mRNA_Ecto-sp8_S_contig92245.30613.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig92245.30613.1
Unique NamemRNA_Ecto-sp8_S_contig92245.30613.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig92245.30613.1 vs. uniprot
Match: A0A6H5K0X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0X3_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 2.760e-39
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 1 
Query:    1 MERTALEVAGLEDALGRGRKSRLGGVKDRPPNPGQSPLARLQGSQHEGDALLDLGREKIVAYDSPPQPQLGA 216
            MERTALEVAGLEDALGRGRKSRLGGVKDRPPNPGQ+PLARLQGSQHEGDALLDLGREKIVAYDSPPQPQLGA
Sbjct:  371 MERTALEVAGLEDALGRGRKSRLGGVKDRPPNPGQTPLARLQGSQHEGDALLDLGREKIVAYDSPPQPQLGA 442
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BLAST of mRNA_Ecto-sp8_S_contig92245.30613.1 vs. uniprot
Match: D8LF09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF09_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 3.670e-38
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 1 
Query:    1 MERTALEVAGLEDALGRGRKSRLGGVKDRPPNPGQSPLARLQGSQHEGDALLDLGREKIVAYDSPPQPQLGA 216
            MERTALEVAGLEDALGRGRKSRLGGVKDRPPNPGQSPLARLQGS+HEGDALLDLG+EKIVAYDSPPQPQLGA
Sbjct:  460 MERTALEVAGLEDALGRGRKSRLGGVKDRPPNPGQSPLARLQGSRHEGDALLDLGKEKIVAYDSPPQPQLGA 531
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig92245.30613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0X3_9PHAE2.760e-3998.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF09_ECTSI3.670e-3897.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig92245contigEcto-sp8_S_contig92245:27..393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size367
Hectar predicted targeting categoryother localisation
Exons1
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145275.032065-CDS-Ecto-sp8_S_contig92245:26..2451681145275.032065-CDS-Ecto-sp8_S_contig92245:26..245Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig92245 27..245 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145275.045831-UTR-Ecto-sp8_S_contig92245:245..3931681145275.045831-UTR-Ecto-sp8_S_contig92245:245..393Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig92245 246..393 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig92245.30613.1prot_Ecto-sp8_S_contig92245.30613.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig92245 27..245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig92245.30613.1

>prot_Ecto-sp8_S_contig92245.30613.1 ID=prot_Ecto-sp8_S_contig92245.30613.1|Name=mRNA_Ecto-sp8_S_contig92245.30613.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=73bp
MERTALEVAGLEDALGRGRKSRLGGVKDRPPNPGQSPLARLQGSQHEGDA
LLDLGREKIVAYDSPPQPQLGA*
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mRNA from alignment at Ecto-sp8_S_contig92245:27..393+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig92245.30613.1 ID=mRNA_Ecto-sp8_S_contig92245.30613.1|Name=mRNA_Ecto-sp8_S_contig92245.30613.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=367bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92245:27..393+ (Ectocarpus species8 EcLAC_412)
ATGGAGAGAACGGCGTTAGAGGTGGCCGGGCTGGAGGACGCGTTGGGGCG
TGGGCGCAAGTCACGGTTAGGCGGCGTGAAAGACCGGCCGCCAAATCCTG
GGCAGTCCCCTCTCGCTCGCTTGCAAGGCAGCCAGCATGAGGGCGACGCT
CTGCTAGATCTGGGAAGAGAAAAAATCGTTGCGTATGACTCCCCCCCGCA
GCCTCAACTTGGTGCGTAGAGTGCGCACGCAAGCGGTAAGTTTCGGTAGA
AAGGCAATAGAAAGGAGTAGCAGCTAGCTTAAGCCTCGGTGCCGTTAGAG
CAGGCCCGATGCTATGCTAATGTGCTATTTTTTTGTGTACCGTGGTGACA
TGTTAGGCAAGGCGTTA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig92245:27..393+

>mRNA_Ecto-sp8_S_contig92245.30613.1 ID=mRNA_Ecto-sp8_S_contig92245.30613.1|Name=mRNA_Ecto-sp8_S_contig92245.30613.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92245:27..393+ (Ectocarpus species8 EcLAC_412)
ATGGAGAGAACGGCGTTAGAGGTGGCCGGGCTGGAGGACGCGTTGGGGCG
TGGGCGCAAGTCACGGTTAGGCGGCGTGAAAGACCGGCCGCCAAATCCTG
GGCAGTCCCCTCTCGCTCGCTTGCAAGGCAGCCAGCATGAGGGCGACGCT
CTGCTAGATCTGGGAAGAGAAAAAATCGTTGCGTATGACTCCCCCCCGCA
GCCTCAACTTGGTGCGTAG
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