mRNA_Ecto-sp8_S_contig9237.30631.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9237.30631.1
Unique NamemRNA_Ecto-sp8_S_contig9237.30631.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig9237.30631.1 vs. uniprot
Match: D8LE31_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE31_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 5.140e-54
Identity = 91/94 (96.81%), Postives = 91/94 (96.81%), Query Frame = 1
Query:   88 MLQCSLKEYLGFTDSRLTEVADAVFSTFDDDKVGINHLIDALECLASLAIMSGMTIEQKIRYIFGIYDFDESGVLSVDETILALRSTISGLCKL 369
            MLQCSLKEYLGFTDSRLTEVADAVFSTFDDDK   NHLIDALECLASLAIMSGMTIEQKIRYIFGIYDFDESGVLSVDETILALRSTISGLCKL
Sbjct:    1 MLQCSLKEYLGFTDSRLTEVADAVFSTFDDDK---NHLIDALECLASLAIMSGMTIEQKIRYIFGIYDFDESGVLSVDETILALRSTISGLCKL 91          
BLAST of mRNA_Ecto-sp8_S_contig9237.30631.1 vs. uniprot
Match: A0A8J2SIX3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SIX3_9STRA)

HSP 1 Score: 144 bits (364), Expect = 1.150e-37
Identity = 74/123 (60.16%), Postives = 94/123 (76.42%), Query Frame = 1
Query:    1 VPRACVLDLWEAFNDVAEGFGLTIIEFREMLQCSLKEYLGFTDSRLTEVADAVFSTFDDDKVGINHLIDALECLASLAIMSGMTIEQKIRYIFGIYDFDESGVLSVDETILALRSTISGLCKL 369
            VP A V  LW+AFND+AEG GLT  E  E+L+  LK+ LG+ + +L  ++ ++F   DDD+   N LIDALE LA+L  +SGM+ EQKI +IFGI+DFDESGVL+VDETILALRST+SGLCKL
Sbjct:   20 VPSASVHHLWDAFNDIAEGMGLTSDETCEILRVCLKDVLGYAEKKLDALSRSLFVALDDDQ---NELIDALEFLAALGALSGMSQEQKITFIFGIFDFDESGVLTVDETILALRSTLSGLCKL 139          
BLAST of mRNA_Ecto-sp8_S_contig9237.30631.1 vs. uniprot
Match: A0A7S3JVR1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JVR1_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.560e-37
Identity = 70/123 (56.91%), Postives = 95/123 (77.24%), Query Frame = 1
Query:    1 VPRACVLDLWEAFNDVAEGFGLTIIEFREMLQCSLKEYLGFTDSRLTEVADAVFSTFDDDKVGINHLIDALECLASLAIMSGMTIEQKIRYIFGIYDFDESGVLSVDETILALRSTISGLCKL 369
            +P  C+ +LW+AFNDVAEGFGLT  E  E+L+ +L+E+LG+T+ +L  ++  +FS  DDDK   N L DALE L+ L I+SGM+  +K+ ++FG+YDFDESGVL+VDE IL LRST+SGLCKL
Sbjct:   20 LPCRCIHELWKAFNDVAEGFGLTREEMIEILRVALREFLGYTEKKLENLSRELFSILDDDK---NDLADALEFLSCLCIISGMSAREKMVFVFGMYDFDESGVLTVDEMILLLRSTLSGLCKL 139          
BLAST of mRNA_Ecto-sp8_S_contig9237.30631.1 vs. uniprot
Match: A0A7S2KZJ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KZJ6_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.100e-29
Identity = 50/102 (49.02%), Postives = 76/102 (74.51%), Query Frame = 1
Query:    1 VPRACVLDLWEAFNDVAEGFGLTIIEFREMLQCSLKEYLGFTDSRLTEVADAVFSTFDDDKVGINHLIDALECLASLAIMSGMTIEQKIRYIFGIYDFDESG 306
            +P   V +LWEAFNDVAEGFGL I EF++M++ S+K++ G +D RL  +++ +F  +DDD    N ++D+ E L+S+AI+S M+  +K+RY++ IYDFDESG
Sbjct:   20 LPHKTVQELWEAFNDVAEGFGLNIDEFQDMIRLSVKDFTGISDKRLNALSEVLFRVYDDD---CNSMVDSFEFLSSIAILSSMSNVEKLRYLYRIYDFDESG 118          
BLAST of mRNA_Ecto-sp8_S_contig9237.30631.1 vs. uniprot
Match: A0A835ZKM6_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKM6_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.680e-28
Identity = 68/168 (40.48%), Postives = 92/168 (54.76%), Query Frame = 1
Query:    1 VPRACVLDLWEAFNDVAEGFGLTIIEFREMLQCSLKEYL---------------------------------------------GFTDSRLTEVADAVFSTFDDDKVGINHLIDALECLASLAIMSGMTIEQKIRYIFGIYDFDESGVLSVDETILALRSTISGLCKL 369
            +P+  V DLWEAFNDVAEGFGL+  E R+ML  +L+ +L                                               +D++   VADA+F+  DDD+   N L+DALE L  +A++SGM++  K R++F IYDFDESG LS DE +LALRST+SG+ KL
Sbjct:   21 LPKPRVYDLWEAFNDVAEGFGLSPEEVRDMLHAALRAHLRSAQPQLPPFRYLLPHSLHTPCVSRPHCSXXXXXXXXXXXXXXXXXLSDAQRDGVADALFTALDDDR---NGLVDALELLGGVALLSGMSLADKARFVFAIYDFDESGRLSADEMVLALRSTVSGISKL 185          
BLAST of mRNA_Ecto-sp8_S_contig9237.30631.1 vs. uniprot
Match: A0A7S3H5W4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H5W4_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.160e-28
Identity = 53/98 (54.08%), Postives = 76/98 (77.55%), Query Frame = 1
Query:   76 EFREMLQCSLKEYLGFTDSRLTEVADAVFSTFDDDKVGINHLIDALECLASLAIMSGMTIEQKIRYIFGIYDFDESGVLSVDETILALRSTISGLCKL 369
            EF+E+++ ++ EYL  T+ +L    DAVF  FDDD+   N L+D+LE L++ AI+SGMT E+KIR+IF +YDFDESGVL++DE +L+ RS++SGL KL
Sbjct:    2 EFQEIVKSAIMEYLSVTERQLNFDTDAVFRLFDDDE---NKLVDSLEFLSAFAILSGMTPEEKIRFIFAMYDFDESGVLTLDEMVLSFRSSLSGLAKL 96          
BLAST of mRNA_Ecto-sp8_S_contig9237.30631.1 vs. uniprot
Match: A0A8J5J1R4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J1R4_9STRA)

HSP 1 Score: 108 bits (270), Expect = 5.320e-25
Identity = 53/115 (46.09%), Postives = 79/115 (68.70%), Query Frame = 1
Query:   25 LWEAFNDVAEGFGLTIIEFREMLQCSLKEYLGFTDSRLTEVADAVFSTFDDDKVGINHLIDALECLASLAIMSGMTIEQKIRYIFGIYDFDESGVLSVDETILALRSTISGLCKL 369
            LWE+FNDVAEGFGL+  E  E+ +   +       S + +++ A+F+  D D+V  N L+DALE L ++A+MS M I QK+ +++  YDF+E+G LS+DE  LA +ST++GLCKL
Sbjct:   28 LWESFNDVAEGFGLSQDELVEICRSMQQTLEIHARSEMDQLSAALFAALDTDEVMENGLVDALEFLGTMAMMSAMPIPQKVTFVYNCYDFNETGQLSLDELTLAFKSTLTGLCKL 142          
BLAST of mRNA_Ecto-sp8_S_contig9237.30631.1 vs. uniprot
Match: A0A8K1C8I5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C8I5_PYTOL)

HSP 1 Score: 107 bits (266), Expect = 1.860e-24
Identity = 55/115 (47.83%), Postives = 76/115 (66.09%), Query Frame = 1
Query:   25 LWEAFNDVAEGFGLTIIEFREMLQCSLKEYLGFTDSRLTEVADAVFSTFDDDKVGINHLIDALECLASLAIMSGMTIEQKIRYIFGIYDFDESGVLSVDETILALRSTISGLCKL 369
            LWEAFNDVAEGFGL   E  E+ +  +          + ++   +F+ FD D+   N L+DALE L ++AIMS MTI QK+ +++  YDF+ES  +S+DE  LALRST++GLCKL
Sbjct:   28 LWEAFNDVAEGFGLNQDEMCEICRSLMPTLEIHAKIDMDQLTIPLFNAFDTDE---NGLVDALEFLGTIAIMSAMTIRQKLTFVYNCYDFNESSQISIDELTLALRSTLTGLCKL 139          
BLAST of mRNA_Ecto-sp8_S_contig9237.30631.1 vs. uniprot
Match: A0A7S2FF76_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FF76_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.940e-24
Identity = 45/87 (51.72%), Postives = 64/87 (73.56%), Query Frame = 1
Query:    1 VPRACVLDLWEAFNDVAEGFGLTIIEFREMLQCSLKEYLGFTDSRLTEVADAVFSTFDDDKVGINHLIDALECLASLAIMSGMTIEQ 261
            +P+A V DLW+ FND++EGFGLT  EF E+L+C LK+YL +++ +L  +  AVF  +DDD+   N L+DALE L+S AI+SGM  E+
Sbjct:   20 LPKASVYDLWDGFNDISEGFGLTCDEFLEILRCCLKDYLNYSEKKLDNIGKAVFIIYDDDQ---NDLVDALEFLSSFAILSGMVPEE 103          
BLAST of mRNA_Ecto-sp8_S_contig9237.30631.1 vs. uniprot
Match: A0A3R7XU11_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7XU11_9STRA)

HSP 1 Score: 102 bits (254), Expect = 5.270e-24
Identity = 52/129 (40.31%), Postives = 79/129 (61.24%), Query Frame = 1
Query:    7 RACVLDL--------WEAFNDVAEGFGLTIIEFREMLQCSLKEYLGFTDSRLTEVADAVFSTFDDDKVGINHLIDALECLASLAIMSGMTIEQKIRYIFGIYDFDESGVLSVDETILALRSTISGLCKL 369
            RACV  +        WE+FNDVAEGFG+  +E  ++       +     + +  +   +F   D D+   N L+DALE L +LA++S MTI QKI +++  YDF+ESG +++DE  LA++ST++GLCKL
Sbjct:    5 RACVYTVSEKDVNKCWESFNDVAEGFGINRVEMIDICSPLQDTFEIKAKAEMERITGLLFDAMDTDE---NGLVDALEFLGALALLSAMTIPQKITFVYNCYDFNESGEITIDELTLAMKSTLTGLCKL 130          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9237.30631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE31_ECTSI5.140e-5496.81EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A8J2SIX3_9STRA1.150e-3760.16Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3JVR1_9STRA1.560e-3756.91Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2KZJ6_9STRA1.100e-2949.02Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A835ZKM6_9STRA1.680e-2840.48WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A7S3H5W4_9STRA2.160e-2854.08Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A8J5J1R4_9STRA5.320e-2546.09Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A8K1C8I5_PYTOL1.860e-2447.83Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2FF76_9STRA2.940e-2451.72Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A3R7XU11_9STRA5.270e-2440.31Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9237contigEcto-sp8_S_contig9237:6032..7043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score104.8
Seed ortholog evalue3e-20
Seed eggNOG ortholog115417.EPrPW00000026291
Model size369
KEGG koko:K18595,ko:K18598
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Microtubule-associated protein. Source PGD
EggNOG OGs1MCTK@121069,COG2319@1,KOG2106@2759
Cds size369
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145276.1346774-CDS-Ecto-sp8_S_contig9237:6031..62231681145276.1346774-CDS-Ecto-sp8_S_contig9237:6031..6223Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9237 6032..6223 +
1681145276.1487544-CDS-Ecto-sp8_S_contig9237:6514..65911681145276.1487544-CDS-Ecto-sp8_S_contig9237:6514..6591Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9237 6515..6591 +
1681145276.1607513-CDS-Ecto-sp8_S_contig9237:6943..70431681145276.1607513-CDS-Ecto-sp8_S_contig9237:6943..7043Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9237 6944..7043 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9237.30631.1prot_Ecto-sp8_S_contig9237.30631.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9237 6032..7043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9237.30631.1

>prot_Ecto-sp8_S_contig9237.30631.1 ID=prot_Ecto-sp8_S_contig9237.30631.1|Name=mRNA_Ecto-sp8_S_contig9237.30631.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=123bp
VPRACVLDLWEAFNDVAEGFGLTIIEFREMLQCSLKEYLGFTDSRLTEVA
DAVFSTFDDDKVGINHLIDALECLASLAIMSGMTIEQKIRYIFGIYDFDE
SGVLSVDETILALRSTISGLCKL
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mRNA from alignment at Ecto-sp8_S_contig9237:6032..7043+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9237.30631.1 ID=mRNA_Ecto-sp8_S_contig9237.30631.1|Name=mRNA_Ecto-sp8_S_contig9237.30631.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1012bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9237:6032..7043+ (Ectocarpus species8 EcLAC_412)
GTGCCACGGGCGTGTGTGCTAGATCTATGGGAGGCGTTCAACGACGTCGC CGAAGGCTTTGGCTTGACCATAATCGAGTTCAGAGAAATGCTACAGTGCT CGCTCAAGGAGTACTTGGGGTTTACGGACAGCCGGCTGACGGAGGTGGCA GATGCGGTTTTCAGTACTTTCGACGACGACAAGGTGGGTATTGTCATTCG CCTCAGACCCCTGAAAGTGTCGCGTAGAAAGTTTTTCTTGGGGCCTTTTC GTTGACTGGTTTCCGTAGTTCGTTGTATTCGTTTGTCCCAGACAACGTAG GAGCGAGAGACAAACATTACACGGATAATTCTCCTCAAGGTTCAATCAAG TACCCAATGACCGAGGTTGTACAGTAGGAAGAGCTGTGGACATTGCTGAT TTACATGCATGTCTCGATCATCTTTCTCCGAACCAGAAGCGGGTACCTTG TCCTCGCTGTTGCTTTTTGTGATTGCTTCGCAGAACCACCTCATCGATGC CTTGGAGTGCCTGGCATCACTGGCTATAATGTCAGGCATGACCATCGAAC AAAAAATCAGGTGCGCGAGATGGACATCACGTGCCCAGTTCGTGTGCCAG CCGCTGTGGAACACTGGAGAGAGGAATTTGTACTACAGTACTGTACAATA CATATCTACTGTACATGGTTGGACAGTTTAAGCCGCAGCAGCCCTTCACC CTAGACAGACAGCACGATCGACCCGATGAAACATGACCTGTCACGACCTC GTTCGTCACGGACCAGTACGCCTCGTCCGTAGCCAAGGGGAGTAGGTACT TCGTCCCATCCCGCCTTGGTTGCGAGTGAGGTGCTCTGTGGGTGTGATTG TGCAATGATGGACGGTCATGATTCTCATCAAACCCACCAAGCCGCTGCTT GCATTCCGGCAGGTACATATTTGGGATCTACGACTTCGATGAGTCAGGAG TGCTTTCCGTCGACGAAACAATTCTGGCTCTGCGATCAACTATTTCAGGC CTGTGCAAACTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9237:6032..7043+

>mRNA_Ecto-sp8_S_contig9237.30631.1 ID=mRNA_Ecto-sp8_S_contig9237.30631.1|Name=mRNA_Ecto-sp8_S_contig9237.30631.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9237:6032..7043+ (Ectocarpus species8 EcLAC_412)
GTGCCACGGGCGTGTGTGCTAGATCTATGGGAGGCGTTCAACGACGTCGC
CGAAGGCTTTGGCTTGACCATAATCGAGTTCAGAGAAATGCTACAGTGCT
CGCTCAAGGAGTACTTGGGGTTTACGGACAGCCGGCTGACGGAGGTGGCA
GATGCGGTTTTCAGTACTTTCGACGACGACAAGGTGGGTATTAACCACCT
CATCGATGCCTTGGAGTGCCTGGCATCACTGGCTATAATGTCAGGCATGA
CCATCGAACAAAAAATCAGGTACATATTTGGGATCTACGACTTCGATGAG
TCAGGAGTGCTTTCCGTCGACGAAACAATTCTGGCTCTGCGATCAACTAT
TTCAGGCCTGTGCAAACTG
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