mRNA_Ecto-sp8_S_contig9237.30630.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9237.30630.1
Unique NamemRNA_Ecto-sp8_S_contig9237.30630.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9237.30630.1 vs. uniprot
Match: D8LE30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE30_ECTSI)

HSP 1 Score: 796 bits (2056), Expect = 9.400e-290
Identity = 409/438 (93.38%), Postives = 417/438 (95.21%), Query Frame = 1 
Query:    1 DRSSSTTVAKFIQRFRQSEPLPREERQRRREEATEGDFWWTRSQENFGEATEAVRSRCNDIEDRPSTHVAEISTPPPYLESGEGKSPQPSIGSPSKQSESDDCENERRMLDQVAVLEGSQTPLNSPPGRPAHDELPTQLSTSGSEAPELVNDRLATAEVEAADTNVDETGVHVLVGLDAESLVQDKSINACDRGGDELETLDARARTLLEECRQVLAPSSTITLDEVRSFTSSASQSNGPIITALDDLPEELEKRAWMLLNNCEEPPLLPTYNEEVLEVPCSSKPPALDAQGDLVRLGEDDGKTAKVLLRSNPPGGVVARPLGERAGAYHLDQERGCQPTCSSDVRNLGDVNIDSIGRVYPTITDSRYSNNEHTWYSPALDSSGDQERMSSMTLATTPGEEDWFRRDPVLSALLRRHDEVETELKRRRALEPNGDLVS 1314
            DRSSSTTVAKFIQRFRQSEPLPREER     EATEGDFWWTRSQE FGEATEAVRSRCNDIED PSTHVAEI  PPPYLESG+GKSPQPSIGSPSKQSESDDCEN+RRMLDQ+AVLEGSQTPLNSPPGRPAHDELPTQLSTSGSEAPELVNDRLATAEVEAADTNVDETGVHV +GLDAESLVQDKSINACDRGGDELETLD RARTLLEECRQVLAPSSTITLD+VRSFTSSASQSNGPII ALD+LPEELEKRAWMLLNNCEEPPLLPTYNEEVL VPCSSKPPALD QGDLVRLGEDDGKTAKVLLR NPPGGVVARP GER GAYHLDQERG QPTCSSDV NLGDVN+DSIGRV+PTITDSRYSNNE TWYSPALDSSG QERMSSMTLATTPGEEDWFRRDPVLSALLRRHDEVETELKRRRALEPNGDLVS
Sbjct:    2 DRSSSTTVAKFIQRFRQSEPLPREERXXXXXEATEGDFWWTRSQEKFGEATEAVRSRCNDIEDLPSTHVAEIVKPPPYLESGKGKSPQPSIGSPSKQSESDDCENKRRMLDQLAVLEGSQTPLNSPPGRPAHDELPTQLSTSGSEAPELVNDRLATAEVEAADTNVDETGVHVSIGLDAESLVQDKSINACDRGGDELETLDVRARTLLEECRQVLAPSSTITLDQVRSFTSSASQSNGPIIAALDNLPEELEKRAWMLLNNCEEPPLLPTYNEEVLAVPCSSKPPALDTQGDLVRLGEDDGKTAKVLLRRNPPGGVVARPFGEREGAYHLDQERGWQPTCSSDVGNLGDVNVDSIGRVFPTITDSRYSNNERTWYSPALDSSGVQERMSSMTLATTPGEEDWFRRDPVLSALLRRHDEVETELKRRRALEPNGDLVS 439
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BLAST of mRNA_Ecto-sp8_S_contig9237.30630.1 vs. uniprot
Match: A0A6H5J9P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9P1_9PHAE)

HSP 1 Score: 724 bits (1868), Expect = 4.390e-261
Identity = 381/440 (86.59%), Postives = 398/440 (90.45%), Query Frame = 1 
Query:    1 DRSSSTTVAKFIQRFRQSEPLPREERQRRREEATEGDFWWTRSQENFGEATEAVRSRCNDIEDRPSTHVAEISTPPPYLESGEGKSPQPSIGSPSKQSESDDCENERRMLDQVAVLEGSQTPLNSPPGRPAHDELPTQLSTSGSEAPELVNDRLATAEVEAADTNVDETGVH--VLVGLDAESLVQDKSINACDRGGDELETLDARARTLLEECRQVLAPSSTITLDEVRSFTSSASQSNGPIITALDDLPEELEKRAWMLLNNCEEPPLLPTYNEEVLEVPCSSKPPALDAQGDLVRLGEDDGKTAKVLLRSNPPGGVVARPLGERAGAYHLDQERGCQPTCSSDVRNLGDVNIDSIGRVYPTITDSRYSNNEHTWYSPALDSSGDQERMSSMTLATTPGEEDWFRRDPVLSALLRRHDEVETELKRRRALEPNGDLVS 1314
            DRSSSTTVAKFIQRFRQSEPLPREER+R R+EA EGDFWWTRSQENFGEATEAVRSRCNDIEDR STHVAE + P P+LESGEGKSPQPSIGSP KQSESDDCENER  LDQ+AVLEGSQ PLNSPPGR AHDELPTQLS  GSEAPELVNDRLATAE EAADTNV ETGVH  V VGL AE+LV +KSINA D GGDEL+TLDARARTLL+ECRQVLAPSSTITLDEV SFT SASQSNGPII ALDDLPEELEKRAWMLLN+CEEPPLLP YNEEVL VPCSSKPPA+DAQGDLVRLG+ DGKTAKVLLR NPPGG VARPLGER GAYHLDQ RGCQ  CSSDVRNL DVNIDSIGRV  TI +SR+SN E TWYSPALDSSG QERMSSMT+ATTPGEEDWFR+DPVLSALLRRHDEVE ELKRRRALEPNG+LVS
Sbjct:    2 DRSSSTTVAKFIQRFRQSEPLPREERRRXRQEAKEGDFWWTRSQENFGEATEAVRSRCNDIEDRSSTHVAENAKPLPFLESGEGKSPQPSIGSPPKQSESDDCENERPTLDQIAVLEGSQPPLNSPPGRRAHDELPTQLSKRGSEAPELVNDRLATAEAEAADTNVHETGVHDMVPVGLHAENLVLNKSINARDGGGDELQTLDARARTLLQECRQVLAPSSTITLDEVASFTYSASQSNGPIIAALDDLPEELEKRAWMLLNHCEEPPLLPAYNEEVLAVPCSSKPPAIDAQGDLVRLGKYDGKTAKVLLRRNPPGGAVARPLGEREGAYHLDQGRGCQSRCSSDVRNLRDVNIDSIGRVCSTIAESRHSNRERTWYSPALDSSGVQERMSSMTVATTPGEEDWFRQDPVLSALLRRHDEVEAELKRRRALEPNGNLVS 441
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9237.30630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LE30_ECTSI9.400e-29093.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9P1_9PHAE4.390e-26186.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9237contigEcto-sp8_S_contig9237:1..3468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1317
Hectar predicted targeting categoryother localisation
Exons3
Cds size1317
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145276.0636175-CDS-Ecto-sp8_S_contig9237:0..1161681145276.0636175-CDS-Ecto-sp8_S_contig9237:0..116Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9237 1..116 +
1681145276.0810447-CDS-Ecto-sp8_S_contig9237:2005..25671681145276.0810447-CDS-Ecto-sp8_S_contig9237:2005..2567Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9237 2006..2567 +
1681145276.0989027-CDS-Ecto-sp8_S_contig9237:2829..34681681145276.0989027-CDS-Ecto-sp8_S_contig9237:2829..3468Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9237 2830..3468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9237.30630.1prot_Ecto-sp8_S_contig9237.30630.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9237 1..3468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9237.30630.1

>prot_Ecto-sp8_S_contig9237.30630.1 ID=prot_Ecto-sp8_S_contig9237.30630.1|Name=mRNA_Ecto-sp8_S_contig9237.30630.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=439bp
DRSSSTTVAKFIQRFRQSEPLPREERQRRREEATEGDFWWTRSQENFGEA
TEAVRSRCNDIEDRPSTHVAEISTPPPYLESGEGKSPQPSIGSPSKQSES
DDCENERRMLDQVAVLEGSQTPLNSPPGRPAHDELPTQLSTSGSEAPELV
NDRLATAEVEAADTNVDETGVHVLVGLDAESLVQDKSINACDRGGDELET
LDARARTLLEECRQVLAPSSTITLDEVRSFTSSASQSNGPIITALDDLPE
ELEKRAWMLLNNCEEPPLLPTYNEEVLEVPCSSKPPALDAQGDLVRLGED
DGKTAKVLLRSNPPGGVVARPLGERAGAYHLDQERGCQPTCSSDVRNLGD
VNIDSIGRVYPTITDSRYSNNEHTWYSPALDSSGDQERMSSMTLATTPGE
EDWFRRDPVLSALLRRHDEVETELKRRRALEPNGDLVS*
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mRNA from alignment at Ecto-sp8_S_contig9237:1..3468+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9237.30630.1 ID=mRNA_Ecto-sp8_S_contig9237.30630.1|Name=mRNA_Ecto-sp8_S_contig9237.30630.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3468bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9237:1..3468+ (Ectocarpus species8 EcLAC_412)
GATCGATCTTCGTCAACAACGGTGGCCAAGTTCATCCAACGCTTTCGTCA
GAGTGAGCCCCTCCCACGTGAAGAACGGCAAAGACGCAGGGAAGAAGCGA
CGGAGGGAGATTTCTGGTACGTTTCTACTGCTGTGAGTCTTCGCTCCTCC
TTGTTTGTCAGCCTGTATACATTGCAACATGTATGCTACCAAAGATGTCT
GCTGACTTTTTACCTAAACATTGCTTATGGGTATCATATTTCAAGCGCAA
TCCGAGGGCACACCGGTATCTAACCTGCGTGCCTGAGGTGTTCGTGTTGT
AGGCTACAGAGTAGAGGCTGTGCCGTGTTTCGATATTATTATTAGACCAC
CCTCTTTCGGCAAATGGGATCGTGAATCAAGCGTTTTTTCTGTGTCCCCC
CGCAACCAGCAGGACATGTGTGTGCACGCTACAAGTACGGGCGCGGAAAT
ACACTGGTACCAATGACAGACACGCAGAAGTGCTTTCGCATCACTCTCCC
TTGTCTTTTGTGAACAATGTGTTGCTTTTTGTCCCCGAAAGGGAACGTGA
AAAGATTCCCGCGGGGACGAAAGTTGTTCATCCCCAGATTTGGTATCGTC
TTAGAATTACTGTAGTTAGTCGATTTTATGATTTTCTTTCGTTGACACGA
TAGGCAACTCGTGCTAACATCTCTACGACTTGATCATAGCAAGCCGGCAC
ATCGCCTCTGGCAAGATTCTAGCCCCTGGTTTGTGCAGAGAAGACTTGTA
TTCGATGCCATTTACTATTTTCACCTCAACAATGTGCTGCCTCGTGCGGC
ACGTGGTAACTAGTAGTACGCTACGGCACCCGAGCCAGTGTCGGAACATT
TTGACCGTGGGGACTGCGCACGTGGAATTCGACGGTCAGACCGCACCACA
TCTCCTGTTAGGCTGTTTTTTCGCGCTGCTACTGTAGTCTGACAGAATCA
CTATTGAGACCGCATCTTGTAGCCGTCATTCGTGAGCGCCCACGACGGCT
GCTGTGTACCGCATCCGACGCCCTCAAATACCACACCGAAAGGAGCGACC
TACATCACGGAGGGTCACAAGCCTCTCCAAGAAGGAAGCACAAAGCGAAC
TCATTCGCTTTTTCTTTAGGGTTGTGCCTGCAATACGGTTCCGCAGACAG
CTCACGGCAGATTCCGCCCAGGATTGATCTAGGGCTTTGATAGATCCGAA
TCTGGAGTACCGTTGAAGCCGAAGATCACCACACAGCTCTTGTACATGAT
GCTCCGACAGCGGTGCGGCCTTGATCTCGCTGAGGCAAGTCACGAACAAA
AAAATCGTTTCTCTTCCTCCCAAAGCACAAGGGAGGGGGGAGAAGCAAGG
GGATACATATCCAAGCCAGACAAGCGCGGAGCGTATTTTCTTTGCTCCCC
GAGCTATCTAAGCAAAGGAGGAGTGGCAATCGACCCATGACAGGTTTCGA
CGGAGAAAATACTGTTGATCGCTTGGTTGTGCCGTCGCTGACAGAGCTGG
TTAGGCGTCAATTGATGATATGGCCTAACCGCCAGTAGTATTCTTCGATG
TGTTTCTAATGACCAGCCTTCGAAGATAAATGATCGCCCAGATGGCCCAG
TGTTATTTTCAGTATCTGGACGAAACTACGCGTGTCGCCATGACACGATT
CGGAACAACTACGACGCCTCCTCAGAAGCGCCGGCTACAGAGATGTGGTC
TCCCGGAAATGTCCAGCCAATGCCGGCAGAAGAGCCAATGACCATACAAT
CAGAAATGACATCCAGAGTTCCATGTGGGGCGTCGCCCGTGACGACACCT
ACTCACGTATCCCTGCGCATGCGCTGCGGGTTGACACCCTTGTTTCTGAA
CACGAGCTAAATATATCACGCTTCCCCTGTCCTATTGCAAGCAGCCCCGC
TAGCGGACGACCGCGCTCGCGAGTACAGGTGTTGGCATAACTATGTTGCT
ACCATTGCCATAATTTTCTTGTGCACCTGGTGTTCTCTTCAATGCATATT
CGTAGGTGGACGCGATCTCAAGAGAATTTTGGTGAGGCAACTGAAGCGGT
GCGATCGAGGTGCAACGATATCGAAGACCGGCCAAGCACCCACGTCGCAG
AAATCTCGACTCCTCCTCCCTACCTGGAATCGGGCGAAGGCAAATCCCCT
CAACCCAGCATCGGAAGCCCTTCGAAGCAAAGCGAATCTGATGATTGCGA
GAACGAGCGCCGAATGCTTGACCAGGTTGCTGTCCTTGAGGGATCACAAA
CCCCCCTCAATTCACCTCCAGGGCGTCCTGCCCATGATGAATTGCCCACA
CAACTTTCCACGAGCGGGTCGGAGGCGCCTGAGCTCGTGAACGACAGACT
GGCGACGGCAGAGGTGGAGGCGGCCGATACAAATGTAGACGAGACGGGGG
TGCACGTGTTAGTTGGTCTTGACGCTGAAAGCTTGGTGCAGGACAAATCC
ATCAATGCGTGTGACAGAGGAGGTGACGAACTTGAGACTCTAGACGCCCG
CGCCCGCACTTTGCTGGAAGAATGCCGGCAGGTGCTCGCGCCGTCATCAA
CCATCACATTAGATGAGGTGCGAAGGGATGCTTCGGTTTAGGCCATTGAA
CGGGCACGAGTCTCTAAAAGCAACGCGTGTCCGACCAAGCAGTGTTGGCG
TGTTTGCCGTCGGGCTCGCACCATTGCCGTTCATGATGACTTTGGCAGAA
TAACGTGTTTTAAGTTTGTAAATCCAACACCCCAACCAATTTTTCGGCGA
GTCTGCAGGACGGAAGCTACCCTTGTCCGAAATGGGAGACACTCTCCAAA
CGATTGACAAACTGATTGGACGTGTGCAGGTGCGGTCGTTTACATCTTCT
GCTTCTCAAAGCAACGGGCCAATCATCACCGCGTTGGATGACCTCCCAGA
AGAGCTGGAGAAACGCGCGTGGATGCTTTTGAACAACTGCGAGGAACCGC
CACTGCTGCCAACGTACAACGAGGAGGTTCTAGAAGTGCCTTGCAGCAGC
AAACCTCCTGCTCTTGATGCACAGGGCGATCTCGTCCGCCTAGGTGAGGA
CGACGGAAAAACAGCAAAGGTGCTCCTTCGCAGCAACCCTCCGGGGGGCG
TCGTCGCTAGACCCTTGGGCGAAAGAGCAGGCGCGTACCACTTGGACCAG
GAACGTGGCTGCCAACCAACATGTTCGAGCGATGTTCGAAATTTGGGCGA
TGTTAATATCGACTCGATAGGGCGTGTTTACCCCACAATTACGGACTCAA
GATATTCGAACAACGAGCACACCTGGTACAGCCCAGCATTGGACAGCAGT
GGTGATCAAGAACGGATGTCGTCGATGACGCTTGCAACAACCCCCGGGGA
GGAAGACTGGTTTCGCCGAGATCCTGTACTCTCGGCATTGCTGCGGCGCC
ATGATGAGGTCGAGACGGAGCTCAAGAGGCGGCGAGCACTCGAACCAAAC
GGCGATTTGGTGTCCTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9237:1..3468+

>mRNA_Ecto-sp8_S_contig9237.30630.1 ID=mRNA_Ecto-sp8_S_contig9237.30630.1|Name=mRNA_Ecto-sp8_S_contig9237.30630.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1317bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9237:1..3468+ (Ectocarpus species8 EcLAC_412)
GATCGATCTTCGTCAACAACGGTGGCCAAGTTCATCCAACGCTTTCGTCA
GAGTGAGCCCCTCCCACGTGAAGAACGGCAAAGACGCAGGGAAGAAGCGA
CGGAGGGAGATTTCTGGTGGACGCGATCTCAAGAGAATTTTGGTGAGGCA
ACTGAAGCGGTGCGATCGAGGTGCAACGATATCGAAGACCGGCCAAGCAC
CCACGTCGCAGAAATCTCGACTCCTCCTCCCTACCTGGAATCGGGCGAAG
GCAAATCCCCTCAACCCAGCATCGGAAGCCCTTCGAAGCAAAGCGAATCT
GATGATTGCGAGAACGAGCGCCGAATGCTTGACCAGGTTGCTGTCCTTGA
GGGATCACAAACCCCCCTCAATTCACCTCCAGGGCGTCCTGCCCATGATG
AATTGCCCACACAACTTTCCACGAGCGGGTCGGAGGCGCCTGAGCTCGTG
AACGACAGACTGGCGACGGCAGAGGTGGAGGCGGCCGATACAAATGTAGA
CGAGACGGGGGTGCACGTGTTAGTTGGTCTTGACGCTGAAAGCTTGGTGC
AGGACAAATCCATCAATGCGTGTGACAGAGGAGGTGACGAACTTGAGACT
CTAGACGCCCGCGCCCGCACTTTGCTGGAAGAATGCCGGCAGGTGCTCGC
GCCGTCATCAACCATCACATTAGATGAGGTGCGGTCGTTTACATCTTCTG
CTTCTCAAAGCAACGGGCCAATCATCACCGCGTTGGATGACCTCCCAGAA
GAGCTGGAGAAACGCGCGTGGATGCTTTTGAACAACTGCGAGGAACCGCC
ACTGCTGCCAACGTACAACGAGGAGGTTCTAGAAGTGCCTTGCAGCAGCA
AACCTCCTGCTCTTGATGCACAGGGCGATCTCGTCCGCCTAGGTGAGGAC
GACGGAAAAACAGCAAAGGTGCTCCTTCGCAGCAACCCTCCGGGGGGCGT
CGTCGCTAGACCCTTGGGCGAAAGAGCAGGCGCGTACCACTTGGACCAGG
AACGTGGCTGCCAACCAACATGTTCGAGCGATGTTCGAAATTTGGGCGAT
GTTAATATCGACTCGATAGGGCGTGTTTACCCCACAATTACGGACTCAAG
ATATTCGAACAACGAGCACACCTGGTACAGCCCAGCATTGGACAGCAGTG
GTGATCAAGAACGGATGTCGTCGATGACGCTTGCAACAACCCCCGGGGAG
GAAGACTGGTTTCGCCGAGATCCTGTACTCTCGGCATTGCTGCGGCGCCA
TGATGAGGTCGAGACGGAGCTCAAGAGGCGGCGAGCACTCGAACCAAACG
GCGATTTGGTGTCCTAG
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