mRNA_Ecto-sp8_S_contig9230.30620.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9230.30620.1
Unique NamemRNA_Ecto-sp8_S_contig9230.30620.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9230.30620.1 vs. uniprot
Match: D7FHF4_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHF4_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 1.390e-33
Identity = 96/117 (82.05%), Postives = 99/117 (84.62%), Query Frame = 1 
Query:   16 TQEGTNSSSGAGEGAPGVALGEGQERDAGGAAADGHRGARSEGYDEAXXXXXXXXXXXXXXXXXXXXAEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQLEKSFKSYRHRK 366
            T+EGT+  SGAGEGAPG AL           AADGHRGARSEGY+EA XXXXXXXXXXXXXXXX   AEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQLEKSFKSYRHRK
Sbjct: 1062 TREGTSXXSGAGEGAPGAALXXXXXXXXXXXAADGHRGARSEGYNEAEXXXXXXXXXXXXXXXXREKAEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQLEKSFKSYRHRK 1178
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BLAST of mRNA_Ecto-sp8_S_contig9230.30620.1 vs. uniprot
Match: A0A6H5K1B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1B4_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 2.220e-32
Identity = 96/109 (88.07%), Postives = 97/109 (88.99%), Query Frame = 1 
Query:   13 GTQEGTNSSSGAGEGAPGVALGEGQERDAGGAAA-DGHRGARSEGYDEAXXXXXXXXXXXXXXXXXXXXAEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQLE 336
            GTQEGT+SS G GEGAPG A GEGQE DAG AAA DGHRGARSEGYDEA  X  XXXXXXXXXXXXXXXAEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQ E
Sbjct:  824 GTQEGTSSSGGRGEGAPGAAPGEGQEGDAGRAAAEDGHRGARSEGYDEAEAXAAXXXXXXXXXXXXXXXAEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQEE 932
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9230.30620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHF4_ECTSI1.390e-3382.05Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5K1B4_9PHAE2.220e-3288.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9230contigEcto-sp8_S_contig9230:4005..4812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size402
Hectar predicted targeting categoryother localisation
Exons2
Cds size402
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145275.6117802-CDS-Ecto-sp8_S_contig9230:4004..43341681145275.6117802-CDS-Ecto-sp8_S_contig9230:4004..4334Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9230 4005..4334 +
1681145275.6229315-CDS-Ecto-sp8_S_contig9230:4740..48121681145275.6229315-CDS-Ecto-sp8_S_contig9230:4740..4812Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9230 4741..4812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9230.30620.1prot_Ecto-sp8_S_contig9230.30620.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9230 4005..4812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9230.30620.1

>prot_Ecto-sp8_S_contig9230.30620.1 ID=prot_Ecto-sp8_S_contig9230.30620.1|Name=mRNA_Ecto-sp8_S_contig9230.30620.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=134bp
MGGGGTQEGTNSSSGAGEGAPGVALGEGQERDAGGAAADGHRGARSEGYD
EAEAEAAAAAREAEAEAEARERAEAKEVDLLRKLAVGLHPVLLVEPLTTV
REVTKWYTVQLEKSFKSYRHRKKKEKQAALEAR*
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mRNA from alignment at Ecto-sp8_S_contig9230:4005..4812+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9230.30620.1 ID=mRNA_Ecto-sp8_S_contig9230.30620.1|Name=mRNA_Ecto-sp8_S_contig9230.30620.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=808bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9230:4005..4812+ (Ectocarpus species8 EcLAC_412)
ATGGGTGGTGGTGGTACACAGGAGGGCACCAACAGCAGCAGCGGCGCAGG
CGAAGGCGCACCGGGAGTAGCTCTAGGGGAGGGGCAAGAAAGAGACGCTG
GGGGGGCGGCAGCAGATGGTCACCGCGGTGCTCGATCGGAGGGTTACGAC
GAGGCGGAGGCGGAGGCGGCGGCAGCCGCGAGGGAAGCTGAGGCTGAGGC
CGAGGCTAGGGAGAGGGCGGAGGCGAAGGAGGTCGATCTGCTGCGGAAGC
TGGCGGTGGGGCTGCACCCGGTGCTGCTGGTGGAGCCGCTGACGACCGTG
CGGGAAGTGACCAAGTGGTACACGGTTCAGGTAGATCATGTCGCTGCTGC
TGATGTGGTCGCTGTTGTTGTGGCTGCTGCTGCTGCTGCGGTTGCTGTTG
CGATTGTTGTGGTCGATTCTGATACGTGTTGTTGTTGTCGTCGTTGATGT
TTGTCGTGCTGTTGGTGTTGTTGTTGTTGTTGATAATATTTGTTGTTGTT
GTCGTTGTTCTTGGTGCTGAGGGGGCGGTGGTGGCGGGTGGTCGTTGTCC
TGCGTGAGTTGCCTACGATACCACACCCCATGGACCGATTTTTTTATGTC
ACAAATGTCAGAGCCGTTGCATTTACACCGCGTGCGTCATGTGCCCTATA
GAGCGGACGGTGTGCTTTTGGTTTGGTTGTTGAAACCAACCCTCGAAGCG
TCAACTGTTCCCCCGCGTTTTTTTTTTTGTCTTCAGCTCGAGAAATCGTT
CAAGAGCTACCGGCATAGGAAGAAGAAGGAGAAACAAGCGGCTTTGGAGG
CCAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9230:4005..4812+

>mRNA_Ecto-sp8_S_contig9230.30620.1 ID=mRNA_Ecto-sp8_S_contig9230.30620.1|Name=mRNA_Ecto-sp8_S_contig9230.30620.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9230:4005..4812+ (Ectocarpus species8 EcLAC_412)
ATGGGTGGTGGTGGTACACAGGAGGGCACCAACAGCAGCAGCGGCGCAGG
CGAAGGCGCACCGGGAGTAGCTCTAGGGGAGGGGCAAGAAAGAGACGCTG
GGGGGGCGGCAGCAGATGGTCACCGCGGTGCTCGATCGGAGGGTTACGAC
GAGGCGGAGGCGGAGGCGGCGGCAGCCGCGAGGGAAGCTGAGGCTGAGGC
CGAGGCTAGGGAGAGGGCGGAGGCGAAGGAGGTCGATCTGCTGCGGAAGC
TGGCGGTGGGGCTGCACCCGGTGCTGCTGGTGGAGCCGCTGACGACCGTG
CGGGAAGTGACCAAGTGGTACACGGTTCAGCTCGAGAAATCGTTCAAGAG
CTACCGGCATAGGAAGAAGAAGGAGAAACAAGCGGCTTTGGAGGCCAGGT
GA
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