST of mRNA_Ecto-sp8_S_contig924.30636.1 vs. uniprot
Match: D8LN55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN55_ECTSI) HSP 1 Score: 340 bits (872), Expect = 8.940e-112 Identity = 167/176 (94.89%), Postives = 171/176 (97.16%), Query Frame = 1
Query: 385 DAAGGDGPHLQTKQESASMQSLRGRRARGGGEGGREQKEGRLYESENHARRLPEITVGTVGESFDVRENGASAGSQEQALTEGTLATPPTWDSTLCMAHWGVPELQDEPDPNGYVVYVNGREQLGGNKFLVSDGIFMAKALGRTFVEYPVKDSRVAKLEEASIGLGAYWDLSELCM 912
DAAGGDGPHLQTKQESA +QSLRGRRARGGGEGGREQKEGRLYESENHAR LPEITVGTVGESFDVRENGASAG QEQ LTEGTLATPP WDSTLCMAHWGVPELQDEPDPNGYVVYVNGREQLGGNKFLV+DGIFMAKALGRTFVEYPVKD+RVAKLE+ASIGLGAYWDLSELCM
Sbjct: 2 DAAGGDGPHLQTKQESAPLQSLRGRRARGGGEGGREQKEGRLYESENHARHLPEITVGTVGESFDVRENGASAGPQEQPLTEGTLATPPAWDSTLCMAHWGVPELQDEPDPNGYVVYVNGREQLGGNKFLVTDGIFMAKALGRTFVEYPVKDARVAKLEDASIGLGAYWDLSELCM 177
BLAST of mRNA_Ecto-sp8_S_contig924.30636.1 vs. uniprot
Match: D8LFR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFR0_ECTSI) HSP 1 Score: 117 bits (294), Expect = 3.440e-26 Identity = 49/88 (55.68%), Postives = 67/88 (76.14%), Query Frame = 1
Query: 646 PPTWDSTLCMAHWGVPELQDEPDPNGYVVYVNGREQLGGNKFLVSDGIFMAKALGRTFVEYPVKDSRVAKLEEASIGLGAYWDLSELC 909
PP W S CM WGVP L EPDP GY+++VNGREQLG N++L+SDG+++AK L RT VE+PV ++R+++ + + +G GAYWDL LC
Sbjct: 121 PPEWGSAGCMKRWGVPWLLTEPDPAGYIIFVNGREQLGSNRYLLSDGLYIAKTLNRTLVEFPVANARISRAD-SDLGFGAYWDLDSLC 207
BLAST of mRNA_Ecto-sp8_S_contig924.30636.1 vs. uniprot
Match: A0A6H5KP62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP62_9PHAE) HSP 1 Score: 114 bits (286), Expect = 4.280e-25 Identity = 48/88 (54.55%), Postives = 66/88 (75.00%), Query Frame = 1
Query: 646 PPTWDSTLCMAHWGVPELQDEPDPNGYVVYVNGREQLGGNKFLVSDGIFMAKALGRTFVEYPVKDSRVAKLEEASIGLGAYWDLSELC 909
PP W S CM WGVP L EPDP GY+++VNGREQLG N++L+SDG+++AK L RT VE+PV ++R+++ + + +G GAYW L LC
Sbjct: 119 PPEWSSADCMKRWGVPWLLTEPDPAGYLIFVNGREQLGSNRYLLSDGLYIAKTLNRTLVEFPVANARISRAD-SDLGFGAYWGLDSLC 205
BLAST of mRNA_Ecto-sp8_S_contig924.30636.1 vs. uniprot
Match: D7G2V8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2V8_ECTSI) HSP 1 Score: 55.5 bits (132), Expect = 4.520e-6 Identity = 25/58 (43.10%), Postives = 34/58 (58.62%), Query Frame = 1
Query: 577 DVRENGASAGSQEQALTEGTLAT--PPTWDSTLCMAHWGVPELQDEPDPNGYVVYVNG 744
+ R ++A + EG +T PP WDS+ CM WGVPELQ E DP GY+++ G
Sbjct: 67 EARSGDSTAALEGVQQAEGRRSTNIPPRWDSSTCMESWGVPELQTEVDPGGYLLFSEG 124
BLAST of mRNA_Ecto-sp8_S_contig924.30636.1 vs. uniprot
Match: A0A6H5JD38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD38_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 1.170e-5 Identity = 26/59 (44.07%), Postives = 35/59 (59.32%), Query Frame = 1
Query: 577 DVRENGASAGSQEQALTEGTLAT--PPTWDSTLCMAHWGVPELQDEPDPNGYVVYVNGR 747
+ R ++A + EG +T PP WDS+ CM WGVPELQ E DP GY+++ GR
Sbjct: 51 EARSGDSTAALEGVQQVEGRRSTNIPPRWDSSTCMESWGVPELQTEVDPGGYLLFSEGR 109 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig924.30636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig924.30636.1 >prot_Ecto-sp8_S_contig924.30636.1 ID=prot_Ecto-sp8_S_contig924.30636.1|Name=mRNA_Ecto-sp8_S_contig924.30636.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=305bp MAMHSACGGNPRQAGRRKRRATSAAVKERPLLLFTLISIVARGGWATEEGback to top mRNA from alignment at Ecto-sp8_S_contig924:482..4805- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig924.30636.1 ID=mRNA_Ecto-sp8_S_contig924.30636.1|Name=mRNA_Ecto-sp8_S_contig924.30636.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4324bp|location=Sequence derived from alignment at Ecto-sp8_S_contig924:482..4805- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig924:482..4805- >mRNA_Ecto-sp8_S_contig924.30636.1 ID=mRNA_Ecto-sp8_S_contig924.30636.1|Name=mRNA_Ecto-sp8_S_contig924.30636.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=915bp|location=Sequence derived from alignment at Ecto-sp8_S_contig924:482..4805- (Ectocarpus species8 EcLAC_412)back to top |