mRNA_Ecto-sp8_S_contig91912.30547.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig91912.30547.1
Unique NamemRNA_Ecto-sp8_S_contig91912.30547.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig91912.30547.1 vs. uniprot
Match: UPI000C7879C4 (uncharacterized protein LOC111704149 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C7879C4)

HSP 1 Score: 174 bits (440), Expect = 3.570e-52
Identity = 86/173 (49.71%), Postives = 115/173 (66.47%), Query Frame = 1 
Query:    1 MDIKTKDEFIFFMQRACEDTCNDCYIELYNILLRAFISADCDFDGQVSEDEFEGMIAAANEFPKKFGFEWW-AGSGKDQ----------FRAIDENGDE--RTEFVKSCKDSANTGSDSYKKIYWFSWKCFQAADADRDGQVSGSEFATMINVATSGQKRLGLPAPFQTSADQ 480
            MD+  KD+F FFM+RA   + +DCYIELYN+LLR+F++AD DFDG+VS DEF+ MI AA    +KFG++WW      D+          F  IDEN D   R + +  CK      +  Y+++YWF W+CFQAADADRDG VSG EF  MI++ATS QKRLG+  PFQ++ ++
Sbjct:    1 MDLANKDDFTFFMRRALTSSDDDCYIELYNLLLRSFVAADVDFDGKVSVDEFDSMIEAAAALLRKFGYQWWDEAKCPDEATRKTVRAALFTKIDENNDGVMRRKRICVCKKCTEPNTPEYRRLYWFHWQCFQAADADRDGMVSGDEFNKMIDMATSAQKRLGMETPFQSTEER 173
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig91912.30547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI000C7879C43.570e-5249.71uncharacterized protein LOC111704149 n=1 Tax=Euryt... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig91912contigEcto-sp8_S_contig91912:53..616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size480
Hectar predicted targeting categoryother localisation
Exons2
Cds size480
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145270.4070804-CDS-Ecto-sp8_S_contig91912:52..3141681145270.4070804-CDS-Ecto-sp8_S_contig91912:52..314Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig91912 53..314 +
1681145270.4178412-CDS-Ecto-sp8_S_contig91912:398..6161681145270.4178412-CDS-Ecto-sp8_S_contig91912:398..616Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig91912 399..616 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig91912.30547.1prot_Ecto-sp8_S_contig91912.30547.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig91912 53..616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig91912.30547.1

>prot_Ecto-sp8_S_contig91912.30547.1 ID=prot_Ecto-sp8_S_contig91912.30547.1|Name=mRNA_Ecto-sp8_S_contig91912.30547.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=160bp
MDIKTKDEFIFFMQRACEDTCNDCYIELYNILLRAFISADCDFDGQVSED
EFEGMIAAANEFPKKFGFEWWAGSGKDQFRAIDENGDERTEFVKSCKDSA
NTGSDSYKKIYWFSWKCFQAADADRDGQVSGSEFATMINVATSGQKRLGL
PAPFQTSADQ
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mRNA from alignment at Ecto-sp8_S_contig91912:53..616+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig91912.30547.1 ID=mRNA_Ecto-sp8_S_contig91912.30547.1|Name=mRNA_Ecto-sp8_S_contig91912.30547.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=564bp|location=Sequence derived from alignment at Ecto-sp8_S_contig91912:53..616+ (Ectocarpus species8 EcLAC_412)
ATGGATATCAAAACTAAGGATGAGTTCATCTTCTTCATGCAGCGTGCCTG
CGAGGACACTTGCAATGATTGCTATATTGAGCTCTACAACATCCTCCTCA
GGGCCTTCATTTCTGCTGATTGTGACTTTGATGGACAAGTCTCTGAGGAT
GAGTTTGAGGGAATGATTGCCGCTGCCAACGAGTTCCCCAAGAAGTTTGG
TTTTGAGTGGTGGGCTGGAAGTGGCAAGGACCAGTTCAGAGCTATTGATG
AGAATGGTGATGGTGGCATCTCCTTCGATGAATGGCTTAACTTTGCCTAC
ACCCATTACCAGAGCCAAAAGCTTCCTGTCGCCTTTGACAAGGAAGAAAG
GACTGAGTTTGTGAAGTCCTGCAAGGATTCCGCCAACACTGGATCCGATT
CTTACAAGAAGATCTACTGGTTCAGCTGGAAGTGTTTCCAGGCCGCTGAT
GCCGACAGAGATGGACAGGTCTCTGGCTCTGAGTTTGCAACCATGATCAA
TGTGGCTACATCTGGACAGAAAAGGCTTGGACTCCCCGCTCCATTCCAGA
CTTCTGCAGACCAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig91912:53..616+

>mRNA_Ecto-sp8_S_contig91912.30547.1 ID=mRNA_Ecto-sp8_S_contig91912.30547.1|Name=mRNA_Ecto-sp8_S_contig91912.30547.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp8_S_contig91912:53..616+ (Ectocarpus species8 EcLAC_412)
ATGGATATCAAAACTAAGGATGAGTTCATCTTCTTCATGCAGCGTGCCTG
CGAGGACACTTGCAATGATTGCTATATTGAGCTCTACAACATCCTCCTCA
GGGCCTTCATTTCTGCTGATTGTGACTTTGATGGACAAGTCTCTGAGGAT
GAGTTTGAGGGAATGATTGCCGCTGCCAACGAGTTCCCCAAGAAGTTTGG
TTTTGAGTGGTGGGCTGGAAGTGGCAAGGACCAGTTCAGAGCTATTGATG
AGAATGGTGATGAAAGGACTGAGTTTGTGAAGTCCTGCAAGGATTCCGCC
AACACTGGATCCGATTCTTACAAGAAGATCTACTGGTTCAGCTGGAAGTG
TTTCCAGGCCGCTGATGCCGACAGAGATGGACAGGTCTCTGGCTCTGAGT
TTGCAACCATGATCAATGTGGCTACATCTGGACAGAAAAGGCTTGGACTC
CCCGCTCCATTCCAGACTTCTGCAGACCAA
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