mRNA_Ecto-sp8_S_contig92046.30574.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig92046.30574.1
Unique NamemRNA_Ecto-sp8_S_contig92046.30574.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig92046.30574.1 vs. uniprot
Match: D7G5B1_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B1_ECTSI)

HSP 1 Score: 290 bits (742), Expect = 2.770e-90
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 1
Query:    1 AVSHNKKWVVTADAGQDSMLVVWDTASGIPIKSIFNPHPKGVIAMDISPDALFIVTLSAPAPTESENDSPQTISIWEWTHPEREEALFTSVIDEPDVQKVVKFNSSDIRHIVTTGDRKTMFWGWEDGGLRGYIPRMSRHD 420
            AVSHNKKWVVTADAGQDSMLVVWDTASGIPIKSIFNPHPKGVIAMDISPDALFIVTLSAPAP ESENDSPQTISIWEWTHPEREEALFTSVIDEPDVQKVVKFNSSDIRHIVTTGDRKTMFWGWEDGGLRGYIPRMSRHD
Sbjct:   74 AVSHNKKWVVTADAGQDSMLVVWDTASGIPIKSIFNPHPKGVIAMDISPDALFIVTLSAPAPAESENDSPQTISIWEWTHPEREEALFTSVIDEPDVQKVVKFNSSDIRHIVTTGDRKTMFWGWEDGGLRGYIPRMSRHD 213          
BLAST of mRNA_Ecto-sp8_S_contig92046.30574.1 vs. uniprot
Match: A0A7S1CHH4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CHH4_9STRA)

HSP 1 Score: 149 bits (375), Expect = 4.950e-43
Identity = 66/139 (47.48%), Postives = 97/139 (69.78%), Query Frame = 1
Query:    4 VSHNKKWVVTADAGQDSMLVVWDTASGIPIKSIFNPHPKGVIAMDISPDALFIVTLSAPAPTESENDSPQTISIWEWTHPEREEALFTSVIDEPDVQKVVKFNSSDIRHIVTTGDRKTMFWGWEDGGLRGYIPRMSRHD 420
            VS  ++W+ TAD+G DSM+VVWD+ +G PIK+IFNPHP GV+AMD+SPDA+F+VTLS     E+++   Q I++WEWT  ER+  L+T+ +   D Q  V+FN +DIR I + G+++ +FW W     + Y P +S+ D
Sbjct:    1 VSEARRWIATADSGPDSMIVVWDSTTGTPIKTIFNPHPNGVVAMDMSPDAMFLVTLSK---VEADSGEEQAIALWEWTV-ERDGPLYTAAVPAADTQTTVRFNPADIREIASNGEQRVIFWNWHSRAFKFYSPPLSQRD 135          
BLAST of mRNA_Ecto-sp8_S_contig92046.30574.1 vs. uniprot
Match: A0A6G0XN73_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XN73_9STRA)

HSP 1 Score: 149 bits (376), Expect = 4.980e-39
Identity = 72/140 (51.43%), Postives = 96/140 (68.57%), Query Frame = 1
Query:    1 AVSHNKKWVVTADAGQDSMLVVWDTASGIPIKSIFNPHPKGVIAMDISPDALFIVTLSAPAPTESENDSPQTISIWEWTHPEREEALFTSVIDEPDVQKVVKFNSSDIRHIVTTGDRKTMFWGWEDGGLRGYIPRMSRHD 420
            AVS +K+W+VTAD GQDSMLVVWD  +  PIK+IFNPH  GV  +DISPDA+FIVTLS       +++  Q I +WEWT   REEAL+++ +   DVQ  V+FN+ DIR +VT G ++ +FW W    L+ Y P +S+ D
Sbjct:   70 AVSEDKRWIVTADRGQDSMLVVWDATTANPIKTIFNPHLDGVQCVDISPDAMFIVTLSVGRAKNDKSEQAQEIKLWEWTVA-REEALYSAAVATEDVQTCVRFNTYDIRELVTNGPQRVIFWNWAHHQLQFYSPPLSQKD 208          
BLAST of mRNA_Ecto-sp8_S_contig92046.30574.1 vs. uniprot
Match: A0A418AVL0_9STRA (C2 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AVL0_9STRA)

HSP 1 Score: 146 bits (368), Expect = 6.180e-38
Identity = 69/139 (49.64%), Postives = 94/139 (67.63%), Query Frame = 1
Query:    4 VSHNKKWVVTADAGQDSMLVVWDTASGIPIKSIFNPHPKGVIAMDISPDALFIVTLSAPAPTESENDSPQTISIWEWTHPEREEALFTSVIDEPDVQKVVKFNSSDIRHIVTTGDRKTMFWGWEDGGLRGYIPRMSRHD 420
            VS +K+W+VTAD GQDSMLVVWD  +G PIK+IFNPH  GV  +D+SPDA+FIVTLS      +  +  Q I +WEWT   R++AL+ + +   DVQ  V+FN+ DIR I+T G ++ +FW W    L+ Y P +S+ D
Sbjct:  192 VSEDKRWIVTADKGQDSMLVVWDATTGNPIKTIFNPHVDGVQCLDLSPDAMFIVTLSIATDKSNRKEHAQEIKLWEWTVA-RDDALYVAAVTTEDVQTCVRFNTYDIREIMTNGAQRVIFWNWAAHQLQFYSPPLSQKD 329          
BLAST of mRNA_Ecto-sp8_S_contig92046.30574.1 vs. uniprot
Match: A0A1V9YSX3_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YSX3_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.120e-37
Identity = 71/140 (50.71%), Postives = 99/140 (70.71%), Query Frame = 1
Query:    1 AVSHNKKWVVTADAGQDSMLVVWDTASGIPIKSIFNPHPKGVIAMDISPDALFIVTLSAPAPTESENDSPQTISIWEWTHPEREEALFTSVIDEPDVQKVVKFNSSDIRHIVTTGDRKTMFWGWEDGGLRGYIPRMSRHD 420
            AVS +K+W+VTAD G+DSMLVVWD+ +G PIK+IF+PH +GV  +DISPDA+FIVTLS P   E++    Q I +WEWT   R++A++ + +   DVQ  V+FN+ DIR IVT G ++ +FW W    L+ Y P +S+ D
Sbjct:   66 AVSEDKRWIVTADRGKDSMLVVWDSTTGNPIKTIFSPHAEGVQCLDISPDAMFIVTLSIPTSKETK----QEIKLWEWTVA-RDDAMYIAAVTTEDVQTCVRFNTYDIREIVTNGAQRVIFWNWIHHQLQFYSPPLSQID 200          
BLAST of mRNA_Ecto-sp8_S_contig92046.30574.1 vs. uniprot
Match: A0A485LPA6_9STRA (Aste57867_23417 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LPA6_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.120e-37
Identity = 72/141 (51.06%), Postives = 97/141 (68.79%), Query Frame = 1
Query:    1 AVSHNKKWVVTADAGQDSMLVVWDTASGIPIKSIFNPHPKGVIAMDISPDALFIVTLS-APAPTESENDSPQTISIWEWTHPEREEALFTSVIDEPDVQKVVKFNSSDIRHIVTTGDRKTMFWGWEDGGLRGYIPRMSRHD 420
            AVS +K+W+VTAD GQDSMLVVWD  +G PIK+IFNPH  GV  +D+SPDA+FIVTLS A A  +   +  Q I +WEWT   RE+AL+ + +   DVQ  V+FN+ DIR ++T G ++ +FW W    L+ Y P +S+ D
Sbjct:   68 AVSEDKRWIVTADRGQDSMLVVWDANTGNPIKTIFNPHADGVQCLDMSPDAMFIVTLSIANAKQDDAPEHAQEIKLWEWTVA-REDALYAAAVTTEDVQTCVRFNTYDIRELMTNGAQRVIFWNWTHHTLQFYSPPLSQKD 207          
BLAST of mRNA_Ecto-sp8_S_contig92046.30574.1 vs. uniprot
Match: W4H2Q6_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H2Q6_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.530e-37
Identity = 68/140 (48.57%), Postives = 95/140 (67.86%), Query Frame = 1
Query:    1 AVSHNKKWVVTADAGQDSMLVVWDTASGIPIKSIFNPHPKGVIAMDISPDALFIVTLSAPAPTESENDSPQTISIWEWTHPEREEALFTSVIDEPDVQKVVKFNSSDIRHIVTTGDRKTMFWGWEDGGLRGYIPRMSRHD 420
            AVS +K+W+VTAD GQDSMLVVWD  +G PIK+IFNPH  GV  +D+SPDA+FIVTLS      +  +  Q I +WEWT   R++AL+ + +   DVQ  V+FN+ D+R ++T G ++ +FW W    L+ Y P +S+ D
Sbjct:   71 AVSEDKRWIVTADRGQDSMLVVWDATTGNPIKTIFNPHSDGVQCLDMSPDAMFIVTLSIAMDKANVKEHAQEIKLWEWTVA-RDDALYVAAVTTEDVQTCVRFNTYDVRELMTNGAQRVIFWNWAAHQLQFYSPPLSQKD 209          
BLAST of mRNA_Ecto-sp8_S_contig92046.30574.1 vs. uniprot
Match: A0A397D0A3_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397D0A3_9STRA)

HSP 1 Score: 144 bits (364), Expect = 2.060e-37
Identity = 68/140 (48.57%), Postives = 95/140 (67.86%), Query Frame = 1
Query:    1 AVSHNKKWVVTADAGQDSMLVVWDTASGIPIKSIFNPHPKGVIAMDISPDALFIVTLSAPAPTESENDSPQTISIWEWTHPEREEALFTSVIDEPDVQKVVKFNSSDIRHIVTTGDRKTMFWGWEDGGLRGYIPRMSRHD 420
            AVS +K+W+VTAD GQDSMLVVWD  +G PIK+IFNPH  GV  +D+SPDA+FIVTLS      +  +  Q I +WEWT   R++AL+ + +   DVQ  V+FN+ D+R ++T G ++ +FW W    L+ Y P +S+ D
Sbjct:   71 AVSEDKRWIVTADRGQDSMLVVWDATTGNPIKTIFNPHSDGVQCLDMSPDAMFIVTLSIAMDKANLKEHAQEIKLWEWTVA-RDDALYVAAVTTEDVQTCVRFNTYDVRELMTNGAQRVIFWNWAAHQLQFYSPPLSQKD 209          
BLAST of mRNA_Ecto-sp8_S_contig92046.30574.1 vs. uniprot
Match: A0A8K1C420_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C420_PYTOL)

HSP 1 Score: 142 bits (357), Expect = 1.870e-36
Identity = 72/152 (47.37%), Postives = 96/152 (63.16%), Query Frame = 1
Query:    4 VSHNKKWVVTADAGQDSMLVVWDTASGIPIKSIFNPHPKGVIAMDISPDALFIVTLSAPAPTESENDSP------------QTISIWEWTHPER-EEALFTSVIDEPDVQKVVKFNSSDIRHIVTTGDRKTMFWGWEDGGLRGYIPRMSRHD 420
            VS +K+W+VTAD G +SM+VVWD  +G PIK+IF PHP GV A+DISPDALF VTLSA  P E+ N S             Q +S+WEWT       AL++S +   D+Q  V+FN+ DIR IV+ G ++ +FW W +  L  Y P +S+ D
Sbjct:   91 VSEDKRWIVTADRGHESMIVVWDALTGNPIKTIFQPHPYGVQAIDISPDALFFVTLSATNPNETSNGSKSPSKNSKKMRFRQELSVWEWTSAATGNTALYSSFVATEDLQHAVRFNTYDIREIVSNGKQRVIFWNWAEQRLLFYSPSLSQKD 242          
BLAST of mRNA_Ecto-sp8_S_contig92046.30574.1 vs. uniprot
Match: A0A1V9ZR22_9STRA (C2 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZR22_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.890e-36
Identity = 70/140 (50.00%), Postives = 94/140 (67.14%), Query Frame = 1
Query:    1 AVSHNKKWVVTADAGQDSMLVVWDTASGIPIKSIFNPHPKGVIAMDISPDALFIVTLSAPAPTESENDSPQTISIWEWTHPEREEALFTSVIDEPDVQKVVKFNSSDIRHIVTTGDRKTMFWGWEDGGLRGYIPRMSRHD 420
            AVS +K+W+VTAD G DSMLVVWD  +G PIK+IF+PH +GV  +DISPDA+FI TLS P  T  E      I +WEWT   R++AL+ + +   D+Q  V+FN+ DIR IVT G ++ +FW W    L+ Y P +S+ D
Sbjct:  273 AVSEDKRWIVTADRGTDSMLVVWDATTGNPIKTIFSPHVRGVQCLDISPDAMFIATLSIPDGTAQE------IKLWEWTVA-RDDALYAAAVTTEDIQTCVRFNTYDIREIVTNGAQRVIFWNWIHHQLQFYSPPLSQKD 405          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig92046.30574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5B1_ECTSI2.770e-9099.29Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
A0A7S1CHH4_9STRA4.950e-4347.48Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A6G0XN73_9STRA4.980e-3951.43Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A418AVL0_9STRA6.180e-3849.64C2 domain-containing protein n=2 Tax=Aphanomyces i... [more]
A0A1V9YSX3_9STRA1.120e-3750.71Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A485LPA6_9STRA1.120e-3751.06Aste57867_23417 protein n=1 Tax=Aphanomyces stella... [more]
W4H2Q6_9STRA1.530e-3748.57Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A397D0A3_9STRA2.060e-3748.57Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A8K1C420_PYTOL1.870e-3647.37Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9ZR22_9STRA1.890e-3650.00C2 domain-containing protein n=1 Tax=Achlya hypogy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig92046contigEcto-sp8_S_contig92046:3..614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score293.9
Seed ortholog evalue4e-77
Seed eggNOG ortholog2880.D7G5B1
Preferred nameWDR66
Model size420
Hectar predicted targeting categoryother localisation
GOsGO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0030030,GO:0031514,GO:0032838,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120036,GO:0120038
Exons2
EggNOG free text desc.cilium movement
EggNOG OGs2CCTB@1,2QQ05@2759
Cds size420
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145272.1028795-CDS-Ecto-sp8_S_contig92046:2..1251681145272.1028795-CDS-Ecto-sp8_S_contig92046:2..125Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig92046 3..125 -
1681145272.1156714-CDS-Ecto-sp8_S_contig92046:317..6141681145272.1156714-CDS-Ecto-sp8_S_contig92046:317..614Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig92046 318..614 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig92046.30574.1prot_Ecto-sp8_S_contig92046.30574.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig92046 3..614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig92046.30574.1

>prot_Ecto-sp8_S_contig92046.30574.1 ID=prot_Ecto-sp8_S_contig92046.30574.1|Name=mRNA_Ecto-sp8_S_contig92046.30574.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=140bp
AVSHNKKWVVTADAGQDSMLVVWDTASGIPIKSIFNPHPKGVIAMDISPD
ALFIVTLSAPAPTESENDSPQTISIWEWTHPEREEALFTSVIDEPDVQKV
VKFNSSDIRHIVTTGDRKTMFWGWEDGGLRGYIPRMSRHD
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mRNA from alignment at Ecto-sp8_S_contig92046:3..614-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig92046.30574.1 ID=mRNA_Ecto-sp8_S_contig92046.30574.1|Name=mRNA_Ecto-sp8_S_contig92046.30574.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=612bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92046:3..614- (Ectocarpus species8 EcLAC_412)
GCAGTCAGTCATAACAAGAAATGGGTGGTAACAGCCGATGCTGGACAGGA CAGCATGCTTGTCGTATGGGACACGGCTTCCGGTATTCCAATCAAAAGCA TTTTCAATCCGCATCCAAAAGGCGTGATCGCAATGGACATCTCGCCAGAC GCCCTGTTCATCGTAACCTTGAGTGCTCCAGCGCCAACGGAGAGCGAAAA CGACTCCCCTCAAACGATAAGCATTTGGGAATGGACTCACCCGGAGAGGG AAGAGGCTCTCTTCACCAGCGTCATCGATGAGCCGGATGTGCAGAAGGTA CAGACACAGCTGGTATGGTGCAACAGTAGTCTCTTGGGTTCAACCACAAT GTGCCTTTAAGACATTTTACAGTATTATTATTAAATGTGGGGATCTATAC GTAGACGTGGCACCTCATCGAGGGGGTGGTTCAGCAATGGCATGTAGTGA GAAACCACTTGCCACTCGACTTCTTTCTTGTCCTGGCAGGTGGTGAAGTT CAACAGTTCTGACATTCGGCACATTGTAACGACGGGTGACCGCAAGACTA TGTTCTGGGGCTGGGAAGACGGCGGTCTGAGAGGCTACATTCCTCGGATG TCACGCCATGAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig92046:3..614-

>mRNA_Ecto-sp8_S_contig92046.30574.1 ID=mRNA_Ecto-sp8_S_contig92046.30574.1|Name=mRNA_Ecto-sp8_S_contig92046.30574.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92046:3..614- (Ectocarpus species8 EcLAC_412)
GCAGTCAGTCATAACAAGAAATGGGTGGTAACAGCCGATGCTGGACAGGA
CAGCATGCTTGTCGTATGGGACACGGCTTCCGGTATTCCAATCAAAAGCA
TTTTCAATCCGCATCCAAAAGGCGTGATCGCAATGGACATCTCGCCAGAC
GCCCTGTTCATCGTAACCTTGAGTGCTCCAGCGCCAACGGAGAGCGAAAA
CGACTCCCCTCAAACGATAAGCATTTGGGAATGGACTCACCCGGAGAGGG
AAGAGGCTCTCTTCACCAGCGTCATCGATGAGCCGGATGTGCAGAAGGTG
GTGAAGTTCAACAGTTCTGACATTCGGCACATTGTAACGACGGGTGACCG
CAAGACTATGTTCTGGGGCTGGGAAGACGGCGGTCTGAGAGGCTACATTC
CTCGGATGTCACGCCATGAC
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