mRNA_Ecto-sp8_S_contig9224.30612.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9224.30612.1
Unique NamemRNA_Ecto-sp8_S_contig9224.30612.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9224.30612.1 vs. uniprot
Match: A0A835YS61_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS61_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.080e-44
Identity = 82/129 (63.57%), Postives = 102/129 (79.07%), Query Frame = 1 
Query:   94 IRVAATDNLKRLTDHFGTQWARDHILPKVVQMHIHSSYLHRMTALYAIQVLTESLDVEMLSKEVLPLVLRMASDPVPNIRFNVSKTLEKMAPRLENDAVEAQVRPALDSLVDDADRDVRYFTRKAMQAV 480
            +R+AA  NL+RL+  FG  WAR H++PK+ +MH ++SYLHRMTAL A+QVL E +D ++L ++VLPLVL MA DPVPNIRFNVSKTL  +APRL   AVE  VRPAL +LVDD DRDVRYF RKA+ A+
Sbjct:  472 VRIAAAANLRRLSALFGADWARAHVVPKLAEMHANASYLHRMTALNAVQVLAEDMDPDLLQRDVLPLVLEMAHDPVPNIRFNVSKTLTALAPRLGGGAVENAVRPALSALVDDGDRDVRYFARKAIAAL 600
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BLAST of mRNA_Ecto-sp8_S_contig9224.30612.1 vs. uniprot
Match: L8HMM8_ACACA (HEAT repeat containing protein (Fragment) n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HMM8_ACACA)

HSP 1 Score: 155 bits (392), Expect = 1.660e-41
Identity = 77/150 (51.33%), Postives = 113/150 (75.33%), Query Frame = 1 
Query:   34 FFNDKLCDICLAWLGDNVFSIRVAATDNLKRLTDHFGTQWARDHILPKVVQMHIHSSYLHRMTALYAIQVLTESLDV-EMLSKEVLPLVLRMASDPVPNIRFNVSKTLEKMAPRLENDAVEAQVRPALDSLVDDADRDVRYFTRKAMQAV 480
            FF++KL  +C+ WLGD VFSIR AAT+NLK+LT+ FG +WA+++I+PKV+ ++ H +YL+RMT L+AI VL E   + E++   +LPLV+RMA DPVPNIRFNV+KTL  +   L+   V+ +VRP L +L  D DRDV+++  +A++A+
Sbjct:  431 FFDEKLGFLCMTWLGDCVFSIREAATNNLKKLTEVFGVEWAQNNIIPKVLALYTHPNYLYRMTTLFAISVLAEVKGMKEVIQNSMLPLVIRMADDPVPNIRFNVAKTLYTLIKYLDATVVQNKVRPCLQNLEKDKDRDVQFYAGRALRAI 580
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BLAST of mRNA_Ecto-sp8_S_contig9224.30612.1 vs. uniprot
Match: UPI000E6B36CA (serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform X2 n=1 Tax=Piliocolobus tephrosceles TaxID=591936 RepID=UPI000E6B36CA)

HSP 1 Score: 155 bits (391), Expect = 1.780e-41
Identity = 73/153 (47.71%), Postives = 114/153 (74.51%), Query Frame = 1 
Query:   22 QGAQFFNDKLCDICLAWLGDNVFSIRVAATDNLKRLTDHFGTQWARDHILPKVVQMHIHSSYLHRMTALYAIQVLTESLDVEMLSKEVLPLVLRMASDPVPNIRFNVSKTLEKMAPRLENDAVEAQVRPALDSLVDDADRDVRYFTRKAMQAV 480
            +G +FF++KL  +C+AWL D+V++IR AAT+NL +L   FGT+WA++ I+PKV+ M    +YLHRMT L+ I  L+E+   E+ +K++LP+VL+MA D V N+RFNV+K+L+K+ P L+ +A++ +V+P L  L  D D DV+YF ++A+ AV
Sbjct:  343 KGVEFFDEKLNSLCMAWLVDHVYAIREAATNNLMKLVQKFGTEWAQNTIVPKVLVMANDPNYLHRMTTLFCINALSEACGQEITTKQMLPIVLKMAGDQVANVRFNVAKSLQKIGPILDTNALQGEVKPVLQKLGQDEDMDVKYFAQEAISAV 495
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BLAST of mRNA_Ecto-sp8_S_contig9224.30612.1 vs. uniprot
Match: A0A2P4XX94_9STRA (Protein phosphatase 2 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XX94_9STRA)

HSP 1 Score: 145 bits (367), Expect = 3.080e-41
Identity = 68/152 (44.74%), Postives = 108/152 (71.05%), Query Frame = 1 
Query:   25 GAQFFNDKLCDICLAWLGDNVFSIRVAATDNLKRLTDHFGTQWARDHILPKVVQMHIHSSYLHRMTALYAIQVLTESLDVEMLSKEVLPLVLRMASDPVPNIRFNVSKTLEKMAPRLENDAVEAQVRPALDSLVDDADRDVRYFTRKAMQAV 480
            G  +F ++L ++C+AWL DNV+SIR AAT NLK LT+ FG  WAR  ++P++  MH ++++LHR+T+LYA++VL  ++  E +   ++PLV+ +A DPVPNIRFNV+KTLE + P+++ +     V P L +L+ D D DV +F ++A+  +
Sbjct:   42 GRDYFEEQLSELCMAWLVDNVYSIREAATINLKNLTERFGADWARTSVVPRISTMHSNANFLHRLTSLYAVKVLC-AMTPETIQTLLIPLVVELAQDPVPNIRFNVAKTLEVLGPKVDAEVCTNTVTPCLTALLQDGDADVVFFAQRALSTL 192
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BLAST of mRNA_Ecto-sp8_S_contig9224.30612.1 vs. uniprot
Match: A0A397FX85_9STRA (Uncharacterized protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FX85_9STRA)

HSP 1 Score: 152 bits (385), Expect = 8.710e-41
Identity = 74/149 (49.66%), Postives = 104/149 (69.80%), Query Frame = 1 
Query:   25 GAQFFNDKLCDICLAWLGDNVFSIRVAATDNLKRLTDHFGTQWARDHILPKVVQMHIHSSYLHRMTALYAIQVLTESLDVEMLSKEVLPLVLRMASDPVPNIRFNVSKTLEKMAPRLENDAVEAQVRPALDSLVDDADRDVRYFTRKAM 471
            G  +F + L ++C+ WL D VFSIR AAT NL RL  HFG  WA  H+LP++  MH++++YL+RM +L+A +VL   +  + L   +LPLVL++ASDPVPNIRFNV+KTLE MA +L++ A +  V P L +L  D D DV+YF  +A+
Sbjct:  373 GVTYFEEHLMEMCMGWLCDVVFSIREAATLNLHRLAQHFGVAWAHAHVLPRIASMHVNANYLYRMISLHAAKVLAPLMSTDQLQHSILPLVLQLASDPVPNIRFNVAKTLETMAGQLDDAAKQTLVGPVLHTLATDPDGDVQYFAARAI 521
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BLAST of mRNA_Ecto-sp8_S_contig9224.30612.1 vs. uniprot
Match: A0A5F9D2S5_RABIT (Mannosyltransferase n=1 Tax=Oryctolagus cuniculus TaxID=9986 RepID=A0A5F9D2S5_RABIT)

HSP 1 Score: 154 bits (389), Expect = 9.420e-41
Identity = 73/154 (47.40%), Postives = 113/154 (73.38%), Query Frame = 1 
Query:   22 QGAQFFNDKLCDICLAWLGDNVFSIRVAATDNLKRLTDHFGTQWARDHILPKVVQMHIHSSYLHRMTALYAIQVLTESLDVEMLSKEVLPLVLRMASDPVPNIRFNVSKTLEKMAPRLENDAVEAQVRPALDSLVDDADRDVRYFTRKAMQAVS 483
            QG +FF++KL  +C+AWL D+V++IR AAT+NL +L   FGT+WA++ I+PKV+ M    +YLHRMT L+ I  L+E+   E+ +K++LP+VL+MA D V N+RFNV+K+L+K+ P L+  A++ +V+P L  L  D D DV+YF ++A+  V+
Sbjct:  393 QGVEFFDEKLNSLCMAWLVDHVYAIREAATNNLMKLVQKFGTEWAQNTIVPKVLVMANDPNYLHRMTTLFCINALSEACGQEITTKQMLPIVLKMAGDQVANVRFNVAKSLQKIGPILDTAALQGEVKPVLQKLGQDEDMDVKYFAQEAISVVA 546
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BLAST of mRNA_Ecto-sp8_S_contig9224.30612.1 vs. uniprot
Match: A0A8B9XBT9_BOSMU (Protein phosphatase 2 scaffold subunit Abeta n=9 Tax=Boreoeutheria TaxID=1437010 RepID=A0A8B9XBT9_BOSMU)

HSP 1 Score: 153 bits (387), Expect = 1.080e-40
Identity = 72/153 (47.06%), Postives = 114/153 (74.51%), Query Frame = 1 
Query:   25 GAQFFNDKLCDICLAWLGDNVFSIRVAATDNLKRLTDHFGTQWARDHILPKVVQMHIHSSYLHRMTALYAIQVLTESLDVEMLSKEVLPLVLRMASDPVPNIRFNVSKTLEKMAPRLENDAVEAQVRPALDSLVDDADRDVRYFTRKAMQAVS 483
            G +FF++KL  +C+AWL D+V++IR AAT+NL +L   FGT+WA++ I+PKV+ M    +YLHRMT L+ I  L+E+   E+ +K++LP+VL+MA D V N+RFNV+K+L+K+ P L+ +A++ +V+P L  L  D D DV+YF ++A+ A++
Sbjct:  382 GVEFFDEKLNSLCMAWLVDHVYAIREAATNNLMKLVQKFGTEWAQNTIVPKVLVMANDPNYLHRMTTLFCINALSEACGQEITTKQMLPIVLKMAGDQVANVRFNVAKSLQKIGPILDTNALQEEVKPVLQKLGQDEDMDVKYFAQEAISAMA 534
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BLAST of mRNA_Ecto-sp8_S_contig9224.30612.1 vs. uniprot
Match: UPI0009A2E30F (serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A2E30F)

HSP 1 Score: 145 bits (365), Expect = 2.320e-40
Identity = 71/152 (46.71%), Postives = 105/152 (69.08%), Query Frame = 1 
Query:   25 GAQFFNDKLCDICLAWLGDNVFSIRVAATDNLKRLTDHFGTQWARDHILPKVVQMHIHSSYLHRMTALYAIQVLTESLDVEMLSKEVLPLVLRMASDPVPNIRFNVSKTLEKMAPRLENDAVEAQVRPALDSLVDDADRDVRYFTRKAMQAV 480
            G  FFN+KL  +C+AWL D+V++IR AAT+NLK+LT  FG  WA++ ILPKV+ M  + +YLHRMT L+ +  L E    ++ +K +LP +LRM SD V N+RFNV+KTL+K+   L+   +  +V+P L+ L  D D DV+YF ++A+  +
Sbjct:   86 GVDFFNEKLNSLCMAWLVDHVYAIREAATNNLKKLTQKFGKVWAQNTILPKVLSMSTNPNYLHRMTTLFCVNALYEVCGKDITTKIMLPTILRMGSDAVANVRFNVAKTLQKIGSILDYSPLHNEVKPVLEKLSRDQDIDVKYFAQEALNVL 237
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BLAST of mRNA_Ecto-sp8_S_contig9224.30612.1 vs. uniprot
Match: A0A433Q4I3_9FUNG (Complex between Pp2a-specific methylesterase Pme-1 and Pp2a core enzyme n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433Q4I3_9FUNG)

HSP 1 Score: 144 bits (364), Expect = 3.110e-40
Identity = 72/157 (45.86%), Postives = 110/157 (70.06%), Query Frame = 1 
Query:   25 GAQFFNDKLCDICLAWLGDNVFSIRVAATDNLKRLTDHFGTQWARDHILPKVVQMHIHSSYLHRMTALYAIQVLTESLDVEMLSKEVLPLVLRMASDPVPNIRFNVSKTLEKMAPRLENDA-----VEAQVRPALDSLVDDADRDVRYFTRKAMQAV 480
            G  FF++KL ++C++WL D VFSIR AAT NL++LT+ FG +WA+  I+PKV+ M  + +YL+RMT ++AI  ++ ++  +++   +LP V  + +DP+PNIRFNV+K+LE +AP L   A     VE+ VRPAL  L +D+D DVR+F  +A+  V
Sbjct:   54 GVAFFDEKLGNLCMSWLRDAVFSIRDAATGNLRKLTEVFGVEWAKQTIIPKVLAMANNPNYLYRMTTIFAITTMSPAVTPQVIKDHILPTVQSLVADPIPNIRFNVAKSLETLAPLLRASADTAPLVESDVRPALTKLNEDSDNDVRFFAHRALITV 210
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BLAST of mRNA_Ecto-sp8_S_contig9224.30612.1 vs. uniprot
Match: H0VNN4_CAVPO (Protein phosphatase 2 scaffold subunit Abeta n=12 Tax=Eutheria TaxID=9347 RepID=H0VNN4_CAVPO)

HSP 1 Score: 150 bits (378), Expect = 1.270e-39
Identity = 71/153 (46.41%), Postives = 112/153 (73.20%), Query Frame = 1 
Query:   25 GAQFFNDKLCDICLAWLGDNVFSIRVAATDNLKRLTDHFGTQWARDHILPKVVQMHIHSSYLHRMTALYAIQVLTESLDVEMLSKEVLPLVLRMASDPVPNIRFNVSKTLEKMAPRLENDAVEAQVRPALDSLVDDADRDVRYFTRKAMQAVS 483
            G +FF++KL  +C+AWL D+V++IR AAT+NL +L   FGT+WA++ I+PKV+ M    +YLHRMT L+ I  L+E+   E+ +K++LP+VL+MA D V N+RFNV+K+L+K+ P L+ DA++ +V+  L  L  D D DV+YF ++A+  ++
Sbjct:  402 GMEFFDEKLNSLCMAWLVDHVYAIREAATNNLMKLVQKFGTEWAQNTIVPKVLVMANDPNYLHRMTTLFCINALSEACGREITTKQMLPIVLKMAGDQVANVRFNVAKSLQKIGPLLDTDALQGEVKLVLQKLGQDEDMDVKYFAQEAISVLA 554
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9224.30612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YS61_9STRA1.080e-4463.57Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
L8HMM8_ACACA1.660e-4151.33HEAT repeat containing protein (Fragment) n=1 Tax=... [more]
UPI000E6B36CA1.780e-4147.71serine/threonine-protein phosphatase 2A 65 kDa reg... [more]
A0A2P4XX94_9STRA3.080e-4144.74Protein phosphatase 2 (Fragment) n=1 Tax=Phytophth... [more]
A0A397FX85_9STRA8.710e-4149.66Uncharacterized protein n=7 Tax=Aphanomyces astaci... [more]
A0A5F9D2S5_RABIT9.420e-4147.40Mannosyltransferase n=1 Tax=Oryctolagus cuniculus ... [more]
A0A8B9XBT9_BOSMU1.080e-4047.06Protein phosphatase 2 scaffold subunit Abeta n=9 T... [more]
UPI0009A2E30F2.320e-4046.71serine/threonine-protein phosphatase 2A 65 kDa reg... [more]
A0A433Q4I3_9FUNG3.110e-4045.86Complex between Pp2a-specific methylesterase Pme-1... [more]
H0VNN4_CAVPO1.270e-3946.41Protein phosphatase 2 scaffold subunit Abeta n=12 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9224contigEcto-sp8_S_contig9224:4559..7100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score157.5
Seed ortholog evalue5.1e-36
Seed eggNOG ortholog4792.ETI43715
Preferred namePPP2R1B
Model size495
KEGG koko:K03456
KEGG Pathwayko03015,ko04071,ko04111,ko04113,ko04114,ko04151,ko04152,ko04261,ko04350,ko04390,ko04391,ko04530,ko04728,ko04730,ko05142,ko05160,ko05165,map03015,map04071,map04111,map04113,map04114,map04151,map04152,map04261,map04350,map04390,map04391,map04530,map04728,map04730,map05142,map05160,map05165
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000086,GO:0000159,GO:0000184,GO:0000188,GO:0000212,GO:0000226,GO:0000278,GO:0000280,GO:0000775,GO:0000819,GO:0000910,GO:0000956,GO:0001558,GO:0001932,GO:0001933,GO:0003674,GO:0003823,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005694,GO:0005737,GO:0005739,GO:0005813,GO:0005814,GO:0005815,GO:0005816,GO:0005819,GO:0005826,GO:0005829,GO:0005856,GO:0005938,GO:0006139,GO:0006275,GO:0006355,GO:0006396,GO:0006401,GO:0006402,GO:0006464,GO:0006469,GO:0006470,GO:0006629,GO:0006643,GO:0006665,GO:0006672,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006914,GO:0006915,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007059,GO:0007062,GO:0007088,GO:0007096,GO:0007098,GO:0007099,GO:0007135,GO:0007143,GO:0007154,GO:0007163,GO:0007165,GO:0007275,GO:0007276,GO:0007292,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008287,GO:0008380,GO:0009056,GO:0009057,GO:0009653,GO:0009790,GO:0009792,GO:0009889,GO:0009892,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010389,GO:0010467,GO:0010468,GO:0010556,GO:0010563,GO:0010564,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010921,GO:0010941,GO:0010942,GO:0010948,GO:0010974,GO:0012501,GO:0012505,GO:0015629,GO:0015630,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0017151,GO:0019208,GO:0019219,GO:0019220,GO:0019222,GO:0019439,GO:0019538,GO:0019888,GO:0019899,GO:0019932,GO:0019953,GO:0022402,GO:0022406,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030111,GO:0030155,GO:0030234,GO:0030308,GO:0030863,GO:0030864,GO:0030952,GO:0031023,GO:0031029,GO:0031030,GO:0031033,GO:0031034,GO:0031323,GO:0031324,GO:0031326,GO:0031399,GO:0031400,GO:0031967,GO:0031975,GO:0031991,GO:0032045,GO:0032153,GO:0032155,GO:0032268,GO:0032269,GO:0032465,GO:0032466,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032954,GO:0032955,GO:0032956,GO:0032970,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0033673,GO:0034613,GO:0034622,GO:0034641,GO:0034655,GO:0035303,GO:0035304,GO:0035330,GO:0035331,GO:0035556,GO:0035770,GO:0036211,GO:0036464,GO:0040008,GO:0042221,GO:0042325,GO:0042326,GO:0042509,GO:0042532,GO:0042578,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043086,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043405,GO:0043407,GO:0043408,GO:0043409,GO:0043412,GO:0043549,GO:0043603,GO:0043666,GO:0043900,GO:0043933,GO:0044085,GO:0044087,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044255,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044380,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044450,GO:0044464,GO:0044703,GO:0044732,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0045121,GO:0045132,GO:0045144,GO:0045495,GO:0045595,GO:0045786,GO:0045859,GO:0045926,GO:0045930,GO:0045936,GO:0046425,GO:0046426,GO:0046483,GO:0046578,GO:0046580,GO:0046626,GO:0046627,GO:0046700,GO:0046982,GO:0046983,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048609,GO:0048856,GO:0050730,GO:0050732,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051056,GO:0051058,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051174,GO:0051177,GO:0051179,GO:0051225,GO:0051231,GO:0051232,GO:0051239,GO:0051246,GO:0051248,GO:0051252,GO:0051276,GO:0051298,GO:0051301,GO:0051302,GO:0051304,GO:0051306,GO:0051321,GO:0051336,GO:0051338,GO:0051348,GO:0051445,GO:0051493,GO:0051640,GO:0051641,GO:0051704,GO:0051716,GO:0051726,GO:0051754,GO:0051782,GO:0051783,GO:0060255,GO:0060271,GO:0060281,GO:0060284,GO:0060293,GO:0060561,GO:0061492,GO:0061509,GO:0061919,GO:0061983,GO:0065003,GO:0065007,GO:0065009,GO:0070192,GO:0070262,GO:0070601,GO:0070727,GO:0070925,GO:0070938,GO:0071704,GO:0071840,GO:0071900,GO:0071901,GO:0071944,GO:0071988,GO:0072686,GO:0072698,GO:0080090,GO:0090304,GO:0090443,GO:0097711,GO:0098534,GO:0098589,GO:0098687,GO:0098772,GO:0098805,GO:0098813,GO:0098857,GO:0099568,GO:0110020,GO:0120031,GO:0120036,GO:0140013,GO:0140014,GO:0140056,GO:0140096,GO:1900076,GO:1900077,GO:1900193,GO:1901360,GO:1901361,GO:1901564,GO:1901575,GO:1901891,GO:1901892,GO:1901987,GO:1901990,GO:1902412,GO:1902413,GO:1902440,GO:1902494,GO:1902531,GO:1902532,GO:1902742,GO:1902749,GO:1903046,GO:1903047,GO:1903293,GO:1903429,GO:1903436,GO:1903437,GO:1903506,GO:1903538,GO:1904892,GO:1904893,GO:1905508,GO:1905742,GO:1905879,GO:1990405,GO:1990904,GO:2000112,GO:2000241,GO:2001141,GO:2001233,GO:2001235,GO:2001236,GO:2001238,GO:2001239,GO:2001241
Exons5
EggNOG free text desc.HEAT repeats
EggNOG OGs3QE31@4776,KOG0211@1,KOG0211@2759
Cds size480
COG Functional cat.T
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9224.30612.1prot_Ecto-sp8_S_contig9224.30612.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9224 4559..7085 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145274.9267178-CDS-Ecto-sp8_S_contig9224:4558..46751681145274.9267178-CDS-Ecto-sp8_S_contig9224:4558..4675Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9224 4559..4675 -
1681145274.9451494-CDS-Ecto-sp8_S_contig9224:4913..50121681145274.9451494-CDS-Ecto-sp8_S_contig9224:4913..5012Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9224 4914..5012 -
1681145274.9587805-CDS-Ecto-sp8_S_contig9224:6166..62681681145274.9587805-CDS-Ecto-sp8_S_contig9224:6166..6268Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9224 6167..6268 -
1681145274.9694498-CDS-Ecto-sp8_S_contig9224:6570..66991681145274.9694498-CDS-Ecto-sp8_S_contig9224:6570..6699Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9224 6571..6699 -
1681145274.9804363-CDS-Ecto-sp8_S_contig9224:7052..70851681145274.9804363-CDS-Ecto-sp8_S_contig9224:7052..7085Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9224 7053..7085 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145274.992661-UTR-Ecto-sp8_S_contig9224:7085..71001681145274.992661-UTR-Ecto-sp8_S_contig9224:7085..7100Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9224 7086..7100 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9224.30612.1

>prot_Ecto-sp8_S_contig9224.30612.1 ID=prot_Ecto-sp8_S_contig9224.30612.1|Name=mRNA_Ecto-sp8_S_contig9224.30612.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=160bp
MWQGAQFFNDKLCDICLAWLGDNVFSIRVAATDNLKRLTDHFGTQWARDH
ILPKVVQMHIHSSYLHRMTALYAIQVLTESLDVEMLSKEVLPLVLRMASD
PVPNIRFNVSKTLEKMAPRLENDAVEAQVRPALDSLVDDADRDVRYFTRK
AMQAVSAMG*
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mRNA from alignment at Ecto-sp8_S_contig9224:4559..7100-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9224.30612.1 ID=mRNA_Ecto-sp8_S_contig9224.30612.1|Name=mRNA_Ecto-sp8_S_contig9224.30612.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2542bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9224:4559..7100- (Ectocarpus species8 EcLAC_412)
TCCCCCCAAACCGGAATGTGGCAGGGGGCACAATTCTTCAACGATAAGGT
AAGGTGTGTACGTACGTAAGATCAAGGGAATCGTACTTTTTCTACAACCA
GTATTGCGCACACCGTCGGCGGGGTATTTTTCATTTCTTTCGCCGATAAG
GGCCTGGGATAGAGTAGCAATGAACTCATGGCGGTGAATGCATATGATGA
CCAACTTGTATTTCTACGGTTCCGCGAGCAGTAAATAGCGATATCTCTCC
TGTGGGAAACAGGCTCGACAGGAGGACAAGATAGGTGGCTTTTTATTTCG
TGGTTTTGGACTACACTCTCGTTCTTGTTTTTTATCAACACGTTGGTAAC
AATTGCACCCCTGTTTCCTCCCTCCCCCCATCGACGCCAATCTGCCGGCA
GCTGTGCGACATTTGCCTGGCCTGGTTGGGCGACAACGTGTTCAGTATTA
GGGTAGCGGCCACGGACAACCTCAAACGACTCACAGATCACTTCGGGACG
CAGTGGGCGCGAGATCACATTTTGCCGAAGGTGACCTGCGTACCACGTTC
AACGAGCAACGCATGTGTTCTTTTCATTTTTTTTCTGCCAATACTGCAAC
GTCTGCGTGACAGAGAGAGGGTTTTTCCCCGAGCTGTCCCTTCCTATTTT
GCGCGTTTCTGTTTGGGAGCACGTTTGATGGGAAGCGAGATCGTATATCC
TGAGATGTGCATCGCTTCCCTCGCCCACGTGTCCCGCCGACAGCAGTTCG
TTTTTGCGTCTGACCAACTAACATTCTGCTGCGTTCGTTCGGTGTCGGCC
TCTGCATGGACGAAAAACACTATCCCGAGCAGGTGGTACAGATGCACATC
CACAGCAGTTACCTTCATCGCATGACGGCCCTGTACGCGATACAAGTCCT
CACCGAATCGCTCGACGTCGAGATGCTTAGCAAGGTGTGTATGATGAATT
TGTCGGGATGGCTTCACCCCGCGTTCGGTTAATCTCTTGAGTCTTGAGTG
AGCTTCAAGTGGGTATGGTCGGGCGGGTAGTTTGTTGAAGGAAGTGAGAC
ATTTCTGAGGGACAGCACATGCTCCGATTTGTGGCCCATCTCCGACGGCT
GTTTTGTTGTGCTGGGATGATCTAGCGCACAGATGAGATGGGGGGTGAGT
GTGTGCTCCCCTCAATCTGCGTTGATATACCCTAAGATGAACCGAGAACG
GTAAGAACGGTACCTTTGTGGGCGAGACGATCTGGTGCAGGAAGAAAAAC
ATGAAGCAAAGGGTATTAACAAGGGTACCCGTGACGGCGCGAAATTTTGG
GTCTCGTGGACGTGATTCAGGCTGGACATTGCCAGGAGACAACGATAAGA
CCGGGTGTAGATGGCGCCATGGGCAAAGGACCAGGCGAAAAGAGCATGTG
TTAATGCTCCGAAGAAAGGACTCGGACCTGCTATGAACGAGGAATATGTC
ACAGAAGGACAGAGGAAGAAGATACGAAAGCAGACACATGCGGCAAAATT
CACTAGAATCTATTGTAAATCTAGGAGGAAACAGGGACGCCTTTCGAGAT
GGACGCAACATGACTCACATGGCTTCGATGCCATGGTTATATGGCACGTT
TATATTTCCACGAGGAGAAAACGCAGGGGGGCGATAGCTGTAGTTGGTGG
CACGATGCCAGTGTGTGCGTAGGACAGGGTAGGAGATGAGCTAAGCAAAA
AAGGTGGCGGTATGGCATACGGCAGGAACAAGATCGCCCGGCTGTTGACG
GTGTCGCTATCACTCCGTCTCTGAAGTATGCGCACTCGGCCGAACGACCA
TTTAGAGAAGACAAGCGGCAGTCGATAAGGGTCCCCTCTCACCCTTCTTA
CCATTTTTAGATCCTTTTCGGCGGATAAAATTCAGTGGGTGCCGGTATGT
GCCCAGAAAATCCCCCCCCACTTGTACCAGACCGGCACTATTCGAAGCAC
TGACAATGACTTGAGCGTGTGCCCGCGGAAAACATCGGCACCATGCCGGG
CATTGGCACTGTTCAACCGGCACTGAACGTGGACCCCGTCTATTCCCTTC
CGTCCCTGATCGCTGCTGTTCTGAATGGTGAAAATCAGGAGGTGCTCCCG
CTGGTGCTGCGAATGGCCTCAGACCCCGTGCCAAACATTCGCTTCAACGT
GTCGAAGACGCTCGAGAAGATGGCTCCGCGTCTCGAGGTATGCCAAGTTC
GATGCATTTTACTTACTTAGAAGGCTACACAAAAAGTAATCATGTTGGCG
TTTGGCGACTCTTGCTCCACTGTCGTCGTGCTCGTAACTTGTTTGTCTGC
AGCCGGTGCTCTGCTCTACTCTGTAGCACTATCTCGCTAATTAACCCCAC
ACCGGACGCGCTTTTGTTATTGTTTGATGACTTTGTCTTTTTTGCTCGAC
TGGCCGTTGCCCACCTCGCGAGCAGAACGATGCCGTAGAGGCCCAGGTGA
GACCAGCACTGGACAGCCTGGTGGACGACGCGGACCGCGACGTACGGTAC
TTTACTAGAAAAGCCATGCAGGCGGTGTCGGCGATGGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9224:4559..7100-

>mRNA_Ecto-sp8_S_contig9224.30612.1 ID=mRNA_Ecto-sp8_S_contig9224.30612.1|Name=mRNA_Ecto-sp8_S_contig9224.30612.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9224:4559..7100- (Ectocarpus species8 EcLAC_412)
ATGTGGCAGGGGGCACAATTCTTCAACGATAAGCTGTGCGACATTTGCCT
GGCCTGGTTGGGCGACAACGTGTTCAGTATTAGGGTAGCGGCCACGGACA
ACCTCAAACGACTCACAGATCACTTCGGGACGCAGTGGGCGCGAGATCAC
ATTTTGCCGAAGGTGGTACAGATGCACATCCACAGCAGTTACCTTCATCG
CATGACGGCCCTGTACGCGATACAAGTCCTCACCGAATCGCTCGACGTCG
AGATGCTTAGCAAGGAGGTGCTCCCGCTGGTGCTGCGAATGGCCTCAGAC
CCCGTGCCAAACATTCGCTTCAACGTGTCGAAGACGCTCGAGAAGATGGC
TCCGCGTCTCGAGAACGATGCCGTAGAGGCCCAGGTGAGACCAGCACTGG
ACAGCCTGGTGGACGACGCGGACCGCGACGTACGGTACTTTACTAGAAAA
GCCATGCAGGCGGTGTCGGCGATGGGGTGA
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