mRNA_Ecto-sp8_S_contig92160.30598.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig92160.30598.1
Unique NamemRNA_Ecto-sp8_S_contig92160.30598.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig92160.30598.1 vs. uniprot
Match: A0A0U2V6K7_9MAXI (60S ribosomal protein L27a n=5 Tax=Calanoida TaxID=6833 RepID=A0A0U2V6K7_9MAXI)

HSP 1 Score: 252 bits (644), Expect = 3.590e-84
Identity = 125/150 (83.33%), Postives = 133/150 (88.67%), Query Frame = 1
Query:    1 MASGLKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANNANLYQPGINLDKLWSLVSEQTRTKYAGQTAKAPVIDCSRAGYFKVLGKGALPKQPVIVKARFFSRKAEEKIKAVGGACILTAQ 450
            M++  KKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINFDKY   YFGKVGMRNFHVH N +  + P INLDKLW+LVSEQTR KYA    KAPVIDCSRAG+FKVLGKG LPKQPVIVKARFFSR+AEEKIKAVGGAC+LTAQ
Sbjct:    1 MSTQKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINFDKYXXXYFGKVGMRNFHVHPNMSIHHCPAINLDKLWTLVSEQTRKKYADSKDKAPVIDCSRAGFFKVLGKGVLPKQPVIVKARFFSRRAEEKIKAVGGACVLTAQ 150          
BLAST of mRNA_Ecto-sp8_S_contig92160.30598.1 vs. uniprot
Match: A0A0U2IG41_ACAPC (60S ribosomal protein L27a n=2 Tax=Acartia pacifica TaxID=335913 RepID=A0A0U2IG41_ACAPC)

HSP 1 Score: 249 bits (635), Expect = 8.450e-83
Identity = 122/149 (81.88%), Postives = 131/149 (87.92%), Query Frame = 1
Query:    1 MASGLKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANNANLYQPGINLDKLWSLVSEQTRTKYAGQTAKAPVIDCSRAGYFKVLGKGALPKQPVIVKARFFSRKAEEKIKAVGGACILTA 447
            M++  KKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINFDKY   YFGKVGMRNFHVH N +N ++P INLDKLW+LV E+TR K A  T  APVIDCS AGYFKVLGKG LPKQPVIVKARFFSR+AEEKIKAVGGAC+LTA
Sbjct:    1 MSTNKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINFDKYXXXYFGKVGMRNFHVHPNVSNQFRPAINLDKLWTLVPEETRVKAAKDTKTAPVIDCSGAGYFKVLGKGILPKQPVIVKARFFSRRAEEKIKAVGGACVLTA 149          
BLAST of mRNA_Ecto-sp8_S_contig92160.30598.1 vs. uniprot
Match: C1BT74_LEPSM (60S ribosomal protein L27a n=2 Tax=Caligidae TaxID=72034 RepID=C1BT74_LEPSM)

HSP 1 Score: 247 bits (631), Expect = 3.320e-82
Identity = 122/149 (81.88%), Postives = 130/149 (87.25%), Query Frame = 1
Query:    1 MASGLKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANNANLYQPGINLDKLWSLVSEQTRTKYAGQTAKAPVIDCSRAGYFKVLGKGALPKQPVIVKARFFSRKAEEKIKAVGGACILTA 447
            M++  KKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINFDKY   YFGKVGMRNFHVHA+  N Y P +NLDKLWSLVSEQTR KYA    KAPVID ++AGYFKVLGKG LP QPVIVKAR FSRKAEEKIK+VGGACIL+A
Sbjct:    1 MSTNKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINFDKYXXXYFGKVGMRNFHVHAHTINQYCPSVNLDKLWSLVSEQTREKYAKDKKKAPVIDVTKAGYFKVLGKGLLPNQPVIVKARLFSRKAEEKIKSVGGACILSA 149          
BLAST of mRNA_Ecto-sp8_S_contig92160.30598.1 vs. uniprot
Match: A0A0X7YHM3_PANFL (60S ribosomal protein L27a n=3 Tax=Odonata TaxID=6961 RepID=A0A0X7YHM3_PANFL)

HSP 1 Score: 236 bits (603), Expect = 5.750e-78
Identity = 117/149 (78.52%), Postives = 127/149 (85.23%), Query Frame = 1
Query:    1 MASGLKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANNANLYQPGINLDKLWSLVSEQTRTKYAGQTAKAPVIDCSRAGYFKVLGKGALPKQPVIVKARFFSRKAEEKIKAVGGACILTA 447
            M++  KKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGG HHHRINFDKYHPGYFGKVGMRNFH+  N   L+ P INLDKLW+LVSEQTR KY     KAPVID  +AGY+KVLGKG LPKQPVIV+A+FFSR AEEKIKAVGG C+L A
Sbjct:    1 MSTHKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLRKNK--LWCPSINLDKLWTLVSEQTRLKYKENKEKAPVIDVVKAGYYKVLGKGRLPKQPVIVRAKFFSRSAEEKIKAVGGCCVLQA 147          
BLAST of mRNA_Ecto-sp8_S_contig92160.30598.1 vs. uniprot
Match: A0A1I7SGD1_BURXY (60S ribosomal protein L27a n=3 Tax=cellular organisms TaxID=131567 RepID=A0A1I7SGD1_BURXY)

HSP 1 Score: 231 bits (589), Expect = 7.820e-76
Identity = 111/149 (74.50%), Postives = 126/149 (84.56%), Query Frame = 1
Query:    1 MASGLKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANNANLYQPGINLDKLWSLVSEQTRTKYAGQTAKAPVIDCSRAGYFKVLGKGALPKQPVIVKARFFSRKAEEKIKAVGGACILTA 447
            M +  +KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG HHHRINFDKYHPGYFGKVGMRNFH+H N+   + P +N++KLWSLVS++TR KYA  T KAPVID +RAGYFKVLGKG LPK P+IVKA+ FS +AE KIK  GGACIL A
Sbjct:    1 MTTSKRKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLHKNH--YFNPAVNVEKLWSLVSDETREKYAKDTKKAPVIDATRAGYFKVLGKGRLPKIPLIVKAKEFSHEAERKIKKAGGACILVA 147          
BLAST of mRNA_Ecto-sp8_S_contig92160.30598.1 vs. uniprot
Match: A0A4D5RA16_SCOVI (60S ribosomal protein L27a n=2 Tax=Scolopendridae TaxID=41363 RepID=A0A4D5RA16_SCOVI)

HSP 1 Score: 229 bits (585), Expect = 3.290e-75
Identity = 114/150 (76.00%), Postives = 127/150 (84.67%), Query Frame = 1
Query:    1 MASGLKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANNANLYQPGINLDKLWSLVSEQTRTKYAGQTA-KAPVIDCSRAGYFKVLGKGALPKQPVIVKARFFSRKAEEKIKAVGGACILTA 447
            M++  KKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGG HHHRINFDKYHPGYFGKVGMRNFH+  N+   ++P +NLD+LWSLV+EQTR KY      KAPVID  RAGY KVLGKG LPKQPVIVKA+ FSR+AEEKIK+VGG C+L A
Sbjct:    1 MSTHKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLRKNH--YWRPAVNLDRLWSLVTEQTRLKYKDHPENKAPVIDVVRAGYHKVLGKGVLPKQPVIVKAKLFSRRAEEKIKSVGGCCVLVA 148          
BLAST of mRNA_Ecto-sp8_S_contig92160.30598.1 vs. uniprot
Match: UPI0019398CB0 (60S ribosomal protein L27a-like isoform X1 n=1 Tax=Styela clava TaxID=7725 RepID=UPI0019398CB0)

HSP 1 Score: 229 bits (583), Expect = 6.420e-75
Identity = 113/149 (75.84%), Postives = 125/149 (83.89%), Query Frame = 1
Query:    1 MASGLKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANNANLYQPGINLDKLWSLVSEQTRTKYAGQTAKAPVIDCSRAGYFKVLGKGALPKQPVIVKARFFSRKAEEKIKAVGGACILTA 447
            M S  KKTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGQHHHRIN+DK+HPGYFGKVGMR ++++ N    Y P +NLD+LWSLVSEQTR  Y  +   APVID  RAGYFKVLGKG LPKQPVIVKARFFSR+AEEKIK VGG C+L A
Sbjct:    1 MVSRFKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGQHHHRINYDKFHPGYFGKVGMRVYNMNRNKQ--YCPTVNLDRLWSLVSEQTRLNYKDKKDVAPVIDVVRAGYFKVLGKGVLPKQPVIVKARFFSRRAEEKIKKVGGTCVLVA 147          
BLAST of mRNA_Ecto-sp8_S_contig92160.30598.1 vs. uniprot
Match: A0A0N8D5P7_9CRUS (60S ribosomal protein L27a n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0N8D5P7_9CRUS)

HSP 1 Score: 233 bits (593), Expect = 8.110e-75
Identity = 115/144 (79.86%), Postives = 123/144 (85.42%), Query Frame = 1
Query:   19 KTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANNANLYQPGINLDKLWSLVSEQTRTKYAGQTAK-APVIDCSRAGYFKVLGKGALPKQPVIVKARFFSRKAEEKIKAVGGACILTA 447
            KTRKLRGHVSHGHGRIGKHRKHPGGRGNAGG HHHRINFDKYHPGYFGKVGMRNFH+  N  ++  P INLDKLW+LVSEQT  KY     K  P+IDC RAGYFKVLGKG LPKQP+IVKA+FFSR AE KIK+VGGACILTA
Sbjct:  120 KTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHIRKNQHHM--PAINLDKLWTLVSEQTMEKYKNHPEKKVPIIDCVRAGYFKVLGKGTLPKQPMIVKAKFFSRNAETKIKSVGGACILTA 261          
BLAST of mRNA_Ecto-sp8_S_contig92160.30598.1 vs. uniprot
Match: A0A0P5WJJ5_9CRUS (60S ribosomal protein L27a n=3 Tax=Daphnia TaxID=6668 RepID=A0A0P5WJJ5_9CRUS)

HSP 1 Score: 228 bits (581), Expect = 1.130e-74
Identity = 113/144 (78.47%), Postives = 121/144 (84.03%), Query Frame = 1
Query:   19 KTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANNANLYQPGINLDKLWSLVSEQTRTKYAGQTAK-APVIDCSRAGYFKVLGKGALPKQPVIVKARFFSRKAEEKIKAVGGACILTA 447
            KTRKLRGHVSHGHGRIGKHRKHPGGRGN  G HHHRINFDKYHPGYFGKVGMRNFH+  N  ++  P INLDKLW+LVSEQT  KY     K  P+IDC RAGYFKVLGKG LPKQP+IVKA+FFSR AE KIK+VGGACILTA
Sbjct:    2 KTRKLRGHVSHGHGRIGKHRKHPGGRGNEDGMHHHRINFDKYHPGYFGKVGMRNFHIRKNQHHM--PAINLDKLWTLVSEQTMEKYKNHPEKKVPIIDCVRAGYFKVLGKGTLPKQPMIVKAKFFSRNAETKIKSVGGACILTA 143          
BLAST of mRNA_Ecto-sp8_S_contig92160.30598.1 vs. uniprot
Match: A0A8J2H3U9_COTCN (60S ribosomal protein L27a n=1 Tax=Cotesia congregata TaxID=51543 RepID=A0A8J2H3U9_COTCN)

HSP 1 Score: 228 bits (581), Expect = 1.580e-74
Identity = 112/149 (75.17%), Postives = 129/149 (86.58%), Query Frame = 1
Query:    4 ASGLKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRNFHVHANNANLYQPGINLDKLWSLVSEQTRTKYAGQT-AKAPVIDCSRAGYFKVLGKGALPKQPVIVKARFFSRKAEEKIKAVGGACILTA 447
            A+  KKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGG HHHRINFDKYHPGYFGK+GMRN+HV  N+   + P +NLDKLW+LVSEQTR +Y   T  K PVID S+AGY+K+LGKG LP QPVIVKA+FFS+KAE+KIKA+GGAC+L+A
Sbjct:    7 ATHKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKLGMRNYHVRKNST--WCPTLNLDKLWTLVSEQTRLRYKDNTNGKVPVIDLSKAGYYKLLGKGRLPDQPVIVKAKFFSKKAEDKIKAIGGACVLSA 153          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig92160.30598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0U2V6K7_9MAXI3.590e-8483.3360S ribosomal protein L27a n=5 Tax=Calanoida TaxID... [more]
A0A0U2IG41_ACAPC8.450e-8381.8860S ribosomal protein L27a n=2 Tax=Acartia pacific... [more]
C1BT74_LEPSM3.320e-8281.8860S ribosomal protein L27a n=2 Tax=Caligidae TaxID... [more]
A0A0X7YHM3_PANFL5.750e-7878.5260S ribosomal protein L27a n=3 Tax=Odonata TaxID=6... [more]
A0A1I7SGD1_BURXY7.820e-7674.5060S ribosomal protein L27a n=3 Tax=cellular organi... [more]
A0A4D5RA16_SCOVI3.290e-7576.0060S ribosomal protein L27a n=2 Tax=Scolopendridae ... [more]
UPI0019398CB06.420e-7575.8460S ribosomal protein L27a-like isoform X1 n=1 Tax... [more]
A0A0N8D5P7_9CRUS8.110e-7579.8660S ribosomal protein L27a n=1 Tax=Daphnia magna T... [more]
A0A0P5WJJ5_9CRUS1.130e-7478.4760S ribosomal protein L27a n=3 Tax=Daphnia TaxID=6... [more]
A0A8J2H3U9_COTCN1.580e-7475.1760S ribosomal protein L27a n=1 Tax=Cotesia congreg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig92160contigEcto-sp8_S_contig92160:70..522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeArthropoda
Stop1
Start1
Seed ortholog score236.1
Seed ortholog evalue1.1e-59
Seed eggNOG ortholog6669.EFX76935
Preferred nameRpL27A
Model size453
KEGG koko:K02900
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
EggNOG free text desc.Belongs to the universal ribosomal protein uL15 family
EggNOG OGs3A1NK@33154,3BHMY@33208,3D0IR@33213,41YZJ@6656,COG0200@1,KOG1742@2759
Cds size453
COG Functional cat.J
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145273.9168599-CDS-Ecto-sp8_S_contig92160:69..5221681145273.9168599-CDS-Ecto-sp8_S_contig92160:69..522Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig92160 70..522 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig92160.30598.1prot_Ecto-sp8_S_contig92160.30598.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig92160 70..522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig92160.30598.1

>prot_Ecto-sp8_S_contig92160.30598.1 ID=prot_Ecto-sp8_S_contig92160.30598.1|Name=mRNA_Ecto-sp8_S_contig92160.30598.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=151bp
MASGLKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINFDKYHP
GYFGKVGMRNFHVHANNANLYQPGINLDKLWSLVSEQTRTKYAGQTAKAP
VIDCSRAGYFKVLGKGALPKQPVIVKARFFSRKAEEKIKAVGGACILTAQ
*
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mRNA from alignment at Ecto-sp8_S_contig92160:70..522-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig92160.30598.1 ID=mRNA_Ecto-sp8_S_contig92160.30598.1|Name=mRNA_Ecto-sp8_S_contig92160.30598.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=453bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92160:70..522- (Ectocarpus species8 EcLAC_412)
ATGGCTTCCGGACTGAAGAAGACCCGCAAGTTGAGAGGACACGTCTCTCA CGGTCATGGTAGGATCGGAAAGCACAGGAAACATCCCGGAGGTCGCGGAA ACGCTGGTGGCCAACATCACCACAGGATCAACTTCGACAAGTACCATCCC GGATACTTCGGTAAGGTCGGTATGAGGAACTTCCACGTCCACGCCAACAA CGCCAACCTCTACCAGCCCGGCATCAACCTGGACAAGCTGTGGTCCCTCG TCTCAGAGCAGACCAGGACCAAGTACGCCGGACAGACAGCCAAGGCCCCA GTCATTGACTGCTCCAGGGCTGGCTACTTCAAGGTTCTTGGCAAGGGTGC CCTCCCCAAGCAGCCAGTCATCGTGAAGGCTCGCTTCTTCTCCCGCAAGG CTGAAGAGAAGATCAAGGCTGTCGGAGGAGCTTGCATTCTCACCGCCCAG TAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig92160:70..522-

>mRNA_Ecto-sp8_S_contig92160.30598.1 ID=mRNA_Ecto-sp8_S_contig92160.30598.1|Name=mRNA_Ecto-sp8_S_contig92160.30598.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=453bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92160:70..522- (Ectocarpus species8 EcLAC_412)
ATGGCTTCCGGACTGAAGAAGACCCGCAAGTTGAGAGGACACGTCTCTCA
CGGTCATGGTAGGATCGGAAAGCACAGGAAACATCCCGGAGGTCGCGGAA
ACGCTGGTGGCCAACATCACCACAGGATCAACTTCGACAAGTACCATCCC
GGATACTTCGGTAAGGTCGGTATGAGGAACTTCCACGTCCACGCCAACAA
CGCCAACCTCTACCAGCCCGGCATCAACCTGGACAAGCTGTGGTCCCTCG
TCTCAGAGCAGACCAGGACCAAGTACGCCGGACAGACAGCCAAGGCCCCA
GTCATTGACTGCTCCAGGGCTGGCTACTTCAAGGTTCTTGGCAAGGGTGC
CCTCCCCAAGCAGCCAGTCATCGTGAAGGCTCGCTTCTTCTCCCGCAAGG
CTGAAGAGAAGATCAAGGCTGTCGGAGGAGCTTGCATTCTCACCGCCCAG
TAA
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