mRNA_Ecto-sp8_S_contig91561.30494.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig91561.30494.1
Unique NamemRNA_Ecto-sp8_S_contig91561.30494.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig91561.30494.1 vs. uniprot
Match: UPI001909F165 (2-isopropylmalate synthase n=1 Tax=Paracoccus caeni TaxID=657651 RepID=UPI001909F165)

HSP 1 Score: 70.1 bits (170), Expect = 1.580e-10
Identity = 30/47 (63.83%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    4 VYEGAFRDDRRHGQGNFTGTDGYRYEGEWVAGKISGQGRVTYPDGSV 144
            VYEG FR+ R+HGQG++T   GYRYEG+WV G+I GQG+ T+P+GSV
Sbjct:   35 VYEGTFRNGRQHGQGSYTLPSGYRYEGDWVDGQILGQGKATFPNGSV 81
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BLAST of mRNA_Ecto-sp8_S_contig91561.30494.1 vs. uniprot
Match: A0A1M7RUL8_9RHOB (Uncharacterized conserved protein n=2 Tax=Oceanicella actignis TaxID=1189325 RepID=A0A1M7RUL8_9RHOB)

HSP 1 Score: 66.2 bits (160), Expect = 3.240e-9
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 DVYEGAFRDDRRHGQGNFTGTDGYRYEGEWVAGKISGQGRVTYP 132
            DVYEG F+D ++HG+G FT  DG+RY GEWV G+I GQGR  YP
Sbjct:   36 DVYEGEFKDGKQHGKGAFTRPDGFRYVGEWVEGRIEGQGRAEYP 79
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BLAST of mRNA_Ecto-sp8_S_contig91561.30494.1 vs. uniprot
Match: UPI001F0B9219 (2-isopropylmalate synthase n=1 Tax=Paracoccus endophyticus TaxID=2233774 RepID=UPI001F0B9219)

HSP 1 Score: 65.9 bits (159), Expect = 4.600e-9
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    4 VYEGAFRDDRRHGQGNFTGTDGYRYEGEWVAGKISGQGRVTYP 132
            VYEG FR+ R+HG+G++    GYRYEG+W+ G+ISGQGR TYP
Sbjct:   17 VYEGTFRNGRQHGRGSYALPSGYRYEGDWIDGEISGQGRATYP 59
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BLAST of mRNA_Ecto-sp8_S_contig91561.30494.1 vs. uniprot
Match: A0A7M3T6S5_9RHOB (2-isopropylmalate synthase n=2 Tax=Pikeienuella piscinae TaxID=2748098 RepID=A0A7M3T6S5_9RHOB)

HSP 1 Score: 58.9 bits (141), Expect = 1.010e-6
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    4 VYEGAFRDDRRHGQGNFTGTDGYRYEGEWVAGKISGQGRV 123
            VYEG F+D ++HG G+FT   GY YEGEWV G+I G+GRV
Sbjct:   31 VYEGEFKDGKQHGYGSFTLPGGYEYEGEWVEGRIEGEGRV 70
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BLAST of mRNA_Ecto-sp8_S_contig91561.30494.1 vs. uniprot
Match: UPI001E358AF4 (2-isopropylmalate synthase n=1 Tax=Oceanicella sp. SM1341 TaxID=1548889 RepID=UPI001E358AF4)

HSP 1 Score: 57.8 bits (138), Expect = 2.530e-6
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    1 DVYEGAFRDDRRHGQGNFTGTDGYRYEGEWVAGKISGQGRVTYPD 135
            D+YEG FRD ++HG G +    G+ Y GEWV G+I G+G  TYP+
Sbjct:   24 DIYEGEFRDGKQHGHGTYKRPGGFEYTGEWVDGRIEGEGVATYPN 68
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BLAST of mRNA_Ecto-sp8_S_contig91561.30494.1 vs. uniprot
Match: A0A356V5N1_9RHOB (2-isopropylmalate synthase (Fragment) n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A356V5N1_9RHOB)

HSP 1 Score: 55.8 bits (133), Expect = 1.150e-5
Identity = 21/45 (46.67%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    4 VYEGAFRDDRRHGQGNFTGTDGYRYEGEWVAGKISGQGRVTYPDG 138
            +YEG F+D +RHG G++   +GY Y GEW+ G ++G GR  +P G
Sbjct:   32 IYEGTFKDGKRHGTGSYRMPNGYEYNGEWLEGAMTGAGRAVFPGG 76
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BLAST of mRNA_Ecto-sp8_S_contig91561.30494.1 vs. uniprot
Match: A0A344PIR7_9RHOB (2-isopropylmalate synthase n=1 Tax=Paracoccus suum TaxID=2259340 RepID=A0A344PIR7_9RHOB)

HSP 1 Score: 55.5 bits (132), Expect = 1.610e-5
Identity = 23/38 (60.53%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    4 VYEGAFRDDRRHGQGNFTGTDGYRYEGEWVAGKISGQG 117
            VYEG FR+  +HG+G++T   GYRYEG+W+ GKI+GQG
Sbjct:   38 VYEGTFRNGLQHGRGSYTLPSGYRYEGDWLEGKITGQG 75
[Close]
BLAST of mRNA_Ecto-sp8_S_contig91561.30494.1 vs. uniprot
Match: A0A2G6IY44_9RHOB (2-isopropylmalate synthase n=1 Tax=Rhodobacterales bacterium TaxID=1948890 RepID=A0A2G6IY44_9RHOB)

HSP 1 Score: 54.7 bits (130), Expect = 2.810e-5
Identity = 21/47 (44.68%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    4 VYEGAFRDDRRHGQGNFTGTDGYRYEGEWVAGKISGQGRVTYPDGSV 144
            +YEG F+D +RHG G++   +GY Y GEW  G+++G GR  +P G +
Sbjct:   36 LYEGTFKDGKRHGTGSYRMPNGYEYNGEWRDGEMTGAGRAVFPSGVI 82
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BLAST of mRNA_Ecto-sp8_S_contig91561.30494.1 vs. uniprot
Match: A0A4R1YLB6_9RHOB (Uncharacterized protein n=2 Tax=Rhodovulum steppense TaxID=540251 RepID=A0A4R1YLB6_9RHOB)

HSP 1 Score: 53.9 bits (128), Expect = 5.090e-5
Identity = 22/47 (46.81%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    4 VYEGAFRDDRRHGQGNFTGTDGYRYEGEWVAGKISGQGRVTYPDGSV 144
            +YEG FRD ++HG+G +   +GY Y GEW+ G+I G+G     +GSV
Sbjct:   41 IYEGTFRDGKQHGRGTYRLPNGYEYTGEWIDGRIEGEGIARLVNGSV 87
[Close]
BLAST of mRNA_Ecto-sp8_S_contig91561.30494.1 vs. uniprot
Match: A0A4R2NYC9_RHOAD (Uncharacterized protein n=1 Tax=Rhodovulum adriaticum TaxID=35804 RepID=A0A4R2NYC9_RHOAD)

HSP 1 Score: 53.5 bits (127), Expect = 6.820e-5
Identity = 22/47 (46.81%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:    4 VYEGAFRDDRRHGQGNFTGTDGYRYEGEWVAGKISGQGRVTYPDGSV 144
            +YEG F+D ++HG G +   +GY Y GEWV G+I GQG     +GS+
Sbjct:   36 IYEGTFKDGKQHGTGTYRLPNGYEYTGEWVEGRIEGQGVARLVNGSI 82
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig91561.30494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
UPI001909F1651.580e-1063.832-isopropylmalate synthase n=1 Tax=Paracoccus caen... [more]
A0A1M7RUL8_9RHOB3.240e-963.64Uncharacterized conserved protein n=2 Tax=Oceanice... [more]
UPI001F0B92194.600e-962.792-isopropylmalate synthase n=1 Tax=Paracoccus endo... [more]
A0A7M3T6S5_9RHOB1.010e-662.502-isopropylmalate synthase n=2 Tax=Pikeienuella pi... [more]
UPI001E358AF42.530e-651.112-isopropylmalate synthase n=1 Tax=Oceanicella sp.... [more]
A0A356V5N1_9RHOB1.150e-546.672-isopropylmalate synthase (Fragment) n=1 Tax=Rhod... [more]
A0A344PIR7_9RHOB1.610e-560.532-isopropylmalate synthase n=1 Tax=Paracoccus suum... [more]
A0A2G6IY44_9RHOB2.810e-544.682-isopropylmalate synthase n=1 Tax=Rhodobacterales... [more]
A0A4R1YLB6_9RHOB5.090e-546.81Uncharacterized protein n=2 Tax=Rhodovulum steppen... [more]
A0A4R2NYC9_RHOAD6.820e-546.81Uncharacterized protein n=1 Tax=Rhodovulum adriati... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig91561contigEcto-sp8_S_contig91561:4..627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start0
Seed ortholog score62.0
Seed ortholog evalue3.8e-07
Seed eggNOG ortholog1121271.AUCM01000014_gene2763
Model size624
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.protein conserved in bacteria
EggNOG OGs1P07C@1224,2TVGQ@28211,COG4642@1,COG4642@2
Cds size624
COG Functional cat.M
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145265.7810261-CDS-Ecto-sp8_S_contig91561:3..6271681145265.7810261-CDS-Ecto-sp8_S_contig91561:3..627Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig91561 4..627 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig91561.30494.1prot_Ecto-sp8_S_contig91561.30494.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig91561 4..627 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig91561.30494.1

>prot_Ecto-sp8_S_contig91561.30494.1 ID=prot_Ecto-sp8_S_contig91561.30494.1|Name=mRNA_Ecto-sp8_S_contig91561.30494.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=208bp
DVYEGAFRDDRRHGQGNFTGTDGYRYEGEWVAGKISGQGRVTYPDGSVYE
GQFRDDLANGEGRITYPDGSTYEGSWVGGVIEGSGRATYTNGLVYEGEFK
NARNHGQGVMTYPDGYRYEGEWQDGQRHGQGTATYPDGTIYTGAFVDGQR
HGQGKITMPDGFVYEGEWQNGEISGRGVATYTNGDIYEGMFRAGKRQGEG
TMRYASGQ
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mRNA from alignment at Ecto-sp8_S_contig91561:4..627-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig91561.30494.1 ID=mRNA_Ecto-sp8_S_contig91561.30494.1|Name=mRNA_Ecto-sp8_S_contig91561.30494.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=624bp|location=Sequence derived from alignment at Ecto-sp8_S_contig91561:4..627- (Ectocarpus species8 EcLAC_412)
GATGTCTACGAGGGCGCGTTCAGGGACGACCGCCGCCACGGTCAAGGCAA
TTTCACCGGCACCGATGGCTATCGCTATGAGGGCGAATGGGTCGCGGGCA
AGATCTCGGGTCAGGGCCGCGTCACCTATCCCGACGGTTCGGTTTATGAA
GGCCAGTTTCGCGACGACCTCGCCAATGGCGAGGGTCGCATCACCTATCC
CGACGGCTCCACCTATGAGGGATCATGGGTCGGCGGCGTGATCGAGGGAA
GTGGCCGCGCCACCTACACCAACGGCCTCGTCTATGAGGGTGAGTTCAAG
AACGCCCGCAACCATGGTCAAGGCGTGATGACCTACCCCGACGGCTATCG
CTATGAGGGCGAGTGGCAGGACGGTCAACGCCACGGTCAGGGCACTGCCA
CTTACCCCGATGGCACCATCTACACCGGGGCCTTTGTCGATGGCCAGCGC
CATGGGCAGGGTAAGATCACCATGCCTGACGGGTTCGTCTATGAGGGCGA
ATGGCAGAATGGCGAGATCTCAGGCCGGGGTGTCGCCACTTACACCAATG
GCGACATCTATGAGGGCATGTTCCGCGCGGGCAAAAGGCAAGGCGAGGGC
ACCATGCGCTATGCCAGCGGACAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig91561:4..627-

>mRNA_Ecto-sp8_S_contig91561.30494.1 ID=mRNA_Ecto-sp8_S_contig91561.30494.1|Name=mRNA_Ecto-sp8_S_contig91561.30494.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp8_S_contig91561:4..627- (Ectocarpus species8 EcLAC_412)
GATGTCTACGAGGGCGCGTTCAGGGACGACCGCCGCCACGGTCAAGGCAA
TTTCACCGGCACCGATGGCTATCGCTATGAGGGCGAATGGGTCGCGGGCA
AGATCTCGGGTCAGGGCCGCGTCACCTATCCCGACGGTTCGGTTTATGAA
GGCCAGTTTCGCGACGACCTCGCCAATGGCGAGGGTCGCATCACCTATCC
CGACGGCTCCACCTATGAGGGATCATGGGTCGGCGGCGTGATCGAGGGAA
GTGGCCGCGCCACCTACACCAACGGCCTCGTCTATGAGGGTGAGTTCAAG
AACGCCCGCAACCATGGTCAAGGCGTGATGACCTACCCCGACGGCTATCG
CTATGAGGGCGAGTGGCAGGACGGTCAACGCCACGGTCAGGGCACTGCCA
CTTACCCCGATGGCACCATCTACACCGGGGCCTTTGTCGATGGCCAGCGC
CATGGGCAGGGTAAGATCACCATGCCTGACGGGTTCGTCTATGAGGGCGA
ATGGCAGAATGGCGAGATCTCAGGCCGGGGTGTCGCCACTTACACCAATG
GCGACATCTATGAGGGCATGTTCCGCGCGGGCAAAAGGCAAGGCGAGGGC
ACCATGCGCTATGCCAGCGGACAA
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