mRNA_Ecto-sp8_S_contig9157.30495.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig9157.30495.1 vs. uniprot
Match: D7FLD8_ECTSI (Mitochondrial import inner membrane translocase TIM14 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLD8_ECTSI) HSP 1 Score: 207 bits (527), Expect = 1.050e-65 Identity = 116/139 (83.45%), Postives = 117/139 (84.17%), Query Frame = 1
Query: 1 GAGIAVSAMVARYGLMEYQKYQAAHPEATKEADSAAAGDQTADGETGKASPEGAAKGAGASAGGFFGAFGKRHYDGGFEEKMTRKEAALILGVRESATAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEILLKGRK 417
GAGIAVSAMVARYGLMEYQKYQAAHPE T+EADS AAGDQT AGGFFGAFGKRHYDGGFEEKMTRKEAALILGVRESATAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEILLKGRK
Sbjct: 71 GAGIAVSAMVARYGLMEYQKYQAAHPEITEEADSGAAGDQTXXXXXXXXXXXXXXXXXXXXAGGFFGAFGKRHYDGGFEEKMTRKEAALILGVRESATAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEILLKGRK 209
BLAST of mRNA_Ecto-sp8_S_contig9157.30495.1 vs. uniprot
Match: K8Z3F4_NANGC (Chaperone-domain containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z3F4_NANGC) HSP 1 Score: 117 bits (292), Expect = 6.630e-30 Identity = 55/70 (78.57%), Postives = 65/70 (92.86%), Query Frame = 1
Query: 205 FGKRHYDGGFEEKMTRKEAALILGVRESATAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEILLKGR 414
F KR Y+GGFE+KMTR+EAALILGVRESA+ QRIK++HRRILM+NHPD GGS Y+A+KINEAKE+LLKGR
Sbjct: 160 FAKRFYEGGFEDKMTRREAALILGVRESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKGR 229
BLAST of mRNA_Ecto-sp8_S_contig9157.30495.1 vs. uniprot
Match: A0A7S2JUU2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JUU2_9STRA) HSP 1 Score: 116 bits (290), Expect = 1.530e-29 Identity = 72/142 (50.70%), Postives = 91/142 (64.08%), Query Frame = 1
Query: 4 AGIAVSAMVARYGLMEYQKYQAAHP-EATKEADSAAAGDQTADGETGKASPEGAAKGAGASAGGFFGAFG----KRHYDGGFEEKMTRKEAALILGVRESATAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEILLKGR 414
A +AV A +YGL ++++Q P E K AD KAS K FF FG ++Y+GGFE+KMTR+EAALILGVRESAT +RIKD+HR+IL++NHPD GGS YMA+KINEAKE+LLKG+
Sbjct: 100 AAVAVGAKAGQYGLRAFEEWQKNQPKEEPKAADDTTXXXXXXXXXXAKASDSKKEKV------NFFDQFGFGVGSKYYEGGFEDKMTRREAALILGVRESATVKRIKDAHRKILILNHPDTGGSTYMASKINEAKELLLKGK 235
BLAST of mRNA_Ecto-sp8_S_contig9157.30495.1 vs. uniprot
Match: A0A835YPD5_9STRA (Mitochondrial import inner membrane translocase TIM14 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPD5_9STRA) HSP 1 Score: 116 bits (290), Expect = 1.640e-29 Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 1
Query: 211 KRHYDGGFEEKMTRKEAALILGVRESATAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEILLKGR 414
KR YDGGFEE MTR+EAALILGVRESA+ QRIKD+HRRILM+NHPD+GGS YMA KIN AKEILLKG+
Sbjct: 171 KRFYDGGFEETMTRREAALILGVRESASPQRIKDAHRRILMLNHPDRGGSTYMAGKINAAKEILLKGK 238
BLAST of mRNA_Ecto-sp8_S_contig9157.30495.1 vs. uniprot
Match: A0A7S2Q5G3_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q5G3_9STRA) HSP 1 Score: 114 bits (284), Expect = 2.490e-28 Identity = 52/70 (74.29%), Postives = 66/70 (94.29%), Query Frame = 1
Query: 208 GKRHYDGGFEEKMTRKEAALILGVRESATAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEILLKGRK 417
G ++Y+GGFEE+MTRKEAALILGVRES+TA+RIK++HR++L++NHPD GGS YMA KINEAKE+LLKG+K
Sbjct: 199 GAKYYEGGFEEQMTRKEAALILGVRESSTAKRIKEAHRKLLILNHPDTGGSTYMAGKINEAKELLLKGKK 268
BLAST of mRNA_Ecto-sp8_S_contig9157.30495.1 vs. uniprot
Match: A0A1V9Z1B4_9STRA (J domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1B4_9STRA) HSP 1 Score: 110 bits (275), Expect = 4.540e-28 Identity = 67/141 (47.52%), Postives = 89/141 (63.12%), Query Frame = 1
Query: 1 GAGIAVSAMVARYGLMEYQKYQAAHPEATKEADSAAAGDQTADGETGKASPEGAAKGAGASAGGFFGAFG---KRHYDGGFEEKMTRKEAALILGVRESATAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEILLKGR 414
GAG+AV+AM +Y L YQ+YQAA A E +A + AKG + G FF F + YDG FE+KMTR+EAALILGVRE+A RI+++HR++L+ NHPD GGS +++ KINEAKE+LL G+
Sbjct: 43 GAGVAVAAMSVKYLLQSYQQYQAAKAAAPAE----------------EAKGKSDAKGTSSERGSFFN-FNMSYRNFYDGPFEDKMTRREAALILGVRENANPDRIRNAHRKLLIANHPDTGGSTFLSTKINEAKEMLLNGK 166
BLAST of mRNA_Ecto-sp8_S_contig9157.30495.1 vs. uniprot
Match: A0A482S026_9ARCH (J domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S026_9ARCH) HSP 1 Score: 111 bits (277), Expect = 4.900e-28 Identity = 64/148 (43.24%), Postives = 95/148 (64.19%), Query Frame = 1
Query: 1 GAGIAVSAMVARYGLMEYQKYQAAHPEATKEADSAAAGDQTADGETG-----KASPEGAAKGAGASAGG-----FFGAFGKRHYDGGFEEKMTRKEAALILGVRESATAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEILLKGR 414
G + +A+ RY + Y+ Y+ P T + + A + +TG +A + +A+ +S+G F F + YDGGFEEKMT++EAALILGVRESA +R+K++HRR+L++NHPDKGGS ++ AKINEAK++LLKG+
Sbjct: 47 GLAVLGTAVTLRYAVAAYETYKQNQPAVTDQPPAEEANQEEVKSKTGARAEPRAEAQSSARKTTSSSGNPADSLFSSWFARNFYDGGFEEKMTKREAALILGVRESAAVERVKEAHRRMLILNHPDKGGSVFITAKINEAKDLLLKGK 194
BLAST of mRNA_Ecto-sp8_S_contig9157.30495.1 vs. uniprot
Match: A0A7S3K0B7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K0B7_9STRA) HSP 1 Score: 108 bits (271), Expect = 1.020e-27 Identity = 64/138 (46.38%), Postives = 84/138 (60.87%), Query Frame = 1
Query: 1 GAGIAVSAMVARYGLMEYQKYQAAHPEATKEADSAAAGDQTADGETGKASPEGAAKGAGASAGGFFGAFGKRHYDGGFEEKMTRKEAALILGVRESATAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEILLKGR 414
G G+A A ++ L+ Y+K+Q+ QT+ GE+ P F F +R YDG FE KMTR+EAALILGVRESA ++RIK++HRRIL INHPD GGS ++A K+NEAKE+L+KGR
Sbjct: 30 GLGVAALAFGSQQLLIAYKKWQS--------------NSQTSSGESSSGDPI------------FTNFFARRFYDGPFEAKMTRREAALILGVRESANSERIKEAHRRILRINHPDMGGSTFLAGKVNEAKELLMKGR 141
BLAST of mRNA_Ecto-sp8_S_contig9157.30495.1 vs. uniprot
Match: F0YBX3_AURAN (J domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBX3_AURAN) HSP 1 Score: 104 bits (260), Expect = 4.910e-27 Identity = 49/65 (75.38%), Postives = 59/65 (90.77%), Query Frame = 1
Query: 211 KRHYDGGFEEKMTRKEAALILGVRESATAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEILL 405
KR+Y+G FE MTR+EAALILGVRESATAQRIKD+HRRIL INHPD GGS +++AK+NEAKE+L+
Sbjct: 1 KRYYEGPFEAAMTRREAALILGVRESATAQRIKDAHRRILRINHPDMGGSAFLSAKVNEAKELLI 65
BLAST of mRNA_Ecto-sp8_S_contig9157.30495.1 vs. uniprot
Match: A0A7S3DS72_9STRA (Hypothetical protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DS72_9STRA) HSP 1 Score: 108 bits (269), Expect = 7.600e-27 Identity = 48/69 (69.57%), Postives = 62/69 (89.86%), Query Frame = 1
Query: 208 GKRHYDGGFEEKMTRKEAALILGVRESATAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEILLKGR 414
G ++Y+GGFE+ MTR+EAALILGVRES+ A RIKD+HR++L++NHPD GGS YMA KINEAKE+L+KG+
Sbjct: 126 GSKYYEGGFEDSMTRREAALILGVRESSPASRIKDAHRKLLILNHPDTGGSTYMAGKINEAKELLMKGK 194 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9157.30495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig9157.30495.1 >prot_Ecto-sp8_S_contig9157.30495.1 ID=prot_Ecto-sp8_S_contig9157.30495.1|Name=mRNA_Ecto-sp8_S_contig9157.30495.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=132bp MVARYGLMEYQKYQAAHPEATKEADSAAAGDQTADGETGKASPEGAAKGAback to top mRNA from alignment at Ecto-sp8_S_contig9157:3..2770+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig9157.30495.1 ID=mRNA_Ecto-sp8_S_contig9157.30495.1|Name=mRNA_Ecto-sp8_S_contig9157.30495.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2768bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9157:3..2770+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9157:3..2770+ >mRNA_Ecto-sp8_S_contig9157.30495.1 ID=mRNA_Ecto-sp8_S_contig9157.30495.1|Name=mRNA_Ecto-sp8_S_contig9157.30495.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9157:3..2770+ (Ectocarpus species8 EcLAC_412)back to top |